data_1YHT
#
_model_server_result.job_id            pYtK5gzf_YuPKPDzrlf9jA 
_model_server_result.datetime_utc      '2024-12-27 00:29:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":751}' 
#
_entry.id    1YHT 
#
_exptl.entry_id    1YHT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YHT 
_cell.length_a            41.023 
_cell.length_b            86.129 
_cell.length_c            185.774 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YHT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 136 n n 
C1 C2 GOL sing 137 n n 
C1 H11 GOL sing 138 n n 
C1 H12 GOL sing 139 n n 
O1 HO1 GOL sing 140 n n 
C2 O2 GOL sing 141 n n 
C2 C3 GOL sing 142 n n 
C2 H2 GOL sing 143 n n 
O2 HO2 GOL sing 144 n n 
C3 O3 GOL sing 145 n n 
C3 H31 GOL sing 146 n n 
C3 H32 GOL sing 147 n n 
O3 HO3 GOL sing 148 n n 
#
_atom_sites.entry_id                     1YHT 
_atom_sites.fract_transf_matrix[1][1]    0.024377 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005383 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACY A 1 750 750 ACY ACY . 
C 3 GOL A 1 751 751 GOL GOL . 
D 3 GOL A 1 752 752 GOL GOL . 
E 4 HOH A 1 401 401 HOH HOH . 
E 4 HOH A 2 402 402 HOH HOH . 
E 4 HOH A 3 403 403 HOH HOH . 
E 4 HOH A 4 404 404 HOH HOH . 
E 4 HOH A 5 405 405 HOH HOH . 
E 4 HOH A 6 406 406 HOH HOH . 
E 4 HOH A 7 407 407 HOH HOH . 
E 4 HOH A 8 408 408 HOH HOH . 
E 4 HOH A 9 409 409 HOH HOH . 
E 4 HOH A 10 410 410 HOH HOH . 
E 4 HOH A 11 411 411 HOH HOH . 
E 4 HOH A 12 412 412 HOH HOH . 
E 4 HOH A 13 413 413 HOH HOH . 
E 4 HOH A 14 414 414 HOH HOH . 
E 4 HOH A 15 415 415 HOH HOH . 
E 4 HOH A 16 416 416 HOH HOH . 
E 4 HOH A 17 417 417 HOH HOH . 
E 4 HOH A 18 418 418 HOH HOH . 
E 4 HOH A 19 419 419 HOH HOH . 
E 4 HOH A 20 420 420 HOH HOH . 
E 4 HOH A 21 421 421 HOH HOH . 
E 4 HOH A 22 422 422 HOH HOH . 
E 4 HOH A 23 423 423 HOH HOH . 
E 4 HOH A 24 424 424 HOH HOH . 
E 4 HOH A 25 425 425 HOH HOH . 
E 4 HOH A 26 426 426 HOH HOH . 
E 4 HOH A 27 427 427 HOH HOH . 
E 4 HOH A 28 428 428 HOH HOH . 
E 4 HOH A 29 429 429 HOH HOH . 
E 4 HOH A 30 430 430 HOH HOH . 
E 4 HOH A 31 431 431 HOH HOH . 
E 4 HOH A 32 432 432 HOH HOH . 
E 4 HOH A 33 433 433 HOH HOH . 
E 4 HOH A 34 434 434 HOH HOH . 
E 4 HOH A 35 435 435 HOH HOH . 
E 4 HOH A 36 436 436 HOH HOH . 
E 4 HOH A 37 437 437 HOH HOH . 
E 4 HOH A 38 438 438 HOH HOH . 
E 4 HOH A 39 439 439 HOH HOH . 
E 4 HOH A 40 440 440 HOH HOH . 
E 4 HOH A 41 441 441 HOH HOH . 
E 4 HOH A 42 442 442 HOH HOH . 
E 4 HOH A 43 443 443 HOH HOH . 
E 4 HOH A 44 444 444 HOH HOH . 
E 4 HOH A 45 445 445 HOH HOH . 
E 4 HOH A 46 446 446 HOH HOH . 
E 4 HOH A 47 447 447 HOH HOH . 
E 4 HOH A 48 448 448 HOH HOH . 
E 4 HOH A 49 449 449 HOH HOH . 
E 4 HOH A 50 450 450 HOH HOH . 
E 4 HOH A 51 451 451 HOH HOH . 
E 4 HOH A 52 452 452 HOH HOH . 
E 4 HOH A 53 453 453 HOH HOH . 
E 4 HOH A 54 454 454 HOH HOH . 
E 4 HOH A 55 455 455 HOH HOH . 
E 4 HOH A 56 456 456 HOH HOH . 
E 4 HOH A 57 457 457 HOH HOH . 
E 4 HOH A 58 458 458 HOH HOH . 
E 4 HOH A 59 459 459 HOH HOH . 
E 4 HOH A 60 460 460 HOH HOH . 
E 4 HOH A 61 461 461 HOH HOH . 
E 4 HOH A 62 462 462 HOH HOH . 
E 4 HOH A 63 463 463 HOH HOH . 
E 4 HOH A 64 464 464 HOH HOH . 
E 4 HOH A 65 465 465 HOH HOH . 
E 4 HOH A 66 466 466 HOH HOH . 
E 4 HOH A 67 467 467 HOH HOH . 
E 4 HOH A 68 468 468 HOH HOH . 
E 4 HOH A 69 469 469 HOH HOH . 
E 4 HOH A 70 470 470 HOH HOH . 
E 4 HOH A 71 471 471 HOH HOH . 
E 4 HOH A 72 472 472 HOH HOH . 
E 4 HOH A 73 473 473 HOH HOH . 
E 4 HOH A 74 474 474 HOH HOH . 
E 4 HOH A 75 475 475 HOH HOH . 
E 4 HOH A 76 476 476 HOH HOH . 
E 4 HOH A 77 477 477 HOH HOH . 
E 4 HOH A 78 478 478 HOH HOH . 
E 4 HOH A 79 479 479 HOH HOH . 
E 4 HOH A 80 480 480 HOH HOH . 
E 4 HOH A 81 481 481 HOH HOH . 
E 4 HOH A 82 482 482 HOH HOH . 
E 4 HOH A 83 483 483 HOH HOH . 
E 4 HOH A 84 484 484 HOH HOH . 
E 4 HOH A 85 485 485 HOH HOH . 
E 4 HOH A 86 486 486 HOH HOH . 
E 4 HOH A 87 487 487 HOH HOH . 
E 4 HOH A 88 488 488 HOH HOH . 
E 4 HOH A 89 489 489 HOH HOH . 
E 4 HOH A 90 490 490 HOH HOH . 
E 4 HOH A 91 491 491 HOH HOH . 
E 4 HOH A 92 492 492 HOH HOH . 
E 4 HOH A 93 493 493 HOH HOH . 
E 4 HOH A 94 494 494 HOH HOH . 
E 4 HOH A 95 495 495 HOH HOH . 
E 4 HOH A 96 496 496 HOH HOH . 
E 4 HOH A 97 497 497 HOH HOH . 
E 4 HOH A 98 498 498 HOH HOH . 
E 4 HOH A 99 499 499 HOH HOH . 
E 4 HOH A 100 500 500 HOH HOH . 
E 4 HOH A 101 501 501 HOH HOH . 
E 4 HOH A 102 502 502 HOH HOH . 
E 4 HOH A 103 503 503 HOH HOH . 
E 4 HOH A 104 504 504 HOH HOH . 
E 4 HOH A 105 505 505 HOH HOH . 
E 4 HOH A 106 506 506 HOH HOH . 
E 4 HOH A 107 507 507 HOH HOH . 
E 4 HOH A 108 508 508 HOH HOH . 
E 4 HOH A 109 509 509 HOH HOH . 
E 4 HOH A 110 510 510 HOH HOH . 
E 4 HOH A 111 511 511 HOH HOH . 
E 4 HOH A 112 512 512 HOH HOH . 
E 4 HOH A 113 513 513 HOH HOH . 
E 4 HOH A 114 514 514 HOH HOH . 
E 4 HOH A 115 515 515 HOH HOH . 
E 4 HOH A 116 516 516 HOH HOH . 
E 4 HOH A 117 517 517 HOH HOH . 
E 4 HOH A 118 518 518 HOH HOH . 
E 4 HOH A 119 519 519 HOH HOH . 
E 4 HOH A 120 520 520 HOH HOH . 
E 4 HOH A 121 521 521 HOH HOH . 
E 4 HOH A 122 522 522 HOH HOH . 
E 4 HOH A 123 523 523 HOH HOH . 
E 4 HOH A 124 524 524 HOH HOH . 
E 4 HOH A 125 525 525 HOH HOH . 
E 4 HOH A 126 526 526 HOH HOH . 
E 4 HOH A 127 527 527 HOH HOH . 
E 4 HOH A 128 528 528 HOH HOH . 
E 4 HOH A 129 529 529 HOH HOH . 
E 4 HOH A 130 530 530 HOH HOH . 
E 4 HOH A 131 531 531 HOH HOH . 
E 4 HOH A 132 532 532 HOH HOH . 
E 4 HOH A 133 533 533 HOH HOH . 
E 4 HOH A 134 534 534 HOH HOH . 
E 4 HOH A 135 535 535 HOH HOH . 
E 4 HOH A 136 536 536 HOH HOH . 
E 4 HOH A 137 537 537 HOH HOH . 
E 4 HOH A 138 538 538 HOH HOH . 
E 4 HOH A 139 539 539 HOH HOH . 
E 4 HOH A 140 540 540 HOH HOH . 
E 4 HOH A 141 541 541 HOH HOH . 
E 4 HOH A 142 542 542 HOH HOH . 
E 4 HOH A 143 543 543 HOH HOH . 
E 4 HOH A 144 544 544 HOH HOH . 
E 4 HOH A 145 545 545 HOH HOH . 
E 4 HOH A 146 546 546 HOH HOH . 
E 4 HOH A 147 547 547 HOH HOH . 
E 4 HOH A 148 548 548 HOH HOH . 
E 4 HOH A 149 549 549 HOH HOH . 
E 4 HOH A 150 550 550 HOH HOH . 
E 4 HOH A 151 551 551 HOH HOH . 
E 4 HOH A 152 552 552 HOH HOH . 
E 4 HOH A 153 553 553 HOH HOH . 
E 4 HOH A 154 554 554 HOH HOH . 
E 4 HOH A 155 555 555 HOH HOH . 
E 4 HOH A 156 556 556 HOH HOH . 
E 4 HOH A 157 557 557 HOH HOH . 
E 4 HOH A 158 558 558 HOH HOH . 
E 4 HOH A 159 559 559 HOH HOH . 
E 4 HOH A 160 560 560 HOH HOH . 
E 4 HOH A 161 561 561 HOH HOH . 
E 4 HOH A 162 562 562 HOH HOH . 
E 4 HOH A 163 563 563 HOH HOH . 
E 4 HOH A 164 564 564 HOH HOH . 
E 4 HOH A 165 565 565 HOH HOH . 
E 4 HOH A 166 566 566 HOH HOH . 
E 4 HOH A 167 567 567 HOH HOH . 
E 4 HOH A 168 568 568 HOH HOH . 
E 4 HOH A 169 569 569 HOH HOH . 
E 4 HOH A 170 570 570 HOH HOH . 
E 4 HOH A 171 571 571 HOH HOH . 
E 4 HOH A 172 572 572 HOH HOH . 
E 4 HOH A 173 573 573 HOH HOH . 
E 4 HOH A 174 574 574 HOH HOH . 
E 4 HOH A 175 575 575 HOH HOH . 
E 4 HOH A 176 576 576 HOH HOH . 
E 4 HOH A 177 577 577 HOH HOH . 
E 4 HOH A 178 578 578 HOH HOH . 
E 4 HOH A 179 579 579 HOH HOH . 
E 4 HOH A 180 580 580 HOH HOH . 
E 4 HOH A 181 581 581 HOH HOH . 
E 4 HOH A 182 582 582 HOH HOH . 
E 4 HOH A 183 583 583 HOH HOH . 
E 4 HOH A 184 584 584 HOH HOH . 
E 4 HOH A 185 585 585 HOH HOH . 
E 4 HOH A 186 586 586 HOH HOH . 
E 4 HOH A 187 587 587 HOH HOH . 
