data_1YGJ # _model_server_result.job_id RIW3lfTqg9VaVwFqfKPRrw _model_server_result.datetime_utc '2024-11-30 00:58:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ygj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1YGJ # _exptl.entry_id 1YGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.476 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-({6-[BENZYL(METHYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)BUTAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YGJ _cell.length_a 100.864 _cell.length_b 100.864 _cell.length_c 55.706 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N6 O' _chem_comp.formula_weight 368.476 _chem_comp.id RMC _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-({6-[BENZYL(METHYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)BUTAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N6-METHYL-(R)-ROSCOVITINE;R-2-[6-(BENZYL-METHYL-AMINO)-9-ISOPROPYL-9H-PURIN-2-YLAMINO]-BUTAN-1-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAP CAQ RMC sing 277 n n OAP HAP RMC sing 278 n n CAQ CAR RMC sing 279 n n CAQ HAQ1 RMC sing 280 n n CAQ HAQ2 RMC sing 281 n n CAR CAK RMC sing 282 n n CAR NAS RMC sing 283 n n CAR HAR RMC sing 284 n n CAK CAI RMC sing 285 n n CAK HAK1 RMC sing 286 n n CAK HAK2 RMC sing 287 n n CAI HAI1 RMC sing 288 n n CAI HAI2 RMC sing 289 n n CAI HAI3 RMC sing 290 n n NAS CAT RMC sing 291 n n NAS HAS RMC sing 292 n n CAT NAU RMC doub 293 n y CAT NAL RMC sing 294 n y NAU CAV RMC sing 295 n y CAV NAW RMC sing 296 n y CAV CAN RMC doub 297 n y NAW CAZ RMC sing 298 n n NAW CAX RMC sing 299 n y CAZ CAY RMC sing 300 n n CAZ CBA RMC sing 301 n n CAZ HAZ RMC sing 302 n n CAY HAY1 RMC sing 303 n n CAY HAY2 RMC sing 304 n n CAY HAY3 RMC sing 305 n n CBA HBA1 RMC sing 306 n n CBA HBA2 RMC sing 307 n n CBA HBA3 RMC sing 308 n n CAX NAO RMC doub 309 n y CAX HAX RMC sing 310 n n CAN NAO RMC sing 311 n y CAN CAM RMC sing 312 n y NAL CAM RMC doub 313 n y CAM NAJ RMC sing 314 n n NAJ CAD RMC sing 315 n n NAJ CBB RMC sing 316 n n CAD CAB RMC sing 317 n n CAD HAD1 RMC sing 318 n n CAD HAD2 RMC sing 319 n n CAE CAG RMC doub 320 n y CAE CAB RMC sing 321 n y CAE HAE RMC sing 322 n n CAG CAH RMC sing 323 n y CAG HAG RMC sing 324 n n CAH CAF RMC doub 325 n y CAH HAH RMC sing 326 n n CAF CAC RMC sing 327 n y CAF HAF RMC sing 328 n n CAC CAB RMC doub 329 n y CAC HAC RMC sing 330 n n CBB HBB1 RMC sing 331 n n CBB HBB2 RMC sing 332 n n CBB HBB3 RMC sing 333 n n # _atom_sites.entry_id 1YGJ _atom_sites.fract_transf_matrix[1][1] 0.009914 _atom_sites.fract_transf_matrix[1][2] 0.005724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RMC A 1 1001 1 RMC RRC . C 3 HOH A 1 1002 1 HOH TIP . C 3 HOH A 2 