data_1YIV # _model_server_result.job_id HeIhqBXWJfMoFZ7uyQe7yg _model_server_result.datetime_utc '2024-11-24 08:59:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1YIV # _exptl.entry_id 1YIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YIV _cell.length_a 45.846 _cell.length_b 45.846 _cell.length_c 125.778 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 1YIV _atom_sites.fract_transf_matrix[1][1] 0.021812 _atom_sites.fract_transf_matrix[1][2] 0.012593 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 1001 1 EPE EPE . C 3 LDA A 1 2001 1 LDA LDA . D 4 HOH A 1 2002 1 HOH HOH . D 4 HOH A 2 2003 2 HOH HOH . D 4 HOH A 3 2004 3 HOH HOH . D 4 HOH A 4 2005 4 HOH HOH . D 4 HOH A 5 2006 5 HOH HOH . D 4 HOH A 6 2007 6 HOH HOH . D 4 HOH A 7 2008 7 HOH HOH . D 4 HOH A 8 2009 8 HOH HOH . D 4 HOH A 9 2010 9 HOH HOH . D 4 HOH A 10 2011 10 HOH HOH . D 4 HOH A 11 2012 11 HOH HOH . D 4 HOH A 12 2013 12 HOH HOH . D 4 HOH A 13 2014 13 HOH HOH . D 4 HOH A 14 2015 14 HOH HOH . D 4 HOH A 15 2016 16 HOH HOH . D 4 HOH A 16 2017 17 HOH HOH . D 4 HOH A 17 2018 18 HOH HOH . D 4 HOH A 18 2019 20 HOH HOH . D 4 HOH A 19 2020 21 HOH HOH . D 4 HOH A 20 2021 22 HOH HOH . D 4 HOH A 21 2022 23 HOH HOH . D 4 HOH A 22 2023 24 HOH HOH . D 4 HOH A 23 2024 25 HOH HOH . D 4 HOH A 24 2025 26 HOH HOH . D 4 HOH A 25 2026 27 HOH HOH . D 4 HOH A 26 2027 28 HOH HOH . D 4 HOH A 27 2028 29 HOH HOH . D 4 HOH A 28 2029 30 HOH HOH . D 4 HOH A 29 2030 31 HOH HOH . D 4 HOH A 30 2031 32 HOH HOH . D 4 HOH A 31 2032 33 HOH HOH . D 4 HOH A 32 2033 34 HOH HOH . D 4 HOH A 33 2034 35 HOH HOH . D 4 HOH A 34 2035 36 HOH HOH . D 4 HOH A 35 2036 37 HOH HOH . D 4 HOH A 36 2037 38 HOH HOH . D 4 HOH A 37 2038 39 HOH HOH . D 4 HOH A 38 2039 40 HOH HOH . D 4 HOH A 39 2040 41 HOH HOH . D 4 HOH A 40 2041 43 HOH HOH . D 4 HOH A 41 2042 44 HOH HOH . D 4 HOH A 42 2043 45 HOH HOH . D 4 HOH A 43 2044 46 HOH HOH . D 4 HOH A 44 2045 47 HOH HOH . D 4 HOH A 45 2046 48 HOH HOH . D 4 HOH A 46 2047 49 HOH HOH . D 4 HOH A 47 2048 51 HOH HOH . D 4 HOH A 48 2049 52 HOH HOH . D 4 HOH A 49 2050 53 HOH HOH . D 4 HOH A 50 2051 55 HOH HOH . D 4 HOH A 51 2052 56 HOH HOH . D 4 HOH A 52 2053 57 HOH HOH . D 4 HOH A 53 2054 58 HOH HOH . D 4 HOH A 54 2055 59 HOH HOH . D 4 HOH A 55 2056 61 HOH HOH . D 4 HOH A 56 2057 63 HOH HOH . D 4 HOH A 57 2058 64 HOH HOH . D 4 HOH A 58 2059 65 HOH HOH . D 4 HOH A 59 2060 66 HOH HOH . D 4 HOH A 60 2061 68 HOH HOH . D 4 HOH A 61 2062 69 HOH HOH . D 4 HOH A 62 2063 70 HOH HOH . D 4 HOH A 63 2064 71 HOH HOH . D 4 HOH A 64 2065 72 HOH HOH . D 4 HOH A 65 2066 73 HOH HOH . D 4 HOH A 66 2067 74 HOH HOH . D 4 HOH A 67 2068 75 HOH HOH . D 4 HOH A 68 2069 76 HOH HOH . D 4 HOH A 69 2070 77 HOH HOH . D 4 HOH A 70 2071 78 HOH HOH . D 4 HOH A 71 2072 79 HOH HOH . D 4 HOH A 72 2073 80 HOH HOH . D 4 HOH A 73 2074 81 HOH HOH . D 4 HOH A 74 2075 82 HOH HOH . D 4 HOH A 75 2076 83 HOH HOH . D 4 HOH A 76 2077 84 HOH HOH . D 4 HOH A 77 2078 85 HOH HOH . D 4 HOH A 78 2079 86 HOH HOH . D 4 HOH A 79 2080 87 HOH HOH . D 4 HOH A 80 2081 89 HOH HOH . D 4 HOH A 81 2082 90 HOH HOH . D 4 HOH A 82 2083 91 HOH HOH . D 4 HOH A 83 2084 93 HOH HOH . D 4 HOH A 84 2085 94 HOH HOH . D 4 HOH A 85 2086 95 HOH HOH . D 4 HOH A 86 2087 97 HOH HOH . D 4 HOH A 87 2088 98 HOH HOH . D 4 HOH A 88 2089 99 HOH HOH . D 4 HOH A 89 2090 100 HOH HOH . D 4 HOH A 90 2091 101 HOH HOH . D 4 HOH A 91 2092 103 HOH HOH . D 4 HOH A 92 2093 104 HOH HOH . D 4 HOH A 93 2094 105 HOH HOH . D 4 HOH A 94 2095 106 HOH HOH . D 4 HOH A 95 2096 107 HOH HOH . D 4 HOH A 96 2097 108 HOH HOH . D 4 HOH A 97 2098 109 HOH HOH . D 4 HOH A 98 2099 110 HOH HOH . D 4 HOH A 99 2100 111 HOH HOH . D 4 HOH A 100 2101 112 HOH HOH . D 4 HOH A 101 2102 113 HOH HOH . D 4 HOH A 102 2103 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 -7.198 18.025 14.465 1 85.65 ? N1 EPE 1001 A 1 HETATM 2 C C2 EPE . . . B 2 -7.365 17.988 13.007 1 83.66 ? C2 EPE 1001 A 1 HETATM 3 C C3 EPE . . . B 2 -8.829 18.028 12.611 1 82.68 ? C3 EPE 1001 A 1 HETATM 4 N N4 EPE . . . B 2 -9.607 19.062 13.26 1 82.72 ? N4 EPE 1001 A 1 HETATM 5 C C5 EPE . . . B 2 -9.35 19.186 14.672 1 83.88 ? C5 EPE 1001 A 1 HETATM 6 C C6 EPE . . . B 2 -7.875 19.216 14.967 1 85.33 ? C6 EPE 1001 A 1 HETATM 7 C C7 EPE . . . B 2 -11.003 18.771 13.048 1 83.1 ? C7 EPE 1001 A 1 HETATM 8 C C8 EPE . . . B 2 -11.875 19.776 13.763 1 82.9 ? C8 EPE 1001 A 1 HETATM 9 O O8 EPE . . . B 2 -12.134 19.251 15.032 1 83.52 ? O8 EPE 1001 A 1 HETATM 10 C C9 EPE . . . B 2 -5.796 18.158 14.905 1 90.33 ? C9 EPE 1001 A 1 HETATM 11 C C10 EPE . . . B 2 -4.789 17.266 14.216 1 94.49 ? C10 EPE 1001 A 1 HETATM 12 S S EPE . . . B 2 -4.063 17.854 12.661 1 99.29 ? S EPE 1001 A 1 HETATM 13 O O1S EPE . . . B 2 -4.291 16.832 11.619 1 99.94 ? O1S EPE 1001 A 1 HETATM 14 O O2S EPE . . . B 2 -2.634 18.065 12.91 1 101.03 ? O2S EPE 1001 A 1 HETATM 15 O O3S EPE . . . B 2 -4.596 19.135 12.197 1 99.14 ? O3S EPE 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #