data_1YHR # _model_server_result.job_id s7ja6FrWz76gvuQqnODuug _model_server_result.datetime_utc '2024-12-04 20:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yhr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":150}' # _entry.id 1YHR # _exptl.entry_id 1YHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YHR _cell.length_a 95.2 _cell.length_b 98.4 _cell.length_c 66.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F NC HEM . A HEM 142 1_555 E O1 OXY . A OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? covale ? covale2 H NA HEM . B HEM 147 1_555 G O1 OXY . B OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 F FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 F FE HEM . A HEM 142 1_555 E O1 OXY . A OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? metalc ? metalc3 F FE HEM . A HEM 142 1_555 E O2 OXY . A OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 H FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 H FE HEM . B HEM 147 1_555 G O1 OXY . B OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc6 H FE HEM . B HEM 147 1_555 G O2 OXY . B OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 C NE2 HIS 87 C HIS 87 1_555 J FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 J FE HEM . C HEM 142 1_555 I O1 OXY . C OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.681 ? metalc ? metalc9 J FE HEM . C HEM 142 1_555 I O2 OXY . C OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc10 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 L FE HEM . D HEM 147 1_555 K O1 OXY . D OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.721 ? metalc ? metalc12 L FE HEM . D HEM 147 1_555 K O2 OXY . D OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 298 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1YHR _atom_sites.fract_transf_matrix[1][1] 0.010504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OXY A 1 150 150 OXY O2 . F 4 HEM A 1 142 142 HEM HEM . G 3 OXY B 1 150 150 OXY O2 . H 4 HEM B 1 147 147 HEM HEM . I 3 OXY C 1 150 150 OXY O2 . J 4 HEM C 1 142 142 HEM HEM . K 3 OXY D 1 150 150 OXY O2 . L 4 HEM D 1 147 147 HEM HEM . M 5 HOH A 1 204 204 HOH HOH . M 5 HOH A 2 205 205 HOH HOH . M 5 HOH A 3 211 211 HOH HOH . M 5 HOH A 4 215 215 HOH HOH . M 5 HOH A 5 216 216 HOH HOH . M 5 HOH A 6 217 217 HOH HOH . M 5 HOH A 7 220 220 HOH HOH . M 5 HOH A 8 223 223 HOH HOH . M 5 HOH A 9 226 226 HOH HOH . M 5 HOH A 10 227 227 HOH HOH . M 5 HOH A 11 229 229 HOH HOH . M 5 HOH A 12 231 231 HOH HOH . M 5 HOH A 13 246 246 HOH HOH . M 5 HOH A 14 287 287 HOH HOH . M 5 HOH A 15 290 290 HOH HOH . M 5 HOH A 16 291 291 HOH HOH . M 5 HOH A 17 300 300 HOH HOH . M 5 HOH A 18 310 310 HOH HOH . M 5 HOH A 19 311 311 HOH HOH . M 5 HOH A 20 312 312 HOH HOH . M 5 HOH A 21 315 315 HOH HOH . M 5 HOH A 22 317 317 HOH HOH . M 5 HOH A 23 319 319 HOH HOH . M 5 HOH A 24 325 325 HOH HOH . M 5 HOH A 25 326 326 HOH HOH . M 5 HOH A 26 331 331 HOH HOH . M 5 HOH A 27 332 332 HOH HOH . M 5 HOH A 28 335 335 HOH HOH . M 5 HOH A 29 336 336 HOH HOH . M 5 HOH A 30 339 339 HOH HOH . M 5 HOH A 31 342 342 HOH HOH . M 5 HOH A 32 343 343 HOH HOH . M 5 HOH A 33 348 348 HOH HOH . M 5 HOH A 34 353 353 HOH HOH . M 5 HOH A 35 355 355 HOH HOH . M 5 HOH A 36 373 373 HOH HOH . M 5 HOH A 37 377 377 HOH HOH . M 5 HOH A 38 382 382 HOH HOH . M 5 HOH A 39 395 395 HOH HOH . M 5 HOH A 40 407 407 HOH HOH . M 5 HOH A 41 429 429 HOH HOH . M 5 HOH A 42 430 430 HOH HOH . N 5 HOH B 1 233 233 HOH HOH . N 5 HOH B 2 234 234 HOH HOH . N 5 HOH B 3 236 236 HOH HOH . N 5 HOH B 4 237 237 HOH HOH . N 5 HOH B 5 238 238 HOH HOH . N 5 HOH B 6 239 239 HOH HOH . N 5 HOH B 7 241 241 HOH HOH . N 5 HOH B 8 242 242 HOH HOH . N 5 HOH B 9 244 244 HOH HOH . N 5 HOH B 10 248 248 HOH HOH . N 5 HOH B 11 249 249 HOH HOH . N 5 HOH B 12 250 250 HOH HOH . N 5 HOH B 13 251 251 HOH HOH . N 5 HOH B 14 252 252 HOH HOH . N 5 HOH B 15 254 254 HOH HOH . N 5 HOH B 16 259 259 HOH HOH . N 5 HOH B 17 261 261 HOH HOH . N 5 HOH B 18 262 262 HOH HOH . N 5 HOH B 19 265 265 HOH HOH . N 5 HOH B 20 267 267 HOH HOH . N 5 HOH B 21 269 269 HOH HOH . N 5 HOH B 22 275 275 HOH HOH . N 5 HOH B 23 278 278 HOH HOH . N 5 HOH B 24 283 283 HOH HOH . N 5 HOH B 25 289 289 HOH HOH . N 5 HOH B 26 294 294 HOH HOH . N 5 HOH B 27 296 296 HOH HOH . N 5 HOH B 28 298 298 HOH HOH . N 5 HOH B 29 302 302 HOH HOH . N 5 HOH B 30 313 313 HOH HOH . N 5 HOH B 31 318 318 HOH HOH . N 5 HOH B 32 323 323 HOH HOH . N 5 HOH B 33 340 340 HOH HOH . N 5 HOH B 34 347 347 HOH HOH . N 5 HOH B 35 350 350 HOH HOH . N 5 HOH B 36 362 362 HOH HOH . N 5 HOH B 37 385 385 HOH HOH . N 5 HOH B 38 386 386 HOH HOH . N 5 HOH B 39 391 391 HOH HOH . N 5 HOH B 40 409 409 HOH HOH . N 5 HOH B 41 414 414 HOH HOH . N 5 HOH B 42 423 423 HOH HOH . O 5 HOH C 1 228 228 HOH HOH . O 5 HOH C 2 240 240 HOH HOH . O 5 HOH C 3 243 243 HOH HOH . O 5 HOH C 4 255 255 HOH HOH . O 5 HOH C 5 257 257 HOH HOH . O 5 HOH C 6 260 260 HOH HOH . O 5 HOH C 7 268 268 HOH HOH . O 5 HOH C 8 280 280 HOH HOH . O 5 HOH C 9 305 305 HOH HOH . O 5 HOH C 10 308 308 HOH HOH . O 5 HOH C 11 309 309 HOH HOH . O 5 HOH C 12 320 320 HOH HOH . O 5 HOH C 13 321 321 HOH HOH . O 5 HOH C 14 322 322 HOH HOH . O 5 HOH C 15 330 330 HOH HOH . O 5 HOH C 16 333 333 HOH HOH . O 5 HOH C 17 337 337 HOH HOH . O 5 HOH C 18 338 338 HOH HOH . O 5 HOH C 19 346 346 HOH HOH . O 5 HOH C 20 349 349 HOH HOH . O 5 HOH C 21 360 360 HOH HOH . O 5 HOH C 22 363 363 HOH HOH . O 5 HOH C 23 368 368 HOH HOH . O 5 HOH C 24 374 374 HOH HOH . O 5 HOH C 25 384 384 HOH HOH . O 5 HOH C 26 405 405 HOH HOH . O 5 HOH C 27 408 408 HOH HOH . O 5 HOH C 28 416 416 HOH HOH . O 5 HOH C 29 417 417 HOH HOH . O 5 HOH C 30 420 420 HOH HOH . O 5 HOH C 31 425 425 HOH HOH . O 5 HOH C 32 428 428 HOH HOH . O 5 HOH C 33 431 431 HOH HOH . O 5 HOH C 34 433 433 HOH HOH . O 5 HOH C 35 435 435 HOH HOH . O 5 HOH C 36 436 436 HOH HOH . O 5 HOH C 37 437 437 HOH HOH . P 5 HOH D 1 206 206 HOH HOH . P 5 HOH D 2 207 207 HOH HOH . P 5 HOH D 3 208 208 HOH HOH . P 5 HOH D 4 209 209 HOH HOH . P 5 HOH D 5 210 210 HOH HOH . P 5 HOH D 6 212 212 HOH HOH . P 5 HOH D 7 225 225 HOH HOH . P 5 HOH D 8 232 232 HOH HOH . P 5 HOH D 9 263 263 HOH HOH . P 5 HOH D 10 266 266 HOH HOH . P 5 HOH D 11 270 270 HOH HOH . P 5 HOH D 12 272 272 HOH HOH . P 5 HOH D 13 273 273 HOH HOH . P 5 HOH D 14 274 274 HOH HOH . P 5 HOH D 15 277 277 HOH HOH . P 5 HOH D 16 281 281 HOH HOH . P 5 HOH D 17 282 282 HOH HOH . P 5 HOH D 18 285 285 HOH HOH . P 5 HOH D 19 288 288 HOH HOH . P 5 HOH D 20 293 293 HOH HOH . P 5 HOH D 21 314 314 HOH HOH . P 5 HOH D 22 316 316 HOH HOH . P 5 HOH D 23 328 328 HOH HOH . P 5 HOH D 24 345 345 HOH HOH . P 5 HOH D 25 388 388 HOH HOH . P 5 HOH D 26 394 394 HOH HOH . P 5 HOH D 27 396 396 HOH HOH . P 5 HOH D 28 400 400 HOH HOH . P 5 HOH D 29 406 406 HOH HOH . P 5 HOH D 30 415 415 HOH HOH . P 5 HOH D 31 422 422 HOH HOH . P 5 HOH D 32 438 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . I 3 18.554 7.339 -14.763 1 17.19 ? O1 OXY 150 C 1 HETATM 2 O O2 OXY . . . I 3 19.339 7.485 -15.665 1 16.94 ? O2 OXY 150 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 2 #