1003 2 HOH TIP . C 3 HOH A 3 1004 3 HOH TIP . C 3 HOH A 4 1005 4 HOH TIP . C 3 HOH A 5 1006 5 HOH TIP . C 3 HOH A 6 1007 6 HOH TIP . C 3 HOH A 7 1008 7 HOH TIP . C 3 HOH A 8 1009 8 HOH TIP . C 3 HOH A 9 1010 9 HOH TIP . C 3 HOH A 10 1011 10 HOH TIP . C 3 HOH A 11 1012 11 HOH TIP . C 3 HOH A 12 1013 12 HOH TIP . C 3 HOH A 13 1014 13 HOH TIP . C 3 HOH A 14 1015 14 HOH TIP . C 3 HOH A 15 1016 15 HOH TIP . C 3 HOH A 16 1017 16 HOH TIP . C 3 HOH A 17 1018 17 HOH TIP . C 3 HOH A 18 1019 18 HOH TIP . C 3 HOH A 19 1020 19 HOH TIP . C 3 HOH A 20 1021 20 HOH TIP . C 3 HOH A 21 1022 21 HOH TIP . C 3 HOH A 22 1023 22 HOH TIP . C 3 HOH A 23 1024 23 HOH TIP . C 3 HOH A 24 1025 24 HOH TIP . C 3 HOH A 25 1026 25 HOH TIP . C 3 HOH A 26 1027 26 HOH TIP . C 3 HOH A 27 1028 27 HOH TIP . C 3 HOH A 28 1029 28 HOH TIP . C 3 HOH A 29 1030 29 HOH TIP . C 3 HOH A 30 1031 30 HOH TIP . C 3 HOH A 31 1032 31 HOH TIP . C 3 HOH A 32 1033 32 HOH TIP . C 3 HOH A 33 1034 33 HOH TIP . C 3 HOH A 34 1035 34 HOH TIP . C 3 HOH A 35 1036 35 HOH TIP . C 3 HOH A 36 1037 36 HOH TIP . C 3 HOH A 37 1038 37 HOH TIP . C 3 HOH A 38 1039 38 HOH TIP . C 3 HOH A 39 1040 40 HOH TIP . C 3 HOH A 40 1041 41 HOH TIP . C 3 HOH A 41 1042 42 HOH TIP . C 3 HOH A 42 1043 43 HOH TIP . C 3 HOH A 43 1044 44 HOH TIP . C 3 HOH A 44 1045 45 HOH TIP . C 3 HOH A 45 1046 46 HOH TIP . C 3 HOH A 46 1047 47 HOH TIP . C 3 HOH A 47 1048 48 HOH TIP . C 3 HOH A 48 1049 49 HOH TIP . C 3 HOH A 49 1050 50 HOH TIP . C 3 HOH A 50 1051 51 HOH TIP . C 3 HOH A 51 1052 52 HOH TIP . C 3 HOH A 52 1053 53 HOH TIP . C 3 HOH A 53 1054 54 HOH TIP . C 3 HOH A 54 1055 55 HOH TIP . C 3 HOH A 55 1056 56 HOH TIP . C 3 HOH A 56 1057 57 HOH TIP . C 3 HOH A 57 1058 58 HOH TIP . C 3 HOH A 58 1059 59 HOH TIP . C 3 HOH A 59 1060 60 HOH TIP . C 3 HOH A 60 1061 61 HOH TIP . C 3 HOH A 61 1062 62 HOH TIP . C 3 HOH A 62 1063 63 HOH TIP . C 3 HOH A 63 1064 64 HOH TIP . C 3 HOH A 64 1065 65 HOH TIP . C 3 HOH A 65 1066 66 HOH TIP . C 3 HOH A 66 1067 67 HOH TIP . C 3 HOH A 67 1068 68 HOH TIP . C 3 HOH A 68 1069 69 HOH TIP . C 3 HOH A 69 1070 70 HOH TIP . C 3 HOH A 70 1071 71 HOH TIP . C 3 HOH A 71 1072 72 HOH TIP . C 3 HOH A 72 1073 73 HOH TIP . C 3 HOH A 73 1074 74 HOH TIP . C 3 HOH A 74 1075 75 HOH TIP . C 3 HOH A 75 1076 76 HOH TIP . C 3 HOH A 76 1077 77 HOH TIP . C 3 HOH A 77 1078 78 HOH TIP . C 3 HOH A 78 1079 79 HOH TIP . C 3 HOH A 79 1080 80 HOH TIP . C 3 HOH A 80 1081 81 HOH TIP . C 3 HOH A 81 1082 82 HOH TIP . C 3 HOH A 82 1083 83 HOH TIP . C 3 HOH A 83 1084 84 HOH TIP . C 3 HOH A 84 1085 85 HOH TIP . C 3 HOH A 85 1086 86 HOH TIP . C 3 HOH A 86 1087 87 HOH TIP . C 3 HOH A 87 1088 88 HOH TIP . C 3 HOH A 88 1089 89 HOH TIP . C 3 HOH A 89 1090 90 HOH TIP . C 3 HOH A 90 1091 91 HOH TIP . C 3 HOH A 91 1092 92 HOH TIP . C 3 HOH A 92 1093 93 HOH TIP . C 3 HOH A 93 1094 94 HOH TIP . C 3 HOH A 94 1095 95 HOH TIP . C 3 HOH A 95 1096 96 HOH TIP . C 3 HOH A 96 1097 97 HOH TIP . C 3 HOH A 97 1098 98 HOH TIP . C 3 HOH A 98 1099 99 HOH TIP . C 3 HOH A 99 1100 100 HOH TIP . C 3 HOH A 100 1101 101 HOH TIP . C 3 HOH A 101 1102 102 HOH TIP . C 3 HOH A 102 1103 103 HOH TIP . C 3 HOH A 103 1104 104 HOH TIP . C 3 HOH A 104 1105 105 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAP RMC . . . B 2 -13.192 62.137 38.319 1 40.35 ? OAP RMC 1001 A 1 HETATM 2 C CAQ RMC . . . B 2 -13.357 60.915 38.022 1 39.03 ? CAQ RMC 1001 A 1 HETATM 3 C CAR RMC . . . B 2 -13.737 60.382 36.982 1 38.53 ? CAR RMC 1001 A 1 HETATM 4 C CAK RMC . . . B 2 -12.703 60.233 35.929 1 37.31 ? CAK RMC 1001 A 1 HETATM 5 C CAI RMC . . . B 2 -12.668 59.71 34.94 1 37.97 ? CAI RMC 1001 A 1 HETATM 6 N NAS RMC . . . B 2 -14.545 59.189 37.379 1 39.29 ? NAS RMC 1001 A 1 HETATM 7 C CAT RMC . . . B 2 -15.749 58.812 36.845 1 37.01 ? CAT RMC 1001 A 1 HETATM 8 N NAU RMC . . . B 2 -16.324 59.562 35.854 1 35.88 ? NAU RMC 1001 A 1 HETATM 9 C CAV RMC . . . B 2 -17.515 59.18 35.303 1 36.34 ? CAV RMC 1001 A 1 HETATM 10 N NAW RMC . . . B 2 -18.17 59.794 34.334 1 36.34 ? NAW RMC 1001 A 1 HETATM 11 C CAZ RMC . . . B 2 -17.544 61.058 33.848 1 37.57 ? CAZ RMC 1001 A 1 HETATM 12 C CAY RMC . . . B 2 -17.082 60.843 32.411 1 36.59 ? CAY RMC 1001 A 1 HETATM 13 C CBA RMC . . . B 2 -18.509 62.189 34.081 1 37.99 ? CBA RMC 1001 A 1 HETATM 14 C CAX RMC . . . B 2 -19.293 59.044 34.075 1 34.49 ? CAX RMC 1001 A 1 HETATM 15 C CAN RMC . . . B 2 -18.17 58.025 35.654 1 35.26 ? CAN RMC 1001 A 1 HETATM 16 N NAO RMC . . . B 2 -19.342 57.914 34.895 1 35.87 ? NAO RMC 1001 A 1 HETATM 17 N NAL RMC . . . B 2 -16.383 57.678 37.239 1 36.32 ? NAL RMC 1001 A 1 HETATM 18 C CAM RMC . . . B 2 -17.575 57.245 36.712 1 35.63 ? CAM RMC 1001 A 1 HETATM 19 N NAJ RMC . . . B 2 -18.104 56.064 37.238 1 34.92 ? NAJ RMC 1001 A 1 HETATM 20 C CAD RMC . . . B 2 -18.495 55.087 36.588 1 34.49 ? CAD RMC 1001 A 1 HETATM 21 C CAE RMC . . . B 2 -17.123 53.633 35.605 1 34.94 ? CAE RMC 1001 A 1 HETATM 22 C CAG RMC . . . B 2 -16.111 52.638 35.75 1 33.87 ? CAG RMC 1001 A 1 HETATM 23 C CAH RMC . . . B 2 -15.832 52.097 37.036 1 34.12 ? CAH RMC 1001 A 1 HETATM 24 C CAF RMC . . . B 2 -16.551 52.551 38.177 1 34.36 ? CAF RMC 1001 A 1 HETATM 25 C CAC RMC . . . B 2 -17.558 53.537 38.045 1 34.57 ? CAC RMC 1001 A 1 HETATM 26 C CAB RMC . . . B 2 -17.815 54.054 36.765 1 35.38 ? CAB RMC 1001 A 1 HETATM 27 C CBB RMC . . . B 2 -19.113 56.403 38.201 1 45.76 ? CBB RMC 1001 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #