data_1YHO # _model_server_result.job_id op-Y9xKmVGd0Rflx5ky_bA _model_server_result.datetime_utc '2024-10-18 09:20:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 1YHO # _exptl.entry_id 1YHO _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 291.326 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-DIAMINO-5-(3,4,5-TRIMETHOXY-BENZYL)-PYRIMIDIN-1-IUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YHO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H19 N4 O3 1' _chem_comp.formula_weight 291.326 _chem_comp.id TRR _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-DIAMINO-5-(3,4,5-TRIMETHOXY-BENZYL)-PYRIMIDIN-1-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 TRR doub 414 n y N1 C6 TRR sing 415 n y N1 H1 TRR sing 416 n n C2 N2 TRR sing 417 n n C2 N3 TRR sing 418 n y N2 H21 TRR sing 419 n n N2 H22 TRR sing 420 n n N3 C4 TRR doub 421 n y C4 N4 TRR sing 422 n n C4 C5 TRR sing 423 n y N4 H41 TRR sing 424 n n N4 H42 TRR sing 425 n n C5 C6 TRR doub 426 n y C5 C7 TRR sing 427 n n C6 H6 TRR sing 428 n n C7 C11 TRR sing 429 n n C7 H71 TRR sing 430 n n C7 H72 TRR sing 431 n n C11 C12 TRR doub 432 n y C11 C16 TRR sing 433 n y C12 C13 TRR sing 434 n y C12 H12 TRR sing 435 n n C13 C14 TRR doub 436 n y C13 O13 TRR sing 437 n n C14 C15 TRR sing 438 n y C14 O14 TRR sing 439 n n C15 C16 TRR doub 440 n y C15 O15 TRR sing 441 n n C16 H16 TRR sing 442 n n O13 C17 TRR sing 443 n n O14 C18 TRR sing 444 n n O15 C19 TRR sing 445 n n C17 H171 TRR sing 446 n n C17 H172 TRR sing 447 n n C17 H173 TRR sing 448 n n C18 H181 TRR sing 449 n n C18 H182 TRR sing 450 n n C18 H183 TRR sing 451 n n C19 H191 TRR sing 452 n n C19 H192 TRR sing 453 n n C19 H193 TRR sing 454 n n # _atom_sites.entry_id 1YHO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 190 190 NDP NDP . C 3 TRR A 1 200 200 TRR TRR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TRR . . . C 3 -2.352 -4.227 5.264 1 0 ? N1 TRR 200 A 1 HETATM 2 C C2 TRR . . . C 3 -2.949 -3.32 4.416 1 0 ? C2 TRR 200 A 1 HETATM 3 N N2 TRR . . . C 3 -4.318 -3.299 4.287 1 0 ? N2 TRR 200 A 1 HETATM 4 N N3 TRR . . . C 3 -2.176 -2.434 3.697 1 0 ? N3 TRR 200 A 1 HETATM 5 C C4 TRR . . . C 3 -0.803 -2.449 3.821 1 0 ? C4 TRR 200 A 1 HETATM 6 N N4 TRR . . . C 3 -0.041 -1.558 3.099 1 0 ? N4 TRR 200 A 1 HETATM 7 C C5 TRR . . . C 3 -0.193 -3.362 4.674 1 0 ? C5 TRR 200 A 1 HETATM 8 C C6 TRR . . . C 3 -0.98 -4.253 5.397 1 0 ? C6 TRR 200 A 1 HETATM 9 C C7 TRR . . . C 3 1.308 -3.385 4.814 1 0 ? C7 TRR 200 A 1 HETATM 10 C C11 TRR . . . C 3 1.84 -4.719 5.265 1 0 ? C11 TRR 200 A 1 HETATM 11 C C12 TRR . . . C 3 2.119 -4.937 6.612 1 0 ? C12 TRR 200 A 1 HETATM 12 C C13 TRR . . . C 3 2.613 -6.178 7.034 1 0 ? C13 TRR 200 A 1 HETATM 13 C C14 TRR . . . C 3 2.824 -7.194 6.101 1 0 ? C14 TRR 200 A 1 HETATM 14 C C15 TRR . . . C 3 2.545 -6.977 4.752 1 0 ? C15 TRR 200 A 1 HETATM 15 C C16 TRR . . . C 3 2.051 -5.734 4.334 1 0 ? C16 TRR 200 A 1 HETATM 16 O O13 TRR . . . C 3 2.897 -6.411 8.378 1 0 ? O13 TRR 200 A 1 HETATM 17 O O14 TRR . . . C 3 3.311 -8.417 6.515 1 0 ? O14 TRR 200 A 1 HETATM 18 O O15 TRR . . . C 3 2.761 -8.002 3.833 1 0 ? O15 TRR 200 A 1 HETATM 19 C C17 TRR . . . C 3 2.682 -5.381 9.31 1 0 ? C17 TRR 200 A 1 HETATM 20 C C18 TRR . . . C 3 4.541 -8.842 6 1 0 ? C18 TRR 200 A 1 HETATM 21 C C19 TRR . . . C 3 2.477 -7.772 2.475 1 0 ? C19 TRR 200 A 1 HETATM 22 H H1 TRR . . . C 3 -2.909 -4.862 5.779 1 0 ? H1 TRR 200 A 1 HETATM 23 H H21 TRR . . . C 3 -4.88 -3.932 4.799 1 0 ? H21 TRR 200 A 1 HETATM 24 H H22 TRR . . . C 3 -4.755 -2.651 3.68 1 0 ? H22 TRR 200 A 1 HETATM 25 H H41 TRR . . . C 3 -0.473 -0.908 2.491 1 0 ? H41 TRR 200 A 1 HETATM 26 H H42 TRR . . . C 3 0.945 -1.559 3.179 1 0 ? H42 TRR 200 A 1 HETATM 27 H H6 TRR . . . C 3 -0.507 -4.978 6.075 1 0 ? H6 TRR 200 A 1 HETATM 28 H H71 TRR . . . C 3 1.605 -2.618 5.533 1 0 ? H71 TRR 200 A 1 HETATM 29 H H72 TRR . . . C 3 1.754 -3.144 3.854 1 0 ? H72 TRR 200 A 1 HETATM 30 H H12 TRR . . . C 3 1.951 -4.133 7.343 1 0 ? H12 TRR 200 A 1 HETATM 31 H H16 TRR . . . C 3 1.829 -5.558 3.272 1 0 ? H16 TRR 200 A 1 HETATM 32 H H171 TRR . . . C 3 3.399 -4.571 9.181 1 0 ? H171 TRR 200 A 1 HETATM 33 H H172 TRR . . . C 3 2.778 -5.744 10.333 1 0 ? H172 TRR 200 A 1 HETATM 34 H H173 TRR . . . C 3 1.684 -4.954 9.206 1 0 ? H173 TRR 200 A 1 HETATM 35 H H181 TRR . . . C 3 5.362 -8.231 6.376 1 0 ? H181 TRR 200 A 1 HETATM 36 H H182 TRR . . . C 3 4.56 -8.781 4.912 1 0 ? H182 TRR 200 A 1 HETATM 37 H H183 TRR . . . C 3 4.752 -9.876 6.273 1 0 ? H183 TRR 200 A 1 HETATM 38 H H191 TRR . . . C 3 2.805 -8.605 1.854 1 0 ? H191 TRR 200 A 1 HETATM 39 H H192 TRR . . . C 3 2.976 -6.875 2.11 1 0 ? H192 TRR 200 A 1 HETATM 40 H H193 TRR . . . C 3 1.407 -7.642 2.309 1 0 ? H193 TRR 200 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 104 _model_server_stats.query_time_ms 6660 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #