data_1YHJ # _model_server_result.job_id qBH7pPfs4gry6JvsgJ_AbQ _model_server_result.datetime_utc '2024-11-08 17:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yhj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":313}' # _entry.id 1YHJ # _exptl.entry_id 1YHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-{[6-(BENZYLOXY)-9-ISOPROPYL-9H-PURIN-2-YL]AMINO}BUTAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YHJ _cell.length_a 103.173 _cell.length_b 103.173 _cell.length_c 58.538 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H25 N5 O2' _chem_comp.formula_weight 355.434 _chem_comp.id R6C _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-{[6-(BENZYLOXY)-9-ISOPROPYL-9H-PURIN-2-YL]AMINO}BUTAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms O6-(R)-ROSCOVITINE;R-2-(6-BENZYLOXY-9-ISOPROPYL-9H-PURIN-2-YLAMINO)-BUTAN-1-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAP CAQ R6C sing 277 n n OAP HAP R6C sing 278 n n CAQ CAR R6C sing 279 n n CAQ HAQ1 R6C sing 280 n n CAQ HAQ2 R6C sing 281 n n CAR CAK R6C sing 282 n n CAR NAS R6C sing 283 n n CAR HAR R6C sing 284 n n CAK CAI R6C sing 285 n n CAK HAK1 R6C sing 286 n n CAK HAK2 R6C sing 287 n n CAI HAI1 R6C sing 288 n n CAI HAI2 R6C sing 289 n n CAI HAI3 R6C sing 290 n n NAS CAT R6C sing 291 n n NAS HAS R6C sing 292 n n CAT NAU R6C doub 293 n y CAT NAL R6C sing 294 n y NAU CAV R6C sing 295 n y CAV NAW R6C sing 296 n y CAV CAN R6C doub 297 n y NAW CAZ R6C sing 298 n n NAW CAX R6C sing 299 n y CAZ CAY R6C sing 300 n n CAZ CBA R6C sing 301 n n CAZ HAZ R6C sing 302 n n CAY HAY1 R6C sing 303 n n CAY HAY2 R6C sing 304 n n CAY HAY3 R6C sing 305 n n CBA HBA1 R6C sing 306 n n CBA HBA2 R6C sing 307 n n CBA HBA3 R6C sing 308 n n CAX NAO R6C doub 309 n y CAX HAX R6C sing 310 n n CAN NAO R6C sing 311 n y CAN CAM R6C sing 312 n y NAL CAM R6C doub 313 n y CAM OAJ R6C sing 314 n n OAJ CAD R6C sing 315 n n CAD CAE R6C sing 316 n n CAD HAD1 R6C sing 317 n n CAD HAD2 R6C sing 318 n n CAE CAG R6C sing 319 n y CAE CAB R6C doub 320 n y CAG CAH R6C doub 321 n y CAG HAG R6C sing 322 n n CAH CAF R6C sing 323 n y CAH HAH R6C sing 324 n n CAF CAC R6C doub 325 n y CAF HAF R6C sing 326 n n CAC CAB R6C sing 327 n y CAC HAC R6C sing 328 n n CAB HAB R6C sing 329 n n # _atom_sites.entry_id 1YHJ _atom_sites.fract_transf_matrix[1][1] 0.009692 _atom_sites.fract_transf_matrix[1][2] 0.005596 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R6C A 1 313 1 R6C DRC . C 3 HOH A 1 314 2 HOH TIP . C 3 HOH A 2 315 3 HOH TIP . C 3 HOH A 3 316 4 HOH TIP . C 3 HOH A 4 317 5 HOH TIP . C 3 HOH A 5 318 6 HOH TIP . C 3 HOH A 6 319 7 HOH TIP . C 3 HOH A 7 320 8 HOH TIP . C 3 