data_1YJ6
#
_model_server_result.job_id            6SeNRTeU6ZQgKlXG4GLcAQ 
_model_server_result.datetime_utc      '2024-10-13 20:29:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":218}' 
#
_entry.id    1YJ6 
#
_exptl.entry_id    1YJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.323 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLUTATHIONE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.47 
_cell.angle_gamma         90 
_cell.entry_id            1YJ6 
_cell.length_a            178.64 
_cell.length_b            51.41 
_cell.length_c            93.82 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,J,K 1 1 
C,H,I,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 50.368012 0 -79.153369 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E SG2 GSH . A GSH 218 1_555 D ZN ZN . A ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc2 D ZN ZN . A ZN 219 1_555 J O HOH . A HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc3 D ZN ZN . A ZN 219 1_555 J O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc4 D ZN ZN . A ZN 219 1_555 J O HOH . A HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? 
metalc ? metalc5 G SG2 GSH . B GSH 218 1_555 F ZN ZN . B ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc6 F ZN ZN . B ZN 219 1_555 K O HOH . B HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc7 F ZN ZN . B ZN 219 1_555 K O HOH . B HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc8 F ZN ZN . B ZN 219 1_555 K O HOH . B HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc9 I SG2 GSH . C GSH 218 1_555 H ZN ZN . C ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc10 H ZN ZN . C ZN 219 1_555 L O HOH . C HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc11 H ZN ZN . C ZN 219 1_555 L O HOH . C HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc12 H ZN ZN . C ZN 219 1_555 L O HOH . C HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
#
_chem_comp.formula           'C10 H17 N3 O6 S' 
_chem_comp.formula_weight    307.323 
_chem_comp.id                GSH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLUTATHIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 CA1 GSH sing 129 n n 
N1 HN11 GSH sing 130 n n 
N1 HN12 GSH sing 131 n n 
CA1 C1 GSH sing 132 n n 
CA1 CB1 GSH sing 133 n n 
CA1 HA1 GSH sing 134 n n 
C1 O11 GSH doub 135 n n 
C1 O12 GSH sing 136 n n 
O12 H12 GSH sing 137 n n 
CB1 CG1 GSH sing 138 n n 
CB1 HB12 GSH sing 139 n n 
CB1 HB13 GSH sing 140 n n 
CG1 CD1 GSH sing 141 n n 
CG1 HG12 GSH sing 142 n n 
CG1 HG13 GSH sing 143 n n 
CD1 OE1 GSH doub 144 n n 
CD1 N2 GSH sing 145 n n 
N2 CA2 GSH sing 146 n n 
N2 HN2 GSH sing 147 n n 
CA2 C2 GSH sing 148 n n 
CA2 CB2 GSH sing 149 n n 
CA2 HA2 GSH sing 150 n n 
C2 O2 GSH doub 151 n n 
C2 N3 GSH sing 152 n n 
CB2 SG2 GSH sing 153 n n 
CB2 HB22 GSH sing 154 n n 
CB2 HB23 GSH sing 155 n n 
SG2 HSG GSH sing 156 n n 
N3 CA3 GSH sing 157 n n 
N3 HN3 GSH sing 158 n n 
CA3 C3 GSH sing 159 n n 
CA3 HA31 GSH sing 160 n n 
CA3 HA32 GSH sing 161 n n 
C3 O31 GSH doub 162 n n 
C3 O32 GSH sing 163 n n 
O32 H32 GSH sing 164 n n 
#
_atom_sites.entry_id                     1YJ6 
_atom_sites.fract_transf_matrix[1][1]    0.005598 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003562 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 219 219 ZN ZH3 . 
E 3 GSH A 1 218 218 GSH GSH . 
F 2 ZN B 1 219 219 ZN ZH3 . 
G 3 GSH B 1 218 218 GSH GSH . 
H 2 ZN C 1 219 219 ZN ZH3 . 
I 3 GSH C 1 218 218 GSH GSH . 
J 4 HOH A 1 220 1 HOH HOH . 
J 4 HOH A 2 221 5 HOH HOH . 
J 4 HOH A 3 222 8 HOH HOH . 
J 4 HOH A 4 223 10 HOH HOH . 
J 4 HOH A 5 224 11 HOH HOH . 
J 4 HOH A 6 225 13 HOH HOH . 
J 4 HOH A 7 226 14 HOH HOH . 
J 4 HOH A 8 227 15 HOH HOH . 
J 4 HOH A 9 228 18 HOH HOH . 
J 4 HOH A 10 229 22 HOH HOH . 
J 4 HOH A 11 230 25 HOH HOH . 
J 4 HOH A 12 231 32 HOH HOH . 
J 4 HOH A 13 232 38 HOH HOH . 
J 4 HOH A 14 233 39 HOH HOH . 
J 4 HOH A 15 234 40 HOH HOH . 
J 4 HOH A 16 235 47 HOH HOH . 
J 4 HOH A 17 236 50 HOH HOH . 
J 4 HOH A 18 237 51 HOH HOH . 
J 4 HOH A 19 238 53 HOH HOH . 
J 4 HOH A 20 239 55 HOH HOH . 
J 4 HOH A 21 240 60 HOH HOH . 
J 4 HOH A 22 241 64 HOH HOH . 
J 4 HOH A 23 242 65 HOH HOH . 
J 4 HOH A 24 243 66 HOH HOH . 
J 4 HOH A 25 244 67 HOH HOH . 
J 4 HOH A 26 245 68 HOH HOH . 
J 4 HOH A 27 246 69 HOH HOH . 
J 4 HOH A 28 247 70 HOH HOH . 
J 4 HOH A 29 248 71 HOH HOH . 
J 4 HOH A 30 249 73 HOH HOH . 
J 4 HOH A 31 250 75 HOH HOH . 
J 4 HOH A 32 251 77 HOH HOH . 
J 4 HOH A 33 252 78 HOH HOH . 
J 4 HOH A 34 253 79 HOH HOH . 
J 4 HOH A 35 254 80 HOH HOH . 
J 4 HOH A 36 255 81 HOH HOH . 
J 4 HOH A 37 256 82 HOH HOH . 
J 4 HOH A 38 257 219 HOH ZH3 . 
J 4 HOH A 39 258 219 HOH ZH3 . 
J 4 HOH A 40 259 219 HOH ZH3 . 
K 4 HOH B 1 220 3 HOH HOH . 
K 4 HOH B 2 221 4 HOH HOH . 
K 4 HOH B 3 222 16 HOH HOH . 
K 4 HOH B 4 223 17 HOH HOH . 
K 4 HOH B 5 224 21 HOH HOH . 
K 4 HOH B 6 225 24 HOH HOH . 
K 4 HOH B 7 226 27 HOH HOH . 
K 4 HOH B 8 227 29 HOH HOH . 
K 4 HOH B 9 228 30 HOH HOH . 
K 4 HOH B 10 229 33 HOH HOH . 
K 4 HOH B 11 230 34 HOH HOH . 
K 4 HOH B 12 231 36 HOH HOH . 
K 4 HOH B 13 232 37 HOH HOH . 
K 4 HOH B 14 233 44 HOH HOH . 
K 4 HOH B 15 234 46 HOH HOH . 
K 4 HOH B 16 235 49 HOH HOH . 
K 4 HOH B 17 236 54 HOH HOH . 
K 4 HOH B 18 237 56 HOH HOH . 
K 4 HOH B 19 238 58 HOH HOH . 
K 4 HOH B 20 239 59 HOH HOH . 
K 4 HOH B 21 240 62 HOH HOH . 
K 4 HOH B 22 241 63 HOH HOH . 
K 4 HOH B 23 242 72 HOH HOH . 
K 4 HOH B 24 243 74 HOH HOH . 
K 4 HOH B 25 244 76 HOH HOH . 
K 4 HOH B 26 245 92 HOH HOH . 
K 4 HOH B 27 246 93 HOH HOH . 
K 4 HOH B 28 247 94 HOH HOH . 
K 4 HOH B 29 248 95 HOH HOH . 
K 4 HOH B 30 249 96 HOH HOH . 
K 4 HOH B 31 250 97 HOH HOH . 
K 4 HOH B 32 251 219 HOH ZH3 . 
K 4 HOH B 33 252 219 HOH ZH3 . 
K 4 HOH B 34 253 219 HOH ZH3 . 
L 4 HOH C 1 220 2 HOH HOH . 
L 4 HOH C 2 221 6 HOH HOH . 
L 4 HOH C 3 222 7 HOH HOH . 
L 4 HOH C 4 223 9 HOH HOH . 
L 4 HOH C 5 224 12 HOH HOH . 
L 4 HOH C 6 225 19 HOH HOH . 
L 4 HOH C 7 226 20 HOH HOH . 
L 4 HOH C 8 227 23 HOH HOH . 
L 4 HOH C 9 228 26 HOH HOH . 
L 4 HOH C 10 229 28 HOH HOH . 
L 4 HOH C 11 230 31 HOH HOH . 
L 4 HOH C 12 231 35 HOH HOH . 
L 4 HOH C 13 232 41 HOH HOH . 
L 4 HOH C 14 233 42 HOH HOH . 
L 4 HOH C 15 234 43 HOH HOH . 
L 4 HOH C 16 235 45 HOH HOH . 
L 4 HOH C 17 236 48 HOH HOH . 
L 4 HOH C 18 237 52 HOH HOH . 
L 4 HOH C 19 238 57 HOH HOH . 
L 4 HOH C 20 239 61 HOH HOH . 
L 4 HOH C 21 240 83 HOH HOH . 
L 4 HOH C 22 241 84 HOH HOH . 
L 4 HOH C 23 242 85 HOH HOH . 
L 4 HOH C 24 243 86 HOH HOH . 
L 4 HOH C 25 244 87 HOH HOH . 
L 4 HOH C 26 245 88 HOH HOH . 
L 4 HOH C 27 246 89 HOH HOH . 
L 4 HOH C 28 247 90 HOH HOH . 
L 4 HOH C 29 248 91 HOH HOH . 
L 4 HOH C 30 249 219 HOH ZH3 . 
L 4 HOH C 31 250 219 HOH ZH3 . 
L 4 HOH C 32 251 219 HOH ZH3 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GSH . . . I 3 27.516 25.697 -34.881 1 47.32 ? N1 GSH 218 C 1 
HETATM 2 C CA1 GSH . . . I 3 28.09 25.861 -33.535 1 48.78 ? CA1 GSH 218 C 1 
HETATM 3 C C1 GSH . . . I 3 27.518 24.896 -32.437 1 47.01 ? C1 GSH 218 C 1 
HETATM 4 O O11 GSH . . . I 3 26.341 24.611 -32.382 1 40.14 ? O11 GSH 218 C 1 
HETATM 5 O O12 GSH . . . I 3 28.455 24.465 -31.713 1 53.99 ? O12 GSH 218 C 1 
HETATM 6 C CB1 GSH . . . I 3 28.143 27.344 -33.065 1 43.46 ? CB1 GSH 218 C 1 
HETATM 7 C CG1 GSH . . . I 3 28.637 27.566 -31.651 1 42.76 ? CG1 GSH 218 C 1 
HETATM 8 C CD1 GSH . . . I 3 28.516 28.986 -31.195 1 46.06 ? CD1 GSH 218 C 1 
HETATM 9 O OE1 GSH . . . I 3 28.672 29.989 -31.959 1 46.54 ? OE1 GSH 218 C 1 
HETATM 10 N N2 GSH . . . I 3 28.274 29.063 -29.877 1 47.79 ? N2 GSH 218 C 1 
HETATM 11 C CA2 GSH . . . I 3 28.074 30.304 -29.151 1 50.3 ? CA2 GSH 218 C 1 
HETATM 12 C C2 GSH . . . I 3 29.309 30.952 -28.527 1 50.77 ? C2 GSH 218 C 1 
HETATM 13 O O2 GSH . . . I 3 29.252 32.116 -28.17 1 51.94 ? O2 GSH 218 C 1 
HETATM 14 C CB2 GSH . . . I 3 26.809 30.317 -28.253 1 49.88 ? CB2 GSH 218 C 1 
HETATM 15 S SG2 GSH . . . I 3 25.455 29.814 -29.325 1 52.45 ? SG2 GSH 218 C 1 
HETATM 16 N N3 GSH . . . I 3 30.471 30.214 -28.452 1 46.24 ? N3 GSH 218 C 1 
HETATM 17 C CA3 GSH . . . I 3 31.663 30.826 -27.862 1 46.04 ? CA3 GSH 218 C 1 
HETATM 18 C C3 GSH . . . I 3 33.013 30.608 -28.556 1 48.65 ? C3 GSH 218 C 1 
HETATM 19 O O31 GSH . . . I 3 34.034 30.6 -27.806 1 48.99 ? O31 GSH 218 C 1 
HETATM 20 O O32 GSH . . . I 3 32.971 30.351 -29.801 1 49.86 ? O32 GSH 218 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          29 
_model_server_stats.element_count           20 
#