E 4 HOH A 188 588 588 HOH HOH . 
E 4 HOH A 189 589 589 HOH HOH . 
E 4 HOH A 190 590 590 HOH HOH . 
E 4 HOH A 191 591 591 HOH HOH . 
E 4 HOH A 192 592 592 HOH HOH . 
E 4 HOH A 193 593 593 HOH HOH . 
E 4 HOH A 194 594 594 HOH HOH . 
E 4 HOH A 195 595 595 HOH HOH . 
E 4 HOH A 196 596 596 HOH HOH . 
E 4 HOH A 197 597 597 HOH HOH . 
E 4 HOH A 198 598 598 HOH HOH . 
E 4 HOH A 199 599 599 HOH HOH . 
E 4 HOH A 200 600 600 HOH HOH . 
E 4 HOH A 201 601 601 HOH HOH . 
E 4 HOH A 202 602 602 HOH HOH . 
E 4 HOH A 203 603 603 HOH HOH . 
E 4 HOH A 204 604 604 HOH HOH . 
E 4 HOH A 205 605 605 HOH HOH . 
E 4 HOH A 206 606 606 HOH HOH . 
E 4 HOH A 207 607 607 HOH HOH . 
E 4 HOH A 208 608 608 HOH HOH . 
E 4 HOH A 209 609 609 HOH HOH . 
E 4 HOH A 210 610 610 HOH HOH . 
E 4 HOH A 211 611 611 HOH HOH . 
E 4 HOH A 212 612 612 HOH HOH . 
E 4 HOH A 213 613 613 HOH HOH . 
E 4 HOH A 214 614 614 HOH HOH . 
E 4 HOH A 215 615 615 HOH HOH . 
E 4 HOH A 216 616 616 HOH HOH . 
E 4 HOH A 217 617 617 HOH HOH . 
E 4 HOH A 218 618 618 HOH HOH . 
E 4 HOH A 219 619 619 HOH HOH . 
E 4 HOH A 220 620 620 HOH HOH . 
E 4 HOH A 221 621 621 HOH HOH . 
E 4 HOH A 222 622 622 HOH HOH . 
E 4 HOH A 223 623 623 HOH HOH . 
E 4 HOH A 224 624 624 HOH HOH . 
E 4 HOH A 225 625 625 HOH HOH . 
E 4 HOH A 226 626 626 HOH HOH . 
E 4 HOH A 227 627 627 HOH HOH . 
E 4 HOH A 228 628 628 HOH HOH . 
E 4 HOH A 229 629 629 HOH HOH . 
E 4 HOH A 230 630 630 HOH HOH . 
E 4 HOH A 231 631 631 HOH HOH . 
E 4 HOH A 232 632 632 HOH HOH . 
E 4 HOH A 233 633 633 HOH HOH . 
E 4 HOH A 234 634 634 HOH HOH . 
E 4 HOH A 235 635 635 HOH HOH . 
E 4 HOH A 236 636 636 HOH HOH . 
E 4 HOH A 237 637 637 HOH HOH . 
E 4 HOH A 238 638 638 HOH HOH . 
E 4 HOH A 239 639 639 HOH HOH . 
E 4 HOH A 240 640 640 HOH HOH . 
E 4 HOH A 241 641 641 HOH HOH . 
E 4 HOH A 242 643 643 HOH HOH . 
E 4 HOH A 243 644 644 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 12.817 -0.353 30.413 1 21.89 ? C1 GOL 751 A 1 
HETATM 2 O O1 GOL . . . C 3 13.481 -1.07 31.487 1 19.57 ? O1 GOL 751 A 1 
HETATM 3 C C2 GOL . . . C 3 13.853 0.558 29.739 1 22.04 ? C2 GOL 751 A 1 
HETATM 4 O O2 GOL . . . C 3 13.556 1.984 29.804 1 24.96 ? O2 GOL 751 A 1 
HETATM 5 C C3 GOL . . . C 3 14.219 0.081 28.324 1 24.37 ? C3 GOL 751 A 1 
HETATM 6 O O3 GOL . . . C 3 14.372 -1.356 28.127 1 22.49 ? O3 GOL 751 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           565 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#