HOH A 8 321 9 HOH TIP . C 3 HOH A 9 322 10 HOH TIP . C 3 HOH A 10 323 11 HOH TIP . C 3 HOH A 11 324 12 HOH TIP . C 3 HOH A 12 325 13 HOH TIP . C 3 HOH A 13 326 14 HOH TIP . C 3 HOH A 14 327 15 HOH TIP . C 3 HOH A 15 328 16 HOH TIP . C 3 HOH A 16 329 17 HOH TIP . C 3 HOH A 17 330 18 HOH TIP . C 3 HOH A 18 331 19 HOH TIP . C 3 HOH A 19 332 20 HOH TIP . C 3 HOH A 20 333 21 HOH TIP . C 3 HOH A 21 334 22 HOH TIP . C 3 HOH A 22 335 23 HOH TIP . C 3 HOH A 23 336 24 HOH TIP . C 3 HOH A 24 337 25 HOH TIP . C 3 HOH A 25 338 26 HOH TIP . C 3 HOH A 26 339 27 HOH TIP . C 3 HOH A 27 340 28 HOH TIP . C 3 HOH A 28 341 29 HOH TIP . C 3 HOH A 29 342 30 HOH TIP . C 3 HOH A 30 343 31 HOH TIP . C 3 HOH A 31 344 32 HOH TIP . C 3 HOH A 32 345 33 HOH TIP . C 3 HOH A 33 346 34 HOH TIP . C 3 HOH A 34 347 35 HOH TIP . C 3 HOH A 35 348 36 HOH TIP . C 3 HOH A 36 349 37 HOH TIP . C 3 HOH A 37 350 38 HOH TIP . C 3 HOH A 38 351 39 HOH TIP . C 3 HOH A 39 352 40 HOH TIP . C 3 HOH A 40 353 41 HOH TIP . C 3 HOH A 41 354 42 HOH TIP . C 3 HOH A 42 355 43 HOH TIP . C 3 HOH A 43 356 44 HOH TIP . C 3 HOH A 44 357 45 HOH TIP . C 3 HOH A 45 358 46 HOH TIP . C 3 HOH A 46 359 47 HOH TIP . C 3 HOH A 47 360 48 HOH TIP . C 3 HOH A 48 361 49 HOH TIP . C 3 HOH A 49 362 50 HOH TIP . C 3 HOH A 50 363 51 HOH TIP . C 3 HOH A 51 364 52 HOH TIP . C 3 HOH A 52 365 53 HOH TIP . C 3 HOH A 53 366 54 HOH TIP . C 3 HOH A 54 367 55 HOH TIP . C 3 HOH A 55 368 56 HOH TIP . C 3 HOH A 56 369 57 HOH TIP . C 3 HOH A 57 370 58 HOH TIP . C 3 HOH A 58 371 59 HOH TIP . C 3 HOH A 59 372 60 HOH TIP . C 3 HOH A 60 373 61 HOH TIP . C 3 HOH A 61 374 62 HOH TIP . C 3 HOH A 62 375 63 HOH TIP . C 3 HOH A 63 376 64 HOH TIP . C 3 HOH A 64 377 65 HOH TIP . C 3 HOH A 65 378 66 HOH TIP . C 3 HOH A 66 379 67 HOH TIP . C 3 HOH A 67 380 68 HOH TIP . C 3 HOH A 68 381 69 HOH TIP . C 3 HOH A 69 382 70 HOH TIP . C 3 HOH A 70 383 71 HOH TIP . C 3 HOH A 71 384 72 HOH TIP . C 3 HOH A 72 385 73 HOH TIP . C 3 HOH A 73 386 74 HOH TIP . C 3 HOH A 74 387 75 HOH TIP . C 3 HOH A 75 388 76 HOH TIP . C 3 HOH A 76 389 78 HOH TIP . C 3 HOH A 77 390 79 HOH TIP . C 3 HOH A 78 391 80 HOH TIP . C 3 HOH A 79 392 81 HOH TIP . C 3 HOH A 80 393 82 HOH TIP . C 3 HOH A 81 394 83 HOH TIP . C 3 HOH A 82 395 84 HOH TIP . C 3 HOH A 83 396 85 HOH TIP . C 3 HOH A 84 397 86 HOH TIP . C 3 HOH A 85 398 87 HOH TIP . C 3 HOH A 86 399 88 HOH TIP . C 3 HOH A 87 400 89 HOH TIP . C 3 HOH A 88 401 90 HOH TIP . C 3 HOH A 89 402 91 HOH TIP . C 3 HOH A 90 403 92 HOH TIP . C 3 HOH A 91 404 93 HOH TIP . C 3 HOH A 92 405 94 HOH TIP . C 3 HOH A 93 406 95 HOH TIP . C 3 HOH A 94 407 96 HOH TIP . C 3 HOH A 95 408 97 HOH TIP . C 3 HOH A 96 409 98 HOH TIP . C 3 HOH A 97 410 99 HOH TIP . C 3 HOH A 98 411 100 HOH TIP . C 3 HOH A 99 412 101 HOH TIP . C 3 HOH A 100 413 102 HOH TIP . C 3 HOH A 101 414 103 HOH TIP . C 3 HOH A 102 415 104 HOH TIP . C 3 HOH A 103 416 105 HOH TIP . C 3 HOH A 104 417 106 HOH TIP . C 3 HOH A 105 418 107 HOH TIP . C 3 HOH A 106 419 108 HOH TIP . C 3 HOH A 107 420 109 HOH TIP . C 3 HOH A 108 421 110 HOH TIP . C 3 HOH A 109 422 111 HOH TIP . C 3 HOH A 110 423 112 HOH TIP . C 3 HOH A 111 424 113 HOH TIP . C 3 HOH A 112 425 114 HOH TIP . C 3 HOH A 113 426 115 HOH TIP . C 3 HOH A 114 427 116 HOH TIP . C 3 HOH A 115 428 117 HOH TIP . C 3 HOH A 116 429 118 HOH TIP . C 3 HOH A 117 430 119 HOH TIP . C 3 HOH A 118 431 120 HOH TIP . C 3 HOH A 119 432 121 HOH TIP . C 3 HOH A 120 433 122 HOH TIP . C 3 HOH A 121 434 123 HOH TIP . C 3 HOH A 122 435 124 HOH TIP . C 3 HOH A 123 436 125 HOH TIP . C 3 HOH A 124 437 126 HOH TIP . C 3 HOH A 125 438 127 HOH TIP . C 3 HOH A 126 439 128 HOH TIP . C 3 HOH A 127 440 129 HOH TIP . C 3 HOH A 128 441 130 HOH TIP . C 3 HOH A 129 442 131 HOH TIP . C 3 HOH A 130 443 132 HOH TIP . C 3 HOH A 131 444 133 HOH TIP . C 3 HOH A 132 445 134 HOH TIP . C 3 HOH A 133 446 135 HOH TIP . C 3 HOH A 134 447 136 HOH TIP . C 3 HOH A 135 448 137 HOH TIP . C 3 HOH A 136 449 138 HOH TIP . C 3 HOH A 137 450 139 HOH TIP . C 3 HOH A 138 451 140 HOH TIP . C 3 HOH A 139 452 141 HOH TIP . C 3 HOH A 140 453 142 HOH TIP . C 3 HOH A 141 454 143 HOH TIP . C 3 HOH A 142 455 144 HOH TIP . C 3 HOH A 143 456 145 HOH TIP . C 3 HOH A 144 457 146 HOH TIP . C 3 HOH A 145 458 147 HOH TIP . C 3 HOH A 146 459 148 HOH TIP . C 3 HOH A 147 460 149 HOH TIP . C 3 HOH A 148 461 150 HOH TIP . C 3 HOH A 149 462 151 HOH TIP . C 3 HOH A 150 463 152 HOH TIP . C 3 HOH A 151 464 153 HOH TIP . C 3 HOH A 152 465 154 HOH TIP . C 3 HOH A 153 466 155 HOH TIP . C 3 HOH A 154 467 156 HOH TIP . C 3 HOH A 155 468 157 HOH TIP . C 3 HOH A 156 469 158 HOH TIP . C 3 HOH A 157 470 159 HOH TIP . C 3 HOH A 158 471 160 HOH TIP . C 3 HOH A 159 472 161 HOH TIP . C 3 HOH A 160 473 162 HOH TIP . C 3 HOH A 161 474 163 HOH TIP . C 3 HOH A 162 475 164 HOH TIP . C 3 HOH A 163 476 165 HOH TIP . C 3 HOH A 164 477 166 HOH TIP . C 3 HOH A 165 478 167 HOH TIP . C 3 HOH A 166 479 168 HOH TIP . C 3 HOH A 167 480 169 HOH TIP . C 3 HOH A 168 481 170 HOH TIP . C 3 HOH A 169 482 171 HOH TIP . C 3 HOH A 170 483 172 HOH TIP . C 3 HOH A 171 484 173 HOH TIP . C 3 HOH A 172 485 174 HOH TIP . C 3 HOH A 173 486 175 HOH TIP . C 3 HOH A 174 487 176 HOH TIP . C 3 HOH A 175 488 177 HOH TIP . C 3 HOH A 176 489 178 HOH TIP . C 3 HOH A 177 490 179 HOH TIP . C 3 HOH A 178 491 180 HOH TIP . C 3 HOH A 179 492 181 HOH TIP . C 3 HOH A 180 493 182 HOH TIP . C 3 HOH A 181 494 183 HOH TIP . C 3 HOH A 182 495 184 HOH TIP . C 3 HOH A 183 496 185 HOH TIP . C 3 HOH A 184 497 186 HOH TIP . C 3 HOH A 185 498 187 HOH TIP . C 3 HOH A 186 499 188 HOH TIP . C 3 HOH A 187 500 189 HOH TIP . C 3 HOH A 188 501 190 HOH TIP . C 3 HOH A 189 502 191 HOH TIP . C 3 HOH A 190 503 192 HOH TIP . C 3 HOH A 191 504 193 HOH TIP . C 3 HOH A 192 505 194 HOH TIP . C 3 HOH A 193 506 195 HOH TIP . C 3 HOH A 194 507 196 HOH TIP . C 3 HOH A 195 508 197 HOH TIP . C 3 HOH A 196 509 198 HOH TIP . C 3 HOH A 197 510 199 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAP R6C . . . B 2 12.936 62.452 -0.82 1 45.21 ? OAP R6C 313 A 1 HETATM 2 C CAQ R6C . . . B 2 12.977 61.1 -0.464 1 43.21 ? CAQ R6C 313 A 1 HETATM 3 C CAR R6C . . . B 2 13.936 60.972 0.716 1 42.18 ? CAR R6C 313 A 1 HETATM 4 C CAK R6C . . . B 2 13.047 60.777 1.968 1 41.52 ? CAK R6C 313 A 1 HETATM 5 C CAI R6C . . . B 2 13.092 59.431 2.666 1 42.05 ? CAI R6C 313 A 1 HETATM 6 N NAS R6C . . . B 2 14.77 59.832 0.297 1 41.91 ? NAS R6C 313 A 1 HETATM 7 C CAT R6C . . . B 2 15.987 59.41 0.78 1 39.34 ? CAT R6C 313 A 1 HETATM 8 N NAU R6C . . . B 2 16.562 60.086 1.831 1 38.22 ? NAU R6C 313 A 1 HETATM 9 C CAV R6C . . . B 2 17.737 59.63 2.382 1 38.46 ? CAV R6C 313 A 1 HETATM 10 N NAW R6C . . . B 2 18.425 60.175 3.385 1 39.51 ? NAW R6C 313 A 1 HETATM 11 C CAZ R6C . . . B 2 17.805 61.367 4.02 1 40.67 ? CAZ R6C 313 A 1 HETATM 12 C CAY R6C . . . B 2 17.386 60.998 5.435 1 40.99 ? CAY R6C 313 A 1 HETATM 13 C CBA R6C . . . B 2 18.767 62.526 3.889 1 41.59 ? CBA R6C 313 A 1 HETATM 14 C CAX R6C . . . B 2 19.55 59.399 3.559 1 37.65 ? CAX R6C 313 A 1 HETATM 15 C CAN R6C . . . B 2 18.434 58.555 1.881 1 36.96 ? CAN R6C 313 A 1 HETATM 16 N NAO R6C . . . B 2 19.594 58.362 2.635 1 36.86 ? NAO R6C 313 A 1 HETATM 17 N NAL R6C . . . B 2 16.651 58.329 0.281 1 37.95 ? NAL R6C 313 A 1 HETATM 18 C CAM R6C . . . B 2 17.828 57.861 0.797 1 37.31 ? CAM R6C 313 A 1 HETATM 19 O OAJ R6C . . . B 2 18.45 56.775 0.248 1 36.91 ? OAJ R6C 313 A 1 HETATM 20 C CAD R6C . . . B 2 18.944 55.673 1.063 1 38.37 ? CAD R6C 313 A 1 HETATM 21 C CAE R6C . . . B 2 17.918 54.652 1.529 1 39.28 ? CAE R6C 313 A 1 HETATM 22 C CAG R6C . . . B 2 17.843 54.324 2.915 1 38.06 ? CAG R6C 313 A 1 HETATM 23 C CAH R6C . . . B 2 16.895 53.372 3.364 1 37.84 ? CAH R6C 313 A 1 HETATM 24 C CAF R6C . . . B 2 16.014 52.741 2.439 1 38.36 ? CAF R6C 313 A 1 HETATM 25 C CAC R6C . . . B 2 16.082 53.064 1.058 1 39.86 ? CAC R6C 313 A 1 HETATM 26 C CAB R6C . . . B 2 17.034 54.016 0.6 1 39.46 ? CAB R6C 313 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #