data_1YJA
#
_model_server_result.job_id            MIeHHo7CJFGLWZZgAnamxA 
_model_server_result.datetime_utc      '2024-12-01 20:18:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":290}' 
#
_entry.id    1YJA 
#
_exptl.entry_id    1YJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.13 
_cell.angle_gamma         90 
_cell.entry_id            1YJA 
_cell.length_a            41.57 
_cell.length_b            79.67 
_cell.length_c            37.22 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 205 A ILE 205 1_555 A N CSO 206 A CSO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C CSO 206 A CSO 206 1_555 A N SER 207 A SER 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
metalc ? metalc1 A OE1 GLN 2 A GLN 2 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc2 A OD1 ASP 41 A ASP 41 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? 
metalc ? metalc4 A O LEU 75 A LEU 75 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc5 A OD1 ASN 77 A ASN 77 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc6 A O ILE 79 A ILE 79 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc7 A O VAL 81 A VAL 81 1_555 B CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc8 A O ALA 169 A ALA 169 1_555 C CA CA . A CA 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc9 A O TYR 171 A TYR 171 1_555 C CA CA . A CA 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc10 A O VAL 174 A VAL 174 1_555 C CA CA . A CA 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc11 C CA CA . A CA 291 1_555 D O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YJA 
_atom_sites.fract_transf_matrix[1][1]    0.024056 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010776 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012552 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02944 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 290 290 CA CA . 
C 2 CA A 1 291 291 CA CA . 
D 3 HOH A 1 301 301 HOH HOH . 
D 3 HOH A 2 302 302 HOH HOH . 
D 3 HOH A 3 303 303 HOH HOH . 
D 3 HOH A 4 304 304 HOH HOH . 
D 3 HOH A 5 305 305 HOH HOH . 
D 3 HOH A 6 306 306 HOH HOH . 
D 3 HOH A 7 307 307 HOH HOH . 
D 3 HOH A 8 308 308 HOH HOH . 
D 3 HOH A 9 309 309 HOH HOH . 
D 3 HOH A 10 310 310 HOH HOH . 
D 3 HOH A 11 311 311 HOH HOH . 
D 3 HOH A 12 312 312 HOH HOH . 
D 3 HOH A 13 313 313 HOH HOH . 
D 3 HOH A 14 314 314 HOH HOH . 
D 3 HOH A 15 315 315 HOH HOH . 
D 3 HOH A 16 316 316 HOH HOH . 
D 3 HOH A 17 317 317 HOH HOH . 
D 3 HOH A 18 318 318 HOH HOH . 
D 3 HOH A 19 319 319 HOH HOH . 
D 3 HOH A 20 320 320 HOH HOH . 
D 3 HOH A 21 321 321 HOH HOH . 
D 3 HOH A 22 322 322 HOH HOH . 
D 3 HOH A 23 323 323 HOH HOH . 
D 3 HOH A 24 324 324 HOH HOH . 
D 3 HOH A 25 325 325 HOH HOH . 
D 3 HOH A 26 326 326 HOH HOH . 
D 3 HOH A 27 327 327 HOH HOH . 
D 3 HOH A 28 328 328 HOH HOH . 
D 3 HOH A 29 329 329 HOH HOH . 
D 3 HOH A 30 330 330 HOH HOH . 
D 3 HOH A 31 331 331 HOH HOH . 
D 3 HOH A 32 332 332 HOH HOH . 
D 3 HOH A 33 333 333 HOH HOH . 
D 3 HOH A 34 334 334 HOH HOH . 
D 3 HOH A 35 335 335 HOH HOH . 
D 3 HOH A 36 336 336 HOH HOH . 
D 3 HOH A 37 337 337 HOH HOH . 
D 3 HOH A 38 338 338 HOH HOH . 
D 3 HOH A 39 339 339 HOH HOH . 
D 3 HOH A 40 340 340 HOH HOH . 
D 3 HOH A 41 341 341 HOH HOH . 
D 3 HOH A 42 342 342 HOH HOH . 
D 3 HOH A 43 343 343 HOH HOH . 
D 3 HOH A 44 344 344 HOH HOH . 
D 3 HOH A 45 345 345 HOH HOH . 
D 3 HOH A 46 346 346 HOH HOH . 
D 3 HOH A 47 347 347 HOH HOH . 
D 3 HOH A 48 348 348 HOH HOH . 
D 3 HOH A 49 349 349 HOH HOH . 
D 3 HOH A 50 350 350 HOH HOH . 
D 3 HOH A 51 351 351 HOH HOH . 
D 3 HOH A 52 352 352 HOH HOH . 
D 3 HOH A 53 353 353 HOH HOH . 
D 3 HOH A 54 354 354 HOH HOH . 
D 3 HOH A 55 355 355 HOH HOH . 
D 3 HOH A 56 356 356 HOH HOH . 
D 3 HOH A 57 357 357 HOH HOH . 
D 3 HOH A 58 358 358 HOH HOH . 
D 3 HOH A 59 359 359 HOH HOH . 
D 3 HOH A 60 360 360 HOH HOH . 
D 3 HOH A 61 361 361 HOH HOH . 
D 3 HOH A 62 362 362 HOH HOH . 
D 3 HOH A 63 363 363 HOH HOH . 
D 3 HOH A 64 364 364 HOH HOH . 
D 3 HOH A 65 365 365 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -5.055 
_atom_site.Cartn_y               56.282 
_atom_site.Cartn_z               26.922 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.4 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           290 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#