data_1YI9 # _model_server_result.job_id y5nLDlqN6Qhjjc2bv8jEjQ _model_server_result.datetime_utc '2024-10-11 02:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":360}' # _entry.id 1YI9 # _exptl.entry_id 1YI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YI9 _cell.length_a 59.479 _cell.length_b 66.458 _cell.length_c 70.049 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 47 1_555 A SG CYS 140 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 35 A CYS 81 1_555 A SG CYS 80 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 68 A CYS 114 1_555 A SG CYS 85 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 A SG CYS 181 A CYS 227 1_555 A SG CYS 288 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf5 A SG CYS 247 A CYS 293 1_555 A SG CYS 269 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc1 A ND1 HIS 62 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A ND1 HIS 126 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 A NE2 HIS 196 A HIS 242 1_555 E CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 A NE2 HIS 198 A HIS 244 1_555 E CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 A ND1 HIS 199 A HIS 245 1_555 D CU CU . A CU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc6 A NE2 HIS 233 A HIS 279 1_555 C CU CU . A CU 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc7 E CU CU . A CU 358 1_555 H O HOH . A HOH 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc8 C CU CU . A CU 360 1_555 H O HOH . A HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 C CU CU . A CU 360 1_555 H O HOH . A HOH 778 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc10 C CU CU . A CU 360 1_555 H O HOH . A HOH 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc11 C CU CU . A CU 360 1_555 H O HOH . A HOH 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YI9 _atom_sites.fract_transf_matrix[1][1] 0.016813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 357 357 CU CU . C 2 CU A 1 360 360 CU CU . D 2 CU A 1 361 361 CU CU . E 2 CU A 1 358 358 CU 1CU . F 3 GOL A 1 703 703 GOL GOL . G 3 GOL A 1 710 710 GOL GOL . H 4 HOH A 1 711 1 HOH HOH . H 4 HOH A 2 712 2 HOH HOH . H 4 HOH A 3 713 3 HOH HOH . H 4 HOH A 4 714 6 HOH HOH . H 4 HOH A 5 715 8 HOH HOH . H 4 HOH A 6 716 9 HOH HOH . H 4 HOH A 7 717 10 HOH HOH . H 4 HOH A 8 718 11 HOH HOH . H 4 HOH A 9 719 12 HOH HOH . H 4 HOH A 10 720 13 HOH HOH . H 4 HOH A 11 721 14 HOH HOH . H 4 HOH A 12 722 15 HOH HOH . H 4 HOH A 13 723 16 HOH HOH . H 4 HOH A 14 724 17 HOH HOH . H 4 HOH A 15 725 18 HOH HOH . H 4 HOH A 16 726 19 HOH HOH . H 4 HOH A 17 727 20 HOH HOH . H 4 HOH A 18 728 21 HOH HOH . H 4 HOH A 19 729 22 HOH HOH . H 4 HOH A 20 730 23 HOH HOH . H 4 HOH A 21 731 24 HOH HOH . H 4 HOH A 22 732 25 HOH HOH . H 4 HOH A 23 733 26 HOH HOH . H 4 HOH A 24 734 27 HOH HOH . H 4 HOH A 25 735 28 HOH HOH . H 4 HOH A 26 736 29 HOH HOH . H 4 HOH A 27 737 30 HOH HOH . H 4 HOH A 28 738 33 HOH HOH . H 4 HOH A 29 739 34 HOH HOH . H 4 HOH A 30 740 35 HOH HOH . H 4 HOH A 31 741 36 HOH HOH . H 4 HOH A 32 742 37 HOH HOH . H 4 HOH A 33 743 38 HOH HOH . H 4 HOH A 34 744 39 HOH HOH . H 4 HOH A 35 745 41 HOH HOH . H 4 HOH A 36 746 42 HOH HOH . H 4 HOH A 37 747 43 HOH HOH . H 4 HOH A 38 748 44 HOH HOH . H 4 HOH A 39 749 45 HOH HOH . H 4 HOH A 40 750 47 HOH HOH . H 4 HOH A 41 751 49 HOH HOH . H 4 HOH A 42 752 51 HOH HOH . H 4 HOH A 43 753 53 HOH HOH . H 4 HOH A 44 754 54 HOH HOH . H 4 HOH A 45 755 55 HOH HOH . H 4 HOH A 46 756 56 HOH HOH . H 4 HOH A 47 757 57 HOH HOH . H 4 HOH A 48 758 58 HOH HOH . H 4 HOH A 49 759 61 HOH HOH . H 4 HOH A 50 760 62 HOH HOH . H 4 HOH A 51 761 64 HOH HOH . H 4 HOH A 52 762 65 HOH HOH . H 4 HOH A 53 763 66 HOH HOH . H 4 HOH A 54 764 68 HOH HOH . H 4 HOH A 55 765 69 HOH HOH . H 4 HOH A 56 766 70 HOH HOH . H 4 HOH A 57 767 71 HOH HOH . H 4 HOH A 58 768 72 HOH HOH . H 4 HOH A 59 769 74 HOH HOH . H 4 HOH A 60 770 75 HOH HOH . H 4 HOH A 61 771 77 HOH HOH . H 4 HOH A 62 772 78 HOH HOH . H 4 HOH A 63 773 79 HOH HOH . H 4 HOH A 64 774 80 HOH HOH . H 4 HOH A 65 775 81 HOH HOH . H 4 HOH A 66 776 83 HOH HOH . H 4 HOH A 67 777 84 HOH HOH . H 4 HOH A 68 778 85 HOH HOH . H 4 HOH A 69 779 86 HOH HOH . H 4 HOH A 70 780 88 HOH HOH . H 4 HOH A 71 781 89 HOH HOH . H 4 HOH A 72 782 90 HOH HOH . H 4 HOH A 73 783 91 HOH HOH . H 4 HOH A 74 784 92 HOH HOH . H 4 HOH A 75 785 93 HOH HOH . H 4 HOH A 76 786 95 HOH HOH . H 4 HOH A 77 787 97 HOH HOH . H 4 HOH A 78 788 98 HOH HOH . H 4 HOH A 79 789 99 HOH HOH . H 4 HOH A 80 790 100 HOH HOH . H 4 HOH A 81 791 101 HOH HOH . H 4 HOH A 82 792 103 HOH HOH . H 4 HOH A 83 793 104 HOH HOH . H 4 HOH A 84 794 105 HOH HOH . H 4 HOH A 85 795 106 HOH HOH . H 4 HOH A 86 796 111 HOH HOH . H 4 HOH A 87 797 112 HOH HOH . H 4 HOH A 88 798 113 HOH HOH . H 4 HOH A 89 799 115 HOH HOH . H 4 HOH A 90 800 121 HOH HOH . H 4 HOH A 91 801 122 HOH HOH . H 4 HOH A 92 802 123 HOH HOH . H 4 HOH A 93 803 124 HOH HOH . H 4 HOH A 94 804 125 HOH HOH . H 4 HOH A 95 805 126 HOH HOH . H 4 HOH A 96 806 128 HOH HOH . H 4 HOH A 97 807 129 HOH HOH . H 4 HOH A 98 808 130 HOH HOH . H 4 HOH A 99 809 131 HOH HOH . H 4 HOH A 100 810 132 HOH HOH . H 4 HOH A 101 811 133 HOH HOH . H 4 HOH A 102 812 134 HOH HOH . H 4 HOH A 103 813 135 HOH HOH . H 4 HOH A 104 814 136 HOH HOH . H 4 HOH A 105 815 141 HOH HOH . H 4 HOH A 106 816 142 HOH HOH . H 4 HOH A 107 817 143 HOH HOH . H 4 HOH A 108 818 144 HOH HOH . H 4 HOH A 109 819 145 HOH HOH . H 4 HOH A 110 820 146 HOH HOH . H 4 HOH A 111 821 147 HOH HOH . H 4 HOH A 112 822 148 HOH HOH . H 4 HOH A 113 823 149 HOH HOH . H 4 HOH A 114 824 150 HOH HOH . H 4 HOH A 115 825 151 HOH HOH . H 4 HOH A 116 826 152 HOH HOH . H 4 HOH A 117 827 153 HOH HOH . H 4 HOH A 118 828 154 HOH HOH . H 4 HOH A 119 829 155 HOH HOH . H 4 HOH A 120 830 156 HOH HOH . H 4 HOH A 121 831 157 HOH HOH . H 4 HOH A 122 832 160 HOH HOH . H 4 HOH A 123 833 161 HOH HOH . H 4 HOH A 124 834 162 HOH HOH . H 4 HOH A 125 835 163 HOH HOH . H 4 HOH A 126 836 164 HOH HOH . H 4 HOH A 127 837 165 HOH HOH . H 4 HOH A 128 838 167 HOH HOH . H 4 HOH A 129 839 171 HOH HOH . H 4 HOH A 130 840 172 HOH HOH . H 4 HOH A 131 841 173 HOH HOH . H 4 HOH A 132 842 358 HOH 1CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.576 _atom_site.Cartn_y 7.346 _atom_site.Cartn_z 35.761 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 360 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #