data_1YJ0 # _model_server_result.job_id UucEQoSuJhY7O9CMYlJssA _model_server_result.datetime_utc '2024-10-19 01:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":510}' # _entry.id 1YJ0 # _exptl.entry_id 1YJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YJ0 _cell.length_a 106.593 _cell.length_b 106.593 _cell.length_c 106.593 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YJ0 _symmetry.cell_setting cubic _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -53.2965 53.2965 106.593 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 53.2965 106.593 53.2965 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 94 1_555 K ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A NE2 HIS 97 A HIS 98 1_555 K ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 A NE2 HIS 285 A HIS 286 1_555 J ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 A NE2 HIS 285 A HIS 286 6_456 J ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 A NE2 HIS 285 A HIS 286 12_565 J ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 J ZN ZN . A ZN 401 1_555 L O HOH . A HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc7 J ZN ZN . A ZN 401 1_555 L O HOH . A HOH 661 6_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc8 J ZN ZN . A ZN 401 1_555 L O HOH . A HOH 661 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 1YJ0 _atom_sites.fract_transf_matrix[1][1] 0.009381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 2 SO4 A 1 501 501 SO4 SO4 . D 2 SO4 A 1 502 502 SO4 SO4 . E 2 SO4 A 1 503 503 SO4 SO4 . F 2 SO4 A 1 504 504 SO4 SO4 . G 2 SO4 A 1 505 505 SO4 SO4 . H 2 SO4 A 1 508 508 SO4 SO4 . I 2 SO4 A 1 510 510 SO4 SO4 . J 3 ZN A 1 401 401 ZN ZN . K 3 ZN A 1 402 402 ZN ZN . L 4 HOH A 1 600 600 HOH HOH . L 4 HOH A 2 601 601 HOH HOH . L 4 HOH A 3 602 602 HOH HOH . L 4 HOH A 4 603 603 HOH HOH . L 4 HOH A 5 604 604 HOH HOH . L 4 HOH A 6 605 605 HOH HOH . L 4 HOH A 7 606 606 HOH HOH . L 4 HOH A 8 607 607 HOH HOH . L 4 HOH A 9 608 608 HOH HOH . L 4 HOH A 10 609 609 HOH HOH . L 4 HOH A 11 610 610 HOH HOH . L 4 HOH A 12 611 611 HOH HOH . L 4 HOH A 13 612 612 HOH HOH . L 4 HOH A 14 613 613 HOH HOH . L 4 HOH A 15 614 614 HOH HOH . L 4 HOH A 16 615 615 HOH HOH . L 4 HOH A 17 616 616 HOH HOH . L 4 HOH A 18 617 617 HOH HOH . L 4 HOH A 19 618 618 HOH HOH . L 4 HOH A 20 619 619 HOH HOH . L 4 HOH A 21 620 620 HOH HOH . L 4 HOH A 22 621 621 HOH HOH . L 4 HOH A 23 622 622 HOH HOH . L 4 HOH A 24 623 623 HOH HOH . L 4 HOH A 25 624 624 HOH HOH . L 4 HOH A 26 625 625 HOH HOH . L 4 HOH A 27 626 626 HOH HOH . L 4 HOH A 28 627 627 HOH HOH . L 4 HOH A 29 628 628 HOH HOH . L 4 HOH A 30 629 629 HOH HOH . L 4 HOH A 31 630 630 HOH HOH . L 4 HOH A 32 631 631 HOH HOH . L 4 HOH A 33 632 632 HOH HOH . L 4 HOH A 34 633 633 HOH HOH . L 4 HOH A 35 634 634 HOH HOH . L 4 HOH A 36 635 635 HOH HOH . L 4 HOH A 37 636 636 HOH HOH . L 4 HOH A 38 637 637 HOH HOH . L 4 HOH A 39 638 638 HOH HOH . L 4 HOH A 40 639 639 HOH HOH . L 4 HOH A 41 640 640 HOH HOH . L 4 HOH A 42 641 641 HOH HOH . L 4 HOH A 43 642 642 HOH HOH . L 4 HOH A 44 643 643 HOH HOH . L 4 HOH A 45 644 644 HOH HOH . L 4 HOH A 46 645 645 HOH HOH . L 4 HOH A 47 646 646 HOH HOH . L 4 HOH A 48 647 647 HOH HOH . L 4 HOH A 49 648 648 HOH HOH . L 4 HOH A 50 649 649 HOH HOH . L 4 HOH A 51 650 650 HOH HOH . L 4 HOH A 52 651 651 HOH HOH . L 4 HOH A 53 652 652 HOH HOH . L 4 HOH A 54 653 653 HOH HOH . L 4 HOH A 55 654 654 HOH HOH . L 4 HOH A 56 655 655 HOH HOH . L 4 HOH A 57 656 656 HOH HOH . L 4 HOH A 58 657 657 HOH HOH . L 4 HOH A 59 658 658 HOH HOH . L 4 HOH A 60 659 659 HOH HOH . L 4 HOH A 61 660 660 HOH HOH . L 4 HOH A 62 661 661 HOH HOH . L 4 HOH A 63 662 662 HOH HOH . L 4 HOH A 64 663 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 2 -18.19 47.709 45.988 0.33 75.39 ? S SO4 510 A 1 HETATM 2 O O1 SO4 . . . I 2 -19.079 47.299 44.873 0.33 77.05 ? O1 SO4 510 A 1 HETATM 3 O O2 SO4 . . . I 2 -18.702 47.123 47.251 0.33 77.48 ? O2 SO4 510 A 1 HETATM 4 O O3 SO4 . . . I 2 -16.813 47.241 45.741 0.33 77.22 ? O3 SO4 510 A 1 HETATM 5 O O4 SO4 . . . I 2 -18.178 49.184 46.097 0.33 77.25 ? O4 SO4 510 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 5 #