data_1YJ5
#
_model_server_result.job_id            KfJiBMJ126la3-QuD5PnOg 
_model_server_result.datetime_utc      '2024-11-12 20:34:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yj5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":103}' 
#
_entry.id    1YJ5 
#
_exptl.entry_id    1YJ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YJ5 
_cell.length_a            95.473 
_cell.length_b            169.872 
_cell.length_c            77.016 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YJ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 
C,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 79 A GLN 218 1_555 A N MSE 80 A MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 80 A MSE 219 1_555 A N GLY 81 A GLY 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C GLY 124 A GLY 263 1_555 A N MSE 125 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C MSE 125 A MSE 264 1_555 A N TRP 126 A TRP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLU 325 A GLU 464 1_555 A N MSE 326 A MSE 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C MSE 326 A MSE 465 1_555 A N THR 327 A THR 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C ASP 336 A ASP 475 1_555 A N MSE 337 A MSE 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C MSE 337 A MSE 476 1_555 A N VAL 338 A VAL 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 A C VAL 338 A VAL 477 1_555 A N MSE 339 A MSE 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 A C MSE 339 A MSE 478 1_555 A N PHE 340 A PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 B C GLN 79 B GLN 218 1_555 B N MSE 80 B MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 B C MSE 80 B MSE 219 1_555 B N GLY 81 B GLY 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 B C GLY 124 B GLY 263 1_555 B N MSE 125 B MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 B C MSE 125 B MSE 264 1_555 B N TRP 126 B TRP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 B C GLU 325 B GLU 464 1_555 B N MSE 326 B MSE 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 B C MSE 326 B MSE 465 1_555 B N THR 327 B THR 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale17 B C ASP 336 B ASP 475 1_555 B N MSE 337 B MSE 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale18 B C MSE 337 B MSE 476 1_555 B N VAL 338 B VAL 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale19 B C VAL 338 B VAL 477 1_555 B N MSE 339 B MSE 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale20 B C MSE 339 B MSE 478 1_555 B N PHE 340 B PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 309 n n 
S O2 SO4 doub 310 n n 
S O3 SO4 sing 311 n n 
S O4 SO4 sing 312 n n 
#
_atom_sites.entry_id                     1YJ5 
_atom_sites.fract_transf_matrix[1][1]    0.010474 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SO4 A 1 101 101 SO4 SO4 . 
E 3 SO4 A 1 102 102 SO4 SO4 . 
F 3 SO4 A 1 103 103 SO4 SO4 . 
G 3 SO4 A 1 105 105 SO4 SO4 . 
H 3 SO4 A 1 107 107 SO4 SO4 . 
I 3 SO4 A 1 108 108 SO4 SO4 . 
J 3 SO4 A 1 110 110 SO4 SO4 . 
K 3 SO4 B 1 104 104 SO4 SO4 . 
L 3 SO4 B 1 106 106 SO4 SO4 . 
M 3 SO4 B 1 109 109 SO4 SO4 . 
N 3 SO4 B 1 111 111 SO4 SO4 . 
O 3 SO4 B 1 112 112 SO4 SO4 . 
P 4 HOH A 1 2 2 HOH HOH . 
P 4 HOH A 2 3 3 HOH HOH . 
P 4 HOH A 3 6 6 HOH HOH . 
P 4 HOH A 4 7 7 HOH HOH . 
P 4 HOH A 5 9 9 HOH HOH . 
P 4 HOH A 6 10 10 HOH HOH . 
P 4 HOH A 7 12 12 HOH HOH . 
P 4 HOH A 8 13 13 HOH HOH . 
P 4 HOH A 9 17 17 HOH HOH . 
P 4 HOH A 10 18 18 HOH HOH . 
P 4 HOH A 11 19 19 HOH HOH . 
P 4 HOH A 12 20 20 HOH HOH . 
P 4 HOH A 13 21 21 HOH HOH . 
P 4 HOH A 14 22 22 HOH HOH . 
P 4 HOH A 15 23 23 HOH HOH . 
P 4 HOH A 16 24 24 HOH HOH . 
P 4 HOH A 17 26 26 HOH HOH . 
P 4 HOH A 18 28 28 HOH HOH . 
P 4 HOH A 19 30 30 HOH HOH . 
P 4 HOH A 20 31 31 HOH HOH . 
P 4 HOH A 21 32 32 HOH HOH . 
P 4 HOH A 22 35 35 HOH HOH . 
P 4 HOH A 23 37 37 HOH HOH . 
P 4 HOH A 24 38 38 HOH HOH . 
P 4 HOH A 25 39 39 HOH HOH . 
P 4 HOH A 26 40 40 HOH HOH . 
P 4 HOH A 27 41 41 HOH HOH . 
P 4 HOH A 28 42 42 HOH HOH . 
P 4 HOH A 29 43 43 HOH HOH . 
P 4 HOH A 30 44 44 HOH HOH . 
P 4 HOH A 31 45 45 HOH HOH . 
P 4 HOH A 32 46 46 HOH HOH . 
P 4 HOH A 33 47 47 HOH HOH . 
P 4 HOH A 34 49 49 HOH HOH . 
P 4 HOH A 35 50 50 HOH HOH . 
P 4 HOH A 36 51 51 HOH HOH . 
P 4 HOH A 37 54 54 HOH HOH . 
P 4 HOH A 38 57 57 HOH HOH . 
P 4 HOH A 39 58 58 HOH HOH . 
P 4 HOH A 40 59 59 HOH HOH . 
P 4 HOH A 41 62 62 HOH HOH . 
P 4 HOH A 42 63 63 HOH HOH . 
P 4 HOH A 43 65 65 HOH HOH . 
P 4 HOH A 44 66 66 HOH HOH . 
P 4 HOH A 45 70 70 HOH HOH . 
P 4 HOH A 46 71 71 HOH HOH . 
P 4 HOH A 47 73 73 HOH HOH . 
P 4 HOH A 48 74 74 HOH HOH . 
P 4 HOH A 49 75 75 HOH HOH . 
P 4 HOH A 50 77 77 HOH HOH . 
Q 4 HOH B 1 1 1 HOH HOH . 
Q 4 HOH B 2 4 4 HOH HOH . 
Q 4 HOH B 3 5 5 HOH HOH . 
Q 4 HOH B 4 8 8 HOH HOH . 
Q 4 HOH B 5 11 11 HOH HOH . 
Q 4 HOH B 6 14 14 HOH HOH . 
Q 4 HOH B 7 15 15 HOH HOH . 
Q 4 HOH B 8 16 16 HOH HOH . 
Q 4 HOH B 9 25 25 HOH HOH . 
Q 4 HOH B 10 27 27 HOH HOH . 
Q 4 HOH B 11 29 29 HOH HOH . 
Q 4 HOH B 12 33 33 HOH HOH . 
Q 4 HOH B 13 34 34 HOH HOH . 
Q 4 HOH B 14 36 36 HOH HOH . 
Q 4 HOH B 15 48 48 HOH HOH . 
Q 4 HOH B 16 52 52 HOH HOH . 
Q 4 HOH B 17 53 53 HOH HOH . 
Q 4 HOH B 18 55 55 HOH HOH . 
Q 4 HOH B 19 56 56 HOH HOH . 
Q 4 HOH B 20 60 60 HOH HOH . 
Q 4 HOH B 21 61 61 HOH HOH . 
Q 4 HOH B 22 64 64 HOH HOH . 
Q 4 HOH B 23 67 67 HOH HOH . 
Q 4 HOH B 24 68 68 HOH HOH . 
Q 4 HOH B 25 72 72 HOH HOH . 
Q 4 HOH B 26 76 76 HOH HOH . 
R 4 HOH C 1 144 69 HOH HOH . 
R 4 HOH C 2 145 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . F 3 50.578 30.137 79.045 1 46.69 ? S SO4 103 A 1 
HETATM 2 O O1 SO4 . . . F 3 49.384 30.146 79.878 1 47.13 ? O1 SO4 103 A 1 
HETATM 3 O O2 SO4 . . . F 3 50.264 30.817 77.795 1 47 ? O2 SO4 103 A 1 
HETATM 4 O O3 SO4 . . . F 3 50.957 28.754 78.773 1 47.33 ? O3 SO4 103 A 1 
HETATM 5 O O4 SO4 . . . F 3 51.669 30.82 79.736 1 46.22 ? O4 SO4 103 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           5 
#