data_1YIN # _model_server_result.job_id 6bUkPiX3ImUAlT7oDiiTLQ _model_server_result.datetime_utc '2024-10-18 08:55:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1YIN # _exptl.entry_id 1YIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.567 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S)-5-FLUORO-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PIPERIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YIN _cell.length_a 58.85 _cell.length_b 58.85 _cell.length_c 277.83 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 29.425 50.965595 46.305 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H32 F N O4' _chem_comp.formula_weight 477.567 _chem_comp.id CM3 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S)-5-FLUORO-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PIPERIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CM3 sing 70 n n C1 C12 CM3 sing 71 n n C1 C14 CM3 sing 72 n n C1 H1 CM3 sing 73 n n C2 O3 CM3 sing 74 n n C2 C21 CM3 sing 75 n n C2 H2 CM3 sing 76 n n O3 C4 CM3 sing 77 n n C4 C5 CM3 doub 78 n y C4 C11 CM3 sing 79 n y C5 C6 CM3 sing 80 n y C5 H5 CM3 sing 81 n n C6 C7 CM3 doub 82 n y C6 H6 CM3 sing 83 n n C7 O8 CM3 sing 84 n n C7 C9 CM3 sing 85 n y O8 HO8 CM3 sing 86 n n C9 F10 CM3 sing 87 n n C9 C11 CM3 doub 88 n y C11 C12 CM3 sing 89 n n C12 C13 CM3 sing 90 n n C12 H12 CM3 sing 91 n n C13 H131 CM3 sing 92 n n C13 H132 CM3 sing 93 n n C13 H133 CM3 sing 94 n n C14 C15 CM3 doub 95 n y C14 C20 CM3 sing 96 n y C15 C16 CM3 sing 97 n y C15 H15 CM3 sing 98 n n C16 C17 CM3 doub 99 n y C16 H16 CM3 sing 100 n n C17 O18 CM3 sing 101 n n C17 C19 CM3 sing 102 n y O18 H18 CM3 sing 103 n n C19 C20 CM3 doub 104 n y C19 H19 CM3 sing 105 n n C20 H20 CM3 sing 106 n n C21 C22 CM3 doub 107 n y C21 C26 CM3 sing 108 n y C22 C23 CM3 sing 109 n y C22 H22 CM3 sing 110 n n C23 C24 CM3 doub 111 n y C23 H23 CM3 sing 112 n n C24 C25 CM3 sing 113 n y C24 O27 CM3 sing 114 n n C25 C26 CM3 doub 115 n y C25 H25 CM3 sing 116 n n C26 H26 CM3 sing 117 n n O27 C28 CM3 sing 118 n n C28 C29 CM3 sing 119 n n C28 H281 CM3 sing 120 n n C28 H282 CM3 sing 121 n n C29 N30 CM3 sing 122 n n C29 H291 CM3 sing 123 n n C29 H292 CM3 sing 124 n n N30 C31 CM3 sing 125 n n N30 C35 CM3 sing 126 n n C31 C32 CM3 sing 127 n n C31 H311 CM3 sing 128 n n C31 H312 CM3 sing 129 n n C32 C33 CM3 sing 130 n n C32 H321 CM3 sing 131 n n C32 H322 CM3 sing 132 n n C33 C34 CM3 sing 133 n n C33 H331 CM3 sing 134 n n C33 H332 CM3 sing 135 n n C34 C35 CM3 sing 136 n n C34 H341 CM3 sing 137 n n C34 H342 CM3 sing 138 n n C35 H351 CM3 sing 139 n n C35 H352 CM3 sing 140 n n # _atom_sites.entry_id 1YIN _atom_sites.fract_transf_matrix[1][1] 0.016992 _atom_sites.fract_transf_matrix[1][2] 0.009811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CM3 A 1 600 600 CM3 INH . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1064 1064 HOH HOH . C 3 HOH A 65 1065 1065 HOH HOH . C 3 HOH A 66 1066 1066 HOH HOH . C 3 HOH A 67 1067 1067 HOH HOH . C 3 HOH A 68 1068 1068 HOH HOH . C 3 HOH A 69 1069 1069 HOH HOH . C 3 HOH A 70 1070 1070 HOH HOH . C 3 HOH A 71 1071 1071 HOH HOH . C 3 HOH A 72 1072 1072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CM3 . . . B 2 31.621 -0.621 28.64 1 37.07 ? C1 CM3 600 A 1 HETATM 2 C C2 CM3 . . . B 2 31.833 -2.024 28.061 1 35.64 ? C2 CM3 600 A 1 HETATM 3 O O3 CM3 . . . B 2 30.64 -2.787 28.321 1 36.58 ? O3 CM3 600 A 1 HETATM 4 C C4 CM3 . . . B 2 29.441 -2.287 27.98 1 34.77 ? C4 CM3 600 A 1 HETATM 5 C C5 CM3 . . . B 2 28.433 -3.221 27.731 1 35.47 ? C5 CM3 600 A 1 HETATM 6 C C6 CM3 . . . B 2 27.151 -2.818 27.369 1 36.04 ? C6 CM3 600 A 1 HETATM 7 C C7 CM3 . . . B 2 26.874 -1.453 27.295 1 36.67 ? C7 CM3 600 A 1 HETATM 8 O O8 CM3 . . . B 2 25.662 -0.988 26.946 1 39.99 ? O8 CM3 600 A 1 HETATM 9 C C9 CM3 . . . B 2 27.899 -0.518 27.515 1 35.58 ? C9 CM3 600 A 1 HETATM 10 F F10 CM3 . . . B 2 27.549 0.748 27.281 1 60.54 ? F10 CM3 600 A 1 HETATM 11 C C11 CM3 . . . B 2 29.188 -0.895 27.94 1 35.15 ? C11 CM3 600 A 1 HETATM 12 C C12 CM3 . . . B 2 30.316 0.096 28.199 1 35.82 ? C12 CM3 600 A 1 HETATM 13 C C13 CM3 . . . B 2 30.089 1.272 29.137 1 27.35 ? C13 CM3 600 A 1 HETATM 14 C C14 CM3 . . . B 2 32.878 0.19 28.411 1 40.6 ? C14 CM3 600 A 1 HETATM 15 C C15 CM3 . . . B 2 33.059 1.083 27.34 1 39.98 ? C15 CM3 600 A 1 HETATM 16 C C16 CM3 . . . B 2 34.262 1.771 27.222 1 40.37 ? C16 CM3 600 A 1 HETATM 17 C C17 CM3 . . . B 2 35.299 1.611 28.15 1 40.11 ? C17 CM3 600 A 1 HETATM 18 O O18 CM3 . . . B 2 36.449 2.295 28.027 1 40.83 ? O18 CM3 600 A 1 HETATM 19 C C19 CM3 . . . B 2 35.109 0.734 29.216 1 38.86 ? C19 CM3 600 A 1 HETATM 20 C C20 CM3 . . . B 2 33.916 0.037 29.333 1 42.72 ? C20 CM3 600 A 1 HETATM 21 C C21 CM3 . . . B 2 32.158 -2.133 26.597 1 37.56 ? C21 CM3 600 A 1 HETATM 22 C C22 CM3 . . . B 2 33.13 -3.069 26.225 1 38.15 ? C22 CM3 600 A 1 HETATM 23 C C23 CM3 . . . B 2 33.468 -3.265 24.88 1 39.68 ? C23 CM3 600 A 1 HETATM 24 C C24 CM3 . . . B 2 32.917 -2.47 23.862 1 40.9 ? C24 CM3 600 A 1 HETATM 25 C C25 CM3 . . . B 2 31.934 -1.542 24.231 1 39.23 ? C25 CM3 600 A 1 HETATM 26 C C26 CM3 . . . B 2 31.556 -1.407 25.556 1 38.49 ? C26 CM3 600 A 1 HETATM 27 O O27 CM3 . . . B 2 33.265 -2.609 22.564 1 44.7 ? O27 CM3 600 A 1 HETATM 28 C C28 CM3 . . . B 2 33.882 -3.839 22.146 1 48.49 ? C28 CM3 600 A 1 HETATM 29 C C29 CM3 . . . B 2 34.124 -3.924 20.637 1 47.86 ? C29 CM3 600 A 1 HETATM 30 N N30 CM3 . . . B 2 32.94 -4.226 19.805 1 54.37 ? N30 CM3 600 A 1 HETATM 31 C C31 CM3 . . . B 2 33.473 -4.261 18.443 1 56.44 ? C31 CM3 600 A 1 HETATM 32 C C32 CM3 . . . B 2 32.358 -4.745 17.542 1 59.37 ? C32 CM3 600 A 1 HETATM 33 C C33 CM3 . . . B 2 31.439 -3.532 17.363 1 60.79 ? C33 CM3 600 A 1 HETATM 34 C C34 CM3 . . . B 2 30.877 -3.191 18.765 1 59.43 ? C34 CM3 600 A 1 HETATM 35 C C35 CM3 . . . B 2 31.944 -3.151 19.885 1 56.06 ? C35 CM3 600 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #