data_1YHS # _model_server_result.job_id YI5v_i5cz-x1nCWvLypBHw _model_server_result.datetime_utc '2024-11-23 10:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yhs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":306}' # _entry.id 1YHS # _exptl.entry_id 1YHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YHS _cell.length_a 97.728 _cell.length_b 97.728 _cell.length_c 80.508 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 128 A ASN 160 1_555 A N CME 129 A CME 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CME 129 A CME 161 1_555 A N GLY 130 A GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SER 228 A SER 260 1_555 A N SEP 229 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C SEP 229 A SEP 261 1_555 A N GLU 230 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 329 n n O4 C21 STU sing 330 n n C25 C24 STU sing 331 n n C25 N3 STU sing 332 n n C25 H25 STU sing 333 n n C24 C23 STU sing 334 n n C24 H241 STU sing 335 n n C24 H242 STU sing 336 n n C23 C22 STU sing 337 n n C23 N4 STU sing 338 n n C23 H23 STU sing 339 n n C22 C21 STU sing 340 n n C22 O6 STU sing 341 n n C22 H22 STU sing 342 n n C21 C26 STU sing 343 n n C21 N2 STU sing 344 n n C26 H261 STU sing 345 n n C26 H262 STU sing 346 n n C26 H263 STU sing 347 n n N2 C18 STU sing 348 n y N2 C17 STU sing 349 n y C18 C19 STU doub 350 n y C18 C11 STU sing 351 n y C19 C6 STU sing 352 n y C19 N3 STU sing 353 n y C6 C7 STU doub 354 n y C6 C5 STU sing 355 n y C7 C10 STU sing 356 n y C7 C8 STU sing 357 n n C10 C11 STU doub 358 n y C10 C9 STU sing 359 n n C11 C12 STU sing 360 n y C12 C17 STU doub 361 n y C12 C13 STU sing 362 n y C17 C16 STU sing 363 n y C16 C15 STU doub 364 n y C16 H16 STU sing 365 n n C15 C14 STU sing 366 n y C15 H15 STU sing 367 n n C14 C13 STU doub 368 n y C14 H14 STU sing 369 n n C13 H13 STU sing 370 n n C9 N1 STU sing 371 n n C9 H91 STU sing 372 n n C9 H92 STU sing 373 n n N1 C8 STU sing 374 n n N1 HN1 STU sing 375 n n C8 O5 STU doub 376 n n C5 C20 STU doub 377 n y C5 C4 STU sing 378 n y C20 C1 STU sing 379 n y C20 N3 STU sing 380 n y C1 C2 STU doub 381 n y C1 H1 STU sing 382 n n C2 C3 STU sing 383 n y C2 H2 STU sing 384 n n C3 C4 STU doub 385 n y C3 H3 STU sing 386 n n C4 H4 STU sing 387 n n O6 C27 STU sing 388 n n C27 H271 STU sing 389 n n C27 H272 STU sing 390 n n C27 H273 STU sing 391 n n N4 C28 STU sing 392 n n N4 HN4 STU sing 393 n n C28 H281 STU sing 394 n n C28 H282 STU sing 395 n n C28 H283 STU sing 396 n n # _atom_sites.entry_id 1YHS _atom_sites.fract_transf_matrix[1][1] 0.0102 _atom_sites.fract_transf_matrix[1][2] 0.0059 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 306 300 STU STO . C 3 HOH A 1 307 1 HOH HOH . C 3 HOH A 2 308 2 HOH HOH . C 3 HOH A 3 309 3 HOH HOH . C 3 HOH A 4 310 4 HOH HOH . C 3 HOH A 5 311 5 HOH HOH . C 3 HOH A 6 312 6 HOH HOH . C 3 HOH A 7 313 7 HOH HOH . C 3 HOH A 8 314 8 HOH HOH . C 3 HOH A 9 315 9 HOH HOH . C 3 HOH A 10 316 10 HOH HOH . C 3 HOH A 11 317 12 HOH HOH . C 3 HOH A 12 318 13 HOH HOH . C 3 HOH A 13 319 14 HOH HOH . C 3 HOH A 14 320 15 HOH HOH . C 3 HOH A 15 321 16 HOH HOH . C 3 HOH A 16 322 18 HOH HOH . C 3 HOH A 17 323 19 HOH HOH . C 3 HOH A 18 324 20 HOH HOH . C 3 HOH A 19 325 21 HOH HOH . C 3 HOH A 20 326 22 HOH HOH . C 3 HOH A 21 327 23 HOH HOH . C 3 HOH A 22 328 24 HOH HOH . C 3 HOH A 23 329 25 HOH HOH . C 3 HOH A 24 330 26 HOH HOH . C 3 HOH A 25 331 27 HOH HOH . C 3 HOH A 26 332 28 HOH HOH . C 3 HOH A 27 333 29 HOH HOH . C 3 HOH A 28 334 30 HOH HOH . C 3 HOH A 29 335 31 HOH HOH . C 3 HOH A 30 336 32 HOH HOH . C 3 HOH A 31 337 33 HOH HOH . C 3 HOH A 32 338 34 HOH HOH . C 3 HOH A 33 339 35 HOH HOH . C 3 HOH A 34 340 36 HOH HOH . C 3 HOH A 35 341 37 HOH HOH . C 3 HOH A 36 342 38 HOH HOH . C 3 HOH A 37 343 39 HOH HOH . C 3 HOH A 38 344 40 HOH HOH . C 3 HOH A 39 345 42 HOH HOH . C 3 HOH A 40 346 43 HOH HOH . C 3 HOH A 41 347 44 HOH HOH . C 3 HOH A 42 348 46 HOH HOH . C 3 HOH A 43 349 48 HOH HOH . C 3 HOH A 44 350 49 HOH HOH . C 3 HOH A 45 351 50 HOH HOH . C 3 HOH A 46 352 51 HOH HOH . C 3 HOH A 47 353 52 HOH HOH . C 3 HOH A 48 354 53 HOH HOH . C 3 HOH A 49 355 56 HOH HOH . C 3 HOH A 50 356 57 HOH HOH . C 3 HOH A 51 357 58 HOH HOH . C 3 HOH A 52 358 59 HOH HOH . C 3 HOH A 53 359 60 HOH HOH . C 3 HOH A 54 360 61 HOH HOH . C 3 HOH A 55 361 63 HOH HOH . C 3 HOH A 56 362 64 HOH HOH . C 3 HOH A 57 363 65 HOH HOH . C 3 HOH A 58 364 66 HOH HOH . C 3 HOH A 59 365 67 HOH HOH . C 3 HOH A 60 366 69 HOH HOH . C 3 HOH A 61 367 71 HOH HOH . C 3 HOH A 62 368 72 HOH HOH . C 3 HOH A 63 369 73 HOH HOH . C 3 HOH A 64 370 74 HOH HOH . C 3 HOH A 65 371 76 HOH HOH . C 3 HOH A 66 372 77 HOH HOH . C 3 HOH A 67 373 78 HOH HOH . C 3 HOH A 68 374 79 HOH HOH . C 3 HOH A 69 375 80 HOH HOH . C 3 HOH A 70 376 83 HOH HOH . C 3 HOH A 71 377 84 HOH HOH . C 3 HOH A 72 378 85 HOH HOH . C 3 HOH A 73 379 86 HOH HOH . C 3 HOH A 74 380 87 HOH HOH . C 3 HOH A 75 381 88 HOH HOH . C 3 HOH A 76 382 89 HOH HOH . C 3 HOH A 77 383 90 HOH HOH . C 3 HOH A 78 384 91 HOH HOH . C 3 HOH A 79 385 92 HOH HOH . C 3 HOH A 80 386 93 HOH HOH . C 3 HOH A 81 387 94 HOH HOH . C 3 HOH A 82 388 95 HOH HOH . C 3 HOH A 83 389 96 HOH HOH . C 3 HOH A 84 390 97 HOH HOH . C 3 HOH A 85 391 98 HOH HOH . C 3 HOH A 86 392 99 HOH HOH . C 3 HOH A 87 393 100 HOH HOH . C 3 HOH A 88 394 101 HOH HOH . C 3 HOH A 89 395 102 HOH HOH . C 3 HOH A 90 396 103 HOH HOH . C 3 HOH A 91 397 104 HOH HOH . C 3 HOH A 92 398 105 HOH HOH . C 3 HOH A 93 399 106 HOH HOH . C 3 HOH A 94 400 107 HOH HOH . C 3 HOH A 95 401 108 HOH HOH . C 3 HOH A 96 402 109 HOH HOH . C 3 HOH A 97 403 110 HOH HOH . C 3 HOH A 98 404 111 HOH HOH . C 3 HOH A 99 405 112 HOH HOH . C 3 HOH A 100 406 113 HOH HOH . C 3 HOH A 101 407 114 HOH HOH . C 3 HOH A 102 408 115 HOH HOH . C 3 HOH A 103 409 116 HOH HOH . C 3 HOH A 104 410 117 HOH HOH . C 3 HOH A 105 411 118 HOH HOH . C 3 HOH A 106 412 119 HOH HOH . C 3 HOH A 107 413 120 HOH HOH . C 3 HOH A 108 414 121 HOH HOH . C 3 HOH A 109 415 122 HOH HOH . C 3 HOH A 110 416 123 HOH HOH . C 3 HOH A 111 417 124 HOH HOH . C 3 HOH A 112 418 125 HOH HOH . C 3 HOH A 113 419 126 HOH HOH . C 3 HOH A 114 420 127 HOH HOH . C 3 HOH A 115 421 128 HOH HOH . C 3 HOH A 116 422 129 HOH HOH . C 3 HOH A 117 423 130 HOH HOH . C 3 HOH A 118 424 131 HOH HOH . C 3 HOH A 119 425 132 HOH HOH . C 3 HOH A 120 426 133 HOH HOH . C 3 HOH A 121 427 134 HOH HOH . C 3 HOH A 122 428 135 HOH HOH . C 3 HOH A 123 429 136 HOH HOH . C 3 HOH A 124 430 137 HOH HOH . C 3 HOH A 125 431 138 HOH HOH . C 3 HOH A 126 432 140 HOH HOH . C 3 HOH A 127 433 141 HOH HOH . C 3 HOH A 128 434 142 HOH HOH . C 3 HOH A 129 435 143 HOH HOH . C 3 HOH A 130 436 144 HOH HOH . C 3 HOH A 131 437 145 HOH HOH . C 3 HOH A 132 438 146 HOH HOH . C 3 HOH A 133 439 147 HOH HOH . C 3 HOH A 134 440 148 HOH HOH . C 3 HOH A 135 441 149 HOH HOH . C 3 HOH A 136 442 150 HOH HOH . C 3 HOH A 137 443 151 HOH HOH . C 3 HOH A 138 444 152 HOH HOH . C 3 HOH A 139 445 153 HOH HOH . C 3 HOH A 140 446 154 HOH HOH . C 3 HOH A 141 447 155 HOH HOH . C 3 HOH A 142 448 202 HOH HOH . C 3 HOH A 143 449 203 HOH HOH . C 3 HOH A 144 450 204 HOH HOH . C 3 HOH A 145 451 205 HOH HOH . C 3 HOH A 146 452 206 HOH HOH . C 3 HOH A 147 453 207 HOH HOH . C 3 HOH A 148 454 208 HOH HOH . C 3 HOH A 149 455 209 HOH HOH . C 3 HOH A 150 456 210 HOH HOH . C 3 HOH A 151 457 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 -19.428 36.151 -4.08 1 25.69 ? O4 STU 306 A 1 HETATM 2 C C25 STU . . . B 2 -19.395 37.53 -4.245 1 25.43 ? C25 STU 306 A 1 HETATM 3 C C24 STU . . . B 2 -17.971 38.083 -4.545 1 25.64 ? C24 STU 306 A 1 HETATM 4 C C23 STU . . . B 2 -17.112 37.004 -5.207 1 25.27 ? C23 STU 306 A 1 HETATM 5 C C22 STU . . . B 2 -16.936 35.811 -4.228 1 24.98 ? C22 STU 306 A 1 HETATM 6 C C21 STU . . . B 2 -18.301 35.477 -3.459 1 25.27 ? C21 STU 306 A 1 HETATM 7 C C26 STU . . . B 2 -18.633 33.986 -3.73 1 25.05 ? C26 STU 306 A 1 HETATM 8 N N2 STU . . . B 2 -18.229 35.797 -1.944 1 24.92 ? N2 STU 306 A 1 HETATM 9 C C18 STU . . . B 2 -18.944 36.794 -1.236 1 24.88 ? C18 STU 306 A 1 HETATM 10 C C19 STU . . . B 2 -19.809 37.848 -1.79 1 25.03 ? C19 STU 306 A 1 HETATM 11 C C6 STU . . . B 2 -20.516 38.781 -0.927 1 25.1 ? C6 STU 306 A 1 HETATM 12 C C7 STU . . . B 2 -20.328 38.658 0.532 1 24.91 ? C7 STU 306 A 1 HETATM 13 C C10 STU . . . B 2 -19.471 37.663 1.109 1 24.72 ? C10 STU 306 A 1 HETATM 14 C C11 STU . . . B 2 -18.77 36.707 0.205 1 24.66 ? C11 STU 306 A 1 HETATM 15 C C12 STU . . . B 2 -17.81 35.606 0.386 1 24.6 ? C12 STU 306 A 1 HETATM 16 C C17 STU . . . B 2 -17.474 35.093 -0.955 1 24.69 ? C17 STU 306 A 1 HETATM 17 C C16 STU . . . B 2 -16.482 34.008 -1.111 1 24.37 ? C16 STU 306 A 1 HETATM 18 C C15 STU . . . B 2 -15.849 33.457 0.091 1 24.49 ? C15 STU 306 A 1 HETATM 19 C C14 STU . . . B 2 -16.21 33.972 1.415 1 24.28 ? C14 STU 306 A 1 HETATM 20 C C13 STU . . . B 2 -17.19 35.048 1.581 1 24.39 ? C13 STU 306 A 1 HETATM 21 C C9 STU . . . B 2 -19.45 37.859 2.607 1 24.63 ? C9 STU 306 A 1 HETATM 22 N N1 STU . . . B 2 -20.262 39.086 2.768 1 24.96 ? N1 STU 306 A 1 HETATM 23 C C8 STU . . . B 2 -20.835 39.482 1.605 1 25.07 ? C8 STU 306 A 1 HETATM 24 O O5 STU . . . B 2 -21.651 40.389 1.455 1 25.66 ? O5 STU 306 A 1 HETATM 25 C C5 STU . . . B 2 -21.23 39.723 -1.826 1 25.5 ? C5 STU 306 A 1 HETATM 26 C C20 STU . . . B 2 -20.928 39.278 -3.194 1 25.75 ? C20 STU 306 A 1 HETATM 27 C C1 STU . . . B 2 -21.519 39.987 -4.363 1 26.03 ? C1 STU 306 A 1 HETATM 28 C C2 STU . . . B 2 -22.416 41.141 -4.128 1 25.71 ? C2 STU 306 A 1 HETATM 29 C C3 STU . . . B 2 -22.719 41.583 -2.747 1 25.67 ? C3 STU 306 A 1 HETATM 30 C C4 STU . . . B 2 -22.123 40.872 -1.58 1 25.77 ? C4 STU 306 A 1 HETATM 31 N N3 STU . . . B 2 -20.055 38.13 -3.13 1 25.52 ? N3 STU 306 A 1 HETATM 32 O O6 STU . . . B 2 -15.935 36.196 -3.283 1 24.52 ? O6 STU 306 A 1 HETATM 33 C C27 STU . . . B 2 -14.67 35.524 -3.447 1 23.53 ? C27 STU 306 A 1 HETATM 34 N N4 STU . . . B 2 -15.881 37.639 -5.707 1 25.27 ? N4 STU 306 A 1 HETATM 35 C C28 STU . . . B 2 -15.338 36.684 -6.689 1 24.85 ? C28 STU 306 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #