data_1YH8
#
_model_server_result.job_id            rMzZ6YfzU7YkPaCIOB-LTQ 
_model_server_result.datetime_utc      '2024-11-10 01:22:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yh8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    1YH8 
#
_exptl.entry_id    1YH8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YH8 
_cell.length_a            101.61 
_cell.length_b            101.61 
_cell.length_c            124.18 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YH8 
_symmetry.cell_setting             hexagonal 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 28 A HIS 29 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 A NE2 HIS 57 A HIS 58 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A NE2 HIS 73 A HIS 79 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 A OE1 GLU 89 A GLU 95 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc5 A OE2 GLU 89 A GLU 95 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc6 A NE2 HIS 187 A HIS 200 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc7 A NE2 HIS 225 A HIS 238 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc8 A OD1 ASP 229 A ASP 242 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc9 A OD2 ASP 229 A ASP 242 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc10 C ZN ZN . A ZN 501 1_555 G O1 PAM . A PAM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc11 C ZN ZN . A ZN 501 1_555 G O2 PAM . A PAM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc12 E ZN ZN . A ZN 504 1_555 B N GLY 1 B GLY 2 3_574 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc13 E ZN ZN . A ZN 504 1_555 B OE2 GLU 119 B GLU 126 3_574 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc14 E ZN ZN . A ZN 504 1_555 B OE1 GLU 119 B GLU 126 3_574 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc15 B NE2 HIS 57 B HIS 58 1_555 I ZN ZN . B ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc16 B NE2 HIS 73 B HIS 79 1_555 H ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc17 B NE2 HIS 187 B HIS 200 1_555 I ZN ZN . B ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc18 B NE2 HIS 225 B HIS 238 1_555 H ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc19 B OD1 ASP 229 B ASP 242 1_555 H ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc20 B OD2 ASP 229 B ASP 242 1_555 H ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc21 H ZN ZN . B ZN 505 1_555 L O2 PAM . B PAM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc22 H ZN ZN . B ZN 505 1_555 L O1 PAM . B PAM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc23 I ZN ZN . B ZN 507 1_555 K CL CL . B CL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc24 I ZN ZN . B ZN 507 1_555 N O HOH . B HOH 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YH8 
_atom_sites.fract_transf_matrix[1][1]    0.009842 
_atom_sites.fract_transf_matrix[1][2]    0.005682 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008053 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 501 501 ZN ZN . 
D 2 ZN A 1 503 503 ZN ZN . 
E 2 ZN A 1 504 504 ZN ZN . 
F 3 CL A 1 601 601 CL CL . 
G 4 PAM A 1 801 801 PAM PAM . 
H 2 ZN B 1 505 505 ZN ZN . 
I 2 ZN B 1 507 507 ZN ZN . 
J 3 CL B 1 602 602 CL CL . 
K 3 CL B 1 603 603 CL CL . 
L 4 PAM B 1 802 802 PAM PAM . 
M 5 HOH A 1 802 3 HOH HOH . 
M 5 HOH A 2 803 4 HOH HOH . 
M 5 HOH A 3 804 5 HOH HOH . 
M 5 HOH A 4 805 9 HOH HOH . 
M 5 HOH A 5 806 10 HOH HOH . 
M 5 HOH A 6 807 14 HOH HOH . 
M 5 HOH A 7 808 15 HOH HOH . 
M 5 HOH A 8 809 16 HOH HOH . 
M 5 HOH A 9 810 30 HOH HOH . 
M 5 HOH A 10 811 33 HOH HOH . 
M 5 HOH A 11 812 36 HOH HOH . 
M 5 HOH A 12 813 37 HOH HOH . 
M 5 HOH A 13 814 38 HOH HOH . 
M 5 HOH A 14 815 40 HOH HOH . 
M 5 HOH A 15 816 43 HOH HOH . 
M 5 HOH A 16 817 47 HOH HOH . 
M 5 HOH A 17 818 49 HOH HOH . 
M 5 HOH A 18 819 50 HOH HOH . 
M 5 HOH A 19 820 51 HOH HOH . 
M 5 HOH A 20 821 53 HOH HOH . 
M 5 HOH A 21 822 55 HOH HOH . 
M 5 HOH A 22 823 61 HOH HOH . 
M 5 HOH A 23 824 67 HOH HOH . 
M 5 HOH A 24 825 69 HOH HOH . 
M 5 HOH A 25 826 71 HOH HOH . 
M 5 HOH A 26 827 72 HOH HOH . 
M 5 HOH A 27 828 77 HOH HOH . 
M 5 HOH A 28 829 78 HOH HOH . 
M 5 HOH A 29 830 79 HOH HOH . 
M 5 HOH A 30 831 82 HOH HOH . 
M 5 HOH A 31 832 83 HOH HOH . 
M 5 HOH A 32 833 85 HOH HOH . 
M 5 HOH A 33 834 89 HOH HOH . 
M 5 HOH A 34 835 95 HOH HOH . 
M 5 HOH A 35 836 96 HOH HOH . 
M 5 HOH A 36 837 101 HOH HOH . 
M 5 HOH A 37 838 102 HOH HOH . 
M 5 HOH A 38 839 103 HOH HOH . 
M 5 HOH A 39 840 105 HOH HOH . 
M 5 HOH A 40 841 106 HOH HOH . 
M 5 HOH A 41 842 107 HOH HOH . 
M 5 HOH A 42 843 110 HOH HOH . 
M 5 HOH A 43 844 111 HOH HOH . 
M 5 HOH A 44 845 114 HOH HOH . 
M 5 HOH A 45 846 115 HOH HOH . 
M 5 HOH A 46 847 121 HOH HOH . 
M 5 HOH A 47 848 125 HOH HOH . 
M 5 HOH A 48 849 127 HOH HOH . 
M 5 HOH A 49 850 128 HOH HOH . 
M 5 HOH A 50 851 131 HOH HOH . 
M 5 HOH A 51 852 133 HOH HOH . 
M 5 HOH A 52 853 136 HOH HOH . 
M 5 HOH A 53 854 140 HOH HOH . 
M 5 HOH A 54 855 142 HOH HOH . 
M 5 HOH A 55 856 42 HOH HOH . 
M 5 HOH A 56 857 54 HOH HOH . 
M 5 HOH A 57 858 73 HOH HOH . 
N 5 HOH B 1 803 2 HOH HOH . 
N 5 HOH B 2 804 6 HOH HOH . 
N 5 HOH B 3 805 8 HOH HOH . 
N 5 HOH B 4 806 12 HOH HOH . 
N 5 HOH B 5 807 13 HOH HOH . 
N 5 HOH B 6 808 17 HOH HOH . 
N 5 HOH B 7 809 18 HOH HOH . 
N 5 HOH B 8 810 19 HOH HOH . 
N 5 HOH B 9 811 20 HOH HOH . 
N 5 HOH B 10 812 21 HOH HOH . 
N 5 HOH B 11 813 22 HOH HOH . 
N 5 HOH B 12 814 23 HOH HOH . 
N 5 HOH B 13 815 26 HOH HOH . 
N 5 HOH B 14 816 27 HOH HOH . 
N 5 HOH B 15 817 28 HOH HOH . 
N 5 HOH B 16 818 29 HOH HOH . 
N 5 HOH B 17 819 31 HOH HOH . 
N 5 HOH B 18 820 32 HOH HOH . 
N 5 HOH B 19 821 34 HOH HOH . 
N 5 HOH B 20 822 35 HOH HOH . 
N 5 HOH B 21 823 41 HOH HOH . 
N 5 HOH B 22 824 44 HOH HOH . 
N 5 HOH B 23 825 45 HOH HOH . 
N 5 HOH B 24 826 46 HOH HOH . 
N 5 HOH B 25 827 48 HOH HOH . 
N 5 HOH B 26 828 52 HOH HOH . 
N 5 HOH B 27 829 60 HOH HOH . 
N 5 HOH B 28 830 65 HOH HOH . 
N 5 HOH B 29 831 66 HOH HOH . 
N 5 HOH B 30 832 68 HOH HOH . 
N 5 HOH B 31 833 76 HOH HOH . 
N 5 HOH B 32 834 84 HOH HOH . 
N 5 HOH B 33 835 86 HOH HOH . 
N 5 HOH B 34 836 87 HOH HOH . 
N 5 HOH B 35 837 90 HOH HOH . 
N 5 HOH B 36 838 91 HOH HOH . 
N 5 HOH B 37 839 92 HOH HOH . 
N 5 HOH B 38 840 98 HOH HOH . 
N 5 HOH B 39 841 99 HOH HOH . 
N 5 HOH B 40 842 100 HOH HOH . 
N 5 HOH B 41 843 104 HOH HOH . 
N 5 HOH B 42 844 108 HOH HOH . 
N 5 HOH B 43 845 112 HOH HOH . 
N 5 HOH B 44 846 113 HOH HOH . 
N 5 HOH B 45 847 117 HOH HOH . 
N 5 HOH B 46 848 118 HOH HOH . 
N 5 HOH B 47 849 120 HOH HOH . 
N 5 HOH B 48 850 122 HOH HOH . 
N 5 HOH B 49 851 124 HOH HOH . 
N 5 HOH B 50 852 126 HOH HOH . 
N 5 HOH B 51 853 130 HOH HOH . 
N 5 HOH B 52 854 135 HOH HOH . 
N 5 HOH B 53 855 138 HOH HOH . 
N 5 HOH B 54 856 139 HOH HOH . 
N 5 HOH B 55 857 141 HOH HOH . 
N 5 HOH B 56 858 7 HOH HOH . 
N 5 HOH B 57 859 24 HOH HOH . 
N 5 HOH B 58 860 58 HOH HOH . 
N 5 HOH B 59 861 62 HOH HOH . 
N 5 HOH B 60 862 64 HOH HOH . 
N 5 HOH B 61 863 75 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               33.252 
_atom_site.Cartn_y               91.035 
_atom_site.Cartn_z               -0.864 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        43.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#