data_1YIM # _model_server_result.job_id j-nhbHgs3FRiKmeGAgmfqg _model_server_result.datetime_utc '2025-01-23 16:44:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1YIM # _exptl.entry_id 1YIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S)-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PYRROLIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YIM _cell.length_a 58.55 _cell.length_b 58.55 _cell.length_c 276.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 29.275 50.705787 46.1 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 N O4' _chem_comp.formula_weight 445.55 _chem_comp.id CM4 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S)-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PYRROLIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CM4 sing 70 n n C1 C11 CM4 sing 71 n n C1 C13 CM4 sing 72 n n C1 H1 CM4 sing 73 n n C2 O3 CM4 sing 74 n n C2 C20 CM4 sing 75 n n C2 H2 CM4 sing 76 n n O3 C4 CM4 sing 77 n n C4 C5 CM4 doub 78 n y C4 C10 CM4 sing 79 n y C5 C6 CM4 sing 80 n y C5 H5 CM4 sing 81 n n C6 C7 CM4 doub 82 n y C6 H6 CM4 sing 83 n n C7 O8 CM4 sing 84 n n C7 C9 CM4 sing 85 n y O8 HO8 CM4 sing 86 n n C9 C10 CM4 doub 87 n y C9 H9 CM4 sing 88 n n C10 C11 CM4 sing 89 n n C11 C12 CM4 sing 90 n n C11 H11 CM4 sing 91 n n C12 H121 CM4 sing 92 n n C12 H122 CM4 sing 93 n n C12 H123 CM4 sing 94 n n C13 C14 CM4 doub 95 n y C13 C19 CM4 sing 96 n y C14 C15 CM4 sing 97 n y C14 H14 CM4 sing 98 n n C15 C16 CM4 doub 99 n y C15 H15 CM4 sing 100 n n C16 O17 CM4 sing 101 n n C16 C18 CM4 sing 102 n y O17 H17 CM4 sing 103 n n C18 C19 CM4 doub 104 n y C18 H18 CM4 sing 105 n n C19 H19 CM4 sing 106 n n C20 C21 CM4 doub 107 n y C20 C25 CM4 sing 108 n y C21 C22 CM4 sing 109 n y C21 H21 CM4 sing 110 n n C22 C23 CM4 doub 111 n y C22 H22 CM4 sing 112 n n C23 C24 CM4 sing 113 n y C23 O26 CM4 sing 114 n n C24 C25 CM4 doub 115 n y C24 H24 CM4 sing 116 n n C25 H25 CM4 sing 117 n n O26 C27 CM4 sing 118 n n C27 C28 CM4 sing 119 n n C27 H271 CM4 sing 120 n n C27 H272 CM4 sing 121 n n C28 N29 CM4 sing 122 n n C28 H281 CM4 sing 123 n n C28 H282 CM4 sing 124 n n N29 C30 CM4 sing 125 n n N29 C33 CM4 sing 126 n n C30 C31 CM4 sing 127 n n C30 H301 CM4 sing 128 n n C30 H302 CM4 sing 129 n n C31 C32 CM4 sing 130 n n C31 H311 CM4 sing 131 n n C31 H312 CM4 sing 132 n n C32 C33 CM4 sing 133 n n C32 H321 CM4 sing 134 n n C32 H322 CM4 sing 135 n n C33 H331 CM4 sing 136 n n C33 H332 CM4 sing 137 n n # _atom_sites.entry_id 1YIM _atom_sites.fract_transf_matrix[1][1] 0.017079 _atom_sites.fract_transf_matrix[1][2] 0.009861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CM4 A 1 600 600 CM4 INH . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1064 1064 HOH HOH . C 3 HOH A 65 1065 1065 HOH HOH . C 3 HOH A 66 1066 1066 HOH HOH . C 3 HOH A 67 1067 1067 HOH HOH . C 3 HOH A 68 1068 1068 HOH HOH . C 3 HOH A 69 1069 1069 HOH HOH . C 3 HOH A 70 1070 1070 HOH HOH . C 3 HOH A 71 1071 1071 HOH HOH . C 3 HOH A 72 1072 1072 HOH HOH . C 3 HOH A 73 1073 1073 HOH HOH . C 3 HOH A 74 1074 1074 HOH HOH . C 3 HOH A 75 1075 1075 HOH HOH . C 3 HOH A 76 1076 1076 HOH HOH . C 3 HOH A 77 1077 1077 HOH HOH . C 3 HOH A 78 1078 1078 HOH HOH . C 3 HOH A 79 1079 1079 HOH HOH . C 3 HOH A 80 1080 1080 HOH HOH . C 3 HOH A 81 1081 1081 HOH HOH . C 3 HOH A 82 1082 1082 HOH HOH . C 3 HOH A 83 1083 1083 HOH HOH . C 3 HOH A 84 1084 1084 HOH HOH . C 3 HOH A 85 1085 1085 HOH HOH . C 3 HOH A 86 1086 1086 HOH HOH . C 3 HOH A 87 1087 1087 HOH HOH . C 3 HOH A 88 1088 1088 HOH HOH . C 3 HOH A 89 1089 1089 HOH HOH . C 3 HOH A 90 1090 1090 HOH HOH . C 3 HOH A 91 1091 1091 HOH HOH . C 3 HOH A 92 1092 1092 HOH HOH . C 3 HOH A 93 1093 1093 HOH HOH . C 3 HOH A 94 1094 1094 HOH HOH . C 3 HOH A 95 1095 1095 HOH HOH . C 3 HOH A 96 1096 1096 HOH HOH . C 3 HOH A 97 1097 1097 HOH HOH . C 3 HOH A 98 1098 1098 HOH HOH . C 3 HOH A 99 1099 1099 HOH HOH . C 3 HOH A 100 1100 1100 HOH HOH . C 3 HOH A 101 1101 1101 HOH HOH . C 3 HOH A 102 1102 1102 HOH HOH . C 3 HOH A 103 1103 1103 HOH HOH . C 3 HOH A 104 1104 1104 HOH HOH . C 3 HOH A 105 1105 1105 HOH HOH . C 3 HOH A 106 1106 1106 HOH HOH . C 3 HOH A 107 1107 1107 HOH HOH . C 3 HOH A 108 1108 1108 HOH HOH . C 3 HOH A 109 1109 1109 HOH HOH . C 3 HOH A 110 1110 1110 HOH HOH . C 3 HOH A 111 1111 1111 HOH HOH . C 3 HOH A 112 1112 1112 HOH HOH . C 3 HOH A 113 1113 1113 HOH HOH . C 3 HOH A 114 1114 1114 HOH HOH . C 3 HOH A 115 1115 1115 HOH HOH . C 3 HOH A 116 1116 1116 HOH HOH . C 3 HOH A 117 1117 1117 HOH HOH . C 3 HOH A 118 1118 1118 HOH HOH . C 3 HOH A 119 1119 1119 HOH HOH . C 3 HOH A 120 1120 1120 HOH HOH . C 3 HOH A 121 1121 1121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CM4 . . . B 2 31.346 -0.61 28.401 1 29.58 ? C1 CM4 600 A 1 HETATM 2 C C2 CM4 . . . B 2 31.534 -2.03 27.862 1 32.36 ? C2 CM4 600 A 1 HETATM 3 O O3 CM4 . . . B 2 30.301 -2.737 28.114 1 33.6 ? O3 CM4 600 A 1 HETATM 4 C C4 CM4 . . . B 2 29.1 -2.234 27.76 1 31.33 ? C4 CM4 600 A 1 HETATM 5 C C5 CM4 . . . B 2 28.075 -3.154 27.558 1 31.03 ? C5 CM4 600 A 1 HETATM 6 C C6 CM4 . . . B 2 26.804 -2.716 27.184 1 31.47 ? C6 CM4 600 A 1 HETATM 7 C C7 CM4 . . . B 2 26.541 -1.356 27.029 1 28.96 ? C7 CM4 600 A 1 HETATM 8 O O8 CM4 . . . B 2 25.299 -0.988 26.628 1 30.13 ? O8 CM4 600 A 1 HETATM 9 C C9 CM4 . . . B 2 27.57 -0.428 27.248 1 28.27 ? C9 CM4 600 A 1 HETATM 10 C C10 CM4 . . . B 2 28.879 -0.858 27.613 1 30.02 ? C10 CM4 600 A 1 HETATM 11 C C11 CM4 . . . B 2 30.047 0.11 27.848 1 30.52 ? C11 CM4 600 A 1 HETATM 12 C C12 CM4 . . . B 2 29.597 1.318 28.667 1 33.68 ? C12 CM4 600 A 1 HETATM 13 C C13 CM4 . . . B 2 32.667 0.154 28.235 1 33.1 ? C13 CM4 600 A 1 HETATM 14 C C14 CM4 . . . B 2 32.885 1.011 27.146 1 31.87 ? C14 CM4 600 A 1 HETATM 15 C C15 CM4 . . . B 2 34.126 1.673 27.085 1 32.61 ? C15 CM4 600 A 1 HETATM 16 C C16 CM4 . . . B 2 35.125 1.478 28.053 1 36.66 ? C16 CM4 600 A 1 HETATM 17 O O17 CM4 . . . B 2 36.307 2.147 27.956 1 37.75 ? O17 CM4 600 A 1 HETATM 18 C C18 CM4 . . . B 2 34.906 0.609 29.123 1 36.74 ? C18 CM4 600 A 1 HETATM 19 C C19 CM4 . . . B 2 33.644 -0.011 29.231 1 35.24 ? C19 CM4 600 A 1 HETATM 20 C C20 CM4 . . . B 2 31.927 -2.223 26.404 1 32.28 ? C20 CM4 600 A 1 HETATM 21 C C21 CM4 . . . B 2 32.898 -3.182 26.117 1 33.5 ? C21 CM4 600 A 1 HETATM 22 C C22 CM4 . . . B 2 33.279 -3.438 24.783 1 31.75 ? C22 CM4 600 A 1 HETATM 23 C C23 CM4 . . . B 2 32.769 -2.667 23.749 1 31.45 ? C23 CM4 600 A 1 HETATM 24 C C24 CM4 . . . B 2 31.79 -1.71 23.995 1 30.98 ? C24 CM4 600 A 1 HETATM 25 C C25 CM4 . . . B 2 31.39 -1.518 25.325 1 31.89 ? C25 CM4 600 A 1 HETATM 26 O O26 CM4 . . . B 2 33.106 -2.918 22.471 1 35.64 ? O26 CM4 600 A 1 HETATM 27 C C27 CM4 . . . B 2 33.712 -4.159 22.109 1 40.47 ? C27 CM4 600 A 1 HETATM 28 C C28 CM4 . . . B 2 34.02 -4.188 20.612 1 45.63 ? C28 CM4 600 A 1 HETATM 29 N N29 CM4 . . . B 2 32.797 -4.287 19.805 1 49.23 ? N29 CM4 600 A 1 HETATM 30 C C30 CM4 . . . B 2 33.208 -4.332 18.391 1 53.18 ? C30 CM4 600 A 1 HETATM 31 C C31 CM4 . . . B 2 32.024 -3.801 17.581 1 54.4 ? C31 CM4 600 A 1 HETATM 32 C C32 CM4 . . . B 2 31.096 -3.158 18.621 1 51.35 ? C32 CM4 600 A 1 HETATM 33 C C33 CM4 . . . B 2 31.92 -3.11 19.915 1 49.26 ? C33 CM4 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #