data_1YIP # _model_server_result.job_id vAUr3xIXIpfF6Mh8qZ4fog _model_server_result.datetime_utc '2024-10-13 00:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":357}' # _entry.id 1YIP # _exptl.entry_id 1YIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YIP _cell.length_a 58.523 _cell.length_b 65.683 _cell.length_c 69.871 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 47 1_555 A SG CYS 142 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 37 A CYS 81 1_555 A SG CYS 82 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 70 A CYS 114 1_555 A SG CYS 87 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 183 A CYS 227 1_555 A SG CYS 290 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 249 A CYS 293 1_555 A SG CYS 271 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc1 A ND1 HIS 63 A HIS 107 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A ND1 HIS 64 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 A ND1 HIS 128 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A NE2 HIS 198 A HIS 242 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 A NE2 HIS 200 A HIS 244 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 A SD MET 270 A MET 314 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 C CU CU . A CU 358 1_555 D O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc8 C CU CU . A CU 358 1_555 D O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YIP _atom_sites.fract_transf_matrix[1][1] 0.0171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 357 357 CU CU . C 2 CU A 1 358 358 CU CU . D 3 HOH A 1 359 1 HOH HOH . D 3 HOH A 2 360 2 HOH HOH . D 3 HOH A 3 361 3 HOH HOH . D 3 HOH A 4 362 4 HOH HOH . D 3 HOH A 5 363 5 HOH HOH . D 3 HOH A 6 364 6 HOH HOH . D 3 HOH A 7 365 7 HOH HOH . D 3 HOH A 8 366 8 HOH HOH . D 3 HOH A 9 367 9 HOH HOH . D 3 HOH A 10 368 10 HOH HOH . D 3 HOH A 11 369 11 HOH HOH . D 3 HOH A 12 370 12 HOH HOH . D 3 HOH A 13 371 13 HOH HOH . D 3 HOH A 14 372 14 HOH HOH . D 3 HOH A 15 373 15 HOH HOH . D 3 HOH A 16 374 16 HOH HOH . D 3 HOH A 17 375 17 HOH HOH . D 3 HOH A 18 376 18 HOH HOH . D 3 HOH A 19 377 19 HOH HOH . D 3 HOH A 20 378 20 HOH HOH . D 3 HOH A 21 379 21 HOH HOH . D 3 HOH A 22 380 22 HOH HOH . D 3 HOH A 23 381 23 HOH HOH . D 3 HOH A 24 382 24 HOH HOH . D 3 HOH A 25 383 25 HOH HOH . D 3 HOH A 26 384 26 HOH HOH . D 3 HOH A 27 385 27 HOH HOH . D 3 HOH A 28 386 28 HOH HOH . D 3 HOH A 29 387 29 HOH HOH . D 3 HOH A 30 388 30 HOH HOH . D 3 HOH A 31 389 32 HOH HOH . D 3 HOH A 32 390 33 HOH HOH . D 3 HOH A 33 391 34 HOH HOH . D 3 HOH A 34 392 35 HOH HOH . D 3 HOH A 35 393 36 HOH HOH . D 3 HOH A 36 394 37 HOH HOH . D 3 HOH A 37 395 38 HOH HOH . D 3 HOH A 38 396 39 HOH HOH . D 3 HOH A 39 397 40 HOH HOH . D 3 HOH A 40 398 41 HOH HOH . D 3 HOH A 41 399 42 HOH HOH . D 3 HOH A 42 400 43 HOH HOH . D 3 HOH A 43 401 44 HOH HOH . D 3 HOH A 44 402 45 HOH HOH . D 3 HOH A 45 403 46 HOH HOH . D 3 HOH A 46 404 47 HOH HOH . D 3 HOH A 47 405 48 HOH HOH . D 3 HOH A 48 406 49 HOH HOH . D 3 HOH A 49 407 50 HOH HOH . D 3 HOH A 50 408 51 HOH HOH . D 3 HOH A 51 409 52 HOH HOH . D 3 HOH A 52 410 53 HOH HOH . D 3 HOH A 53 411 54 HOH HOH . D 3 HOH A 54 412 56 HOH HOH . D 3 HOH A 55 413 57 HOH HOH . D 3 HOH A 56 414 58 HOH HOH . D 3 HOH A 57 415 59 HOH HOH . D 3 HOH A 58 416 60 HOH HOH . D 3 HOH A 59 417 61 HOH HOH . D 3 HOH A 60 418 62 HOH HOH . D 3 HOH A 61 419 63 HOH HOH . D 3 HOH A 62 420 64 HOH HOH . D 3 HOH A 63 421 65 HOH HOH . D 3 HOH A 64 422 66 HOH HOH . D 3 HOH A 65 423 67 HOH HOH . D 3 HOH A 66 424 68 HOH HOH . D 3 HOH A 67 425 73 HOH HOH . D 3 HOH A 68 426 74 HOH HOH . D 3 HOH A 69 427 75 HOH HOH . D 3 HOH A 70 428 76 HOH HOH . D 3 HOH A 71 429 77 HOH HOH . D 3 HOH A 72 430 78 HOH HOH . D 3 HOH A 73 431 79 HOH HOH . D 3 HOH A 74 432 80 HOH HOH . D 3 HOH A 75 433 81 HOH HOH . D 3 HOH A 76 434 82 HOH HOH . D 3 HOH A 77 435 83 HOH HOH . D 3 HOH A 78 436 84 HOH HOH . D 3 HOH A 79 437 85 HOH HOH . D 3 HOH A 80 438 86 HOH HOH . D 3 HOH A 81 439 87 HOH HOH . D 3 HOH A 82 440 88 HOH HOH . D 3 HOH A 83 441 89 HOH HOH . D 3 HOH A 84 442 90 HOH HOH . D 3 HOH A 85 443 91 HOH HOH . D 3 HOH A 86 444 92 HOH HOH . D 3 HOH A 87 445 93 HOH HOH . D 3 HOH A 88 446 94 HOH HOH . D 3 HOH A 89 447 95 HOH HOH . D 3 HOH A 90 448 96 HOH HOH . D 3 HOH A 91 449 97 HOH HOH . D 3 HOH A 92 450 98 HOH HOH . D 3 HOH A 93 451 99 HOH HOH . D 3 HOH A 94 452 100 HOH HOH . D 3 HOH A 95 453 101 HOH HOH . D 3 HOH A 96 454 102 HOH HOH . D 3 HOH A 97 455 103 HOH HOH . D 3 HOH A 98 456 104 HOH HOH . D 3 HOH A 99 457 105 HOH HOH . D 3 HOH A 100 458 106 HOH HOH . D 3 HOH A 101 459 107 HOH HOH . D 3 HOH A 102 460 108 HOH HOH . D 3 HOH A 103 461 109 HOH HOH . D 3 HOH A 104 462 110 HOH HOH . D 3 HOH A 105 463 111 HOH HOH . D 3 HOH A 106 464 112 HOH HOH . D 3 HOH A 107 465 113 HOH HOH . D 3 HOH A 108 466 114 HOH HOH . D 3 HOH A 109 467 115 HOH HOH . D 3 HOH A 110 468 116 HOH HOH . D 3 HOH A 111 469 117 HOH HOH . D 3 HOH A 112 470 118 HOH HOH . D 3 HOH A 113 471 119 HOH HOH . D 3 HOH A 114 472 120 HOH HOH . D 3 HOH A 115 473 121 HOH HOH . D 3 HOH A 116 474 122 HOH HOH . D 3 HOH A 117 475 123 HOH HOH . D 3 HOH A 118 476 124 HOH HOH . D 3 HOH A 119 477 125 HOH HOH . D 3 HOH A 120 478 126 HOH HOH . D 3 HOH A 121 479 127 HOH HOH . D 3 HOH A 122 480 128 HOH HOH . D 3 HOH A 123 481 129 HOH HOH . D 3 HOH A 124 482 130 HOH HOH . D 3 HOH A 125 483 131 HOH HOH . D 3 HOH A 126 484 132 HOH HOH . D 3 HOH A 127 485 133 HOH HOH . D 3 HOH A 128 486 134 HOH HOH . D 3 HOH A 129 487 137 HOH HOH . D 3 HOH A 130 488 138 HOH HOH . D 3 HOH A 131 489 139 HOH HOH . D 3 HOH A 132 490 140 HOH HOH . D 3 HOH A 133 491 141 HOH HOH . D 3 HOH A 134 492 142 HOH HOH . D 3 HOH A 135 493 143 HOH HOH . D 3 HOH A 136 494 144 HOH HOH . D 3 HOH A 137 495 145 HOH HOH . D 3 HOH A 138 496 146 HOH HOH . D 3 HOH A 139 497 147 HOH HOH . D 3 HOH A 140 498 148 HOH HOH . D 3 HOH A 141 499 149 HOH HOH . D 3 HOH A 142 500 150 HOH HOH . D 3 HOH A 143 501 151 HOH HOH . D 3 HOH A 144 502 152 HOH HOH . D 3 HOH A 145 503 153 HOH HOH . D 3 HOH A 146 504 154 HOH HOH . D 3 HOH A 147 505 155 HOH HOH . D 3 HOH A 148 506 156 HOH HOH . D 3 HOH A 149 507 157 HOH HOH . D 3 HOH A 150 508 158 HOH HOH . D 3 HOH A 151 509 160 HOH HOH . D 3 HOH A 152 510 161 HOH HOH . D 3 HOH A 153 511 162 HOH HOH . D 3 HOH A 154 512 163 HOH HOH . D 3 HOH A 155 513 164 HOH HOH . D 3 HOH A 156 514 165 HOH HOH . D 3 HOH A 157 515 166 HOH HOH . D 3 HOH A 158 516 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 50.695 _atom_site.Cartn_y 12.746 _atom_site.Cartn_z 10.789 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 357 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #