data_1YJK # _model_server_result.job_id LMkKfTi4z_MMcjislQsVKg _model_server_result.datetime_utc '2024-10-13 00:19:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":357}' # _entry.id 1YJK # _exptl.entry_id 1YJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YJK _cell.length_a 59.146 _cell.length_b 66.335 _cell.length_c 69.917 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 81 1_555 A SG CYS 77 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 65 A CYS 114 1_555 A SG CYS 82 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf3 A SG CYS 178 A CYS 227 1_555 A SG CYS 285 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 A SG CYS 244 A CYS 293 1_555 A SG CYS 266 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc1 A ND1 HIS 58 A HIS 107 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A ND1 HIS 59 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 A ND1 HIS 123 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 C CU CU . A CU 358 1_555 I O HOH . A HOH 885 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 C CU CU . A CU 358 1_555 A SD MET 265 A MET 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc6 C CU CU . A CU 358 1_555 A NE2 HIS 193 A HIS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc7 C CU CU . A CU 358 1_555 A NE2 HIS 195 A HIS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YJK _atom_sites.fract_transf_matrix[1][1] 0.016907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 357 357 CU CU . C 2 CU A 1 358 358 CU 1CU . D 3 GOL A 1 701 701 GOL GOL . E 3 GOL A 1 702 702 GOL GOL . F 3 GOL A 1 703 703 GOL GOL . G 3 GOL A 1 704 704 GOL GOL . H 3 GOL A 1 801 801 GOL GOL . I 4 HOH A 1 802 1 HOH HOH . I 4 HOH A 2 803 2 HOH HOH . I 4 HOH A 3 804 3 HOH HOH . I 4 HOH A 4 805 4 HOH HOH . I 4 HOH A 5 806 6 HOH HOH . I 4 HOH A 6 807 7 HOH HOH . I 4 HOH A 7 808 8 HOH HOH . I 4 HOH A 8 809 9 HOH HOH . I 4 HOH A 9 810 10 HOH HOH . I 4 HOH A 10 811 11 HOH HOH . I 4 HOH A 11 812 12 HOH HOH . I 4 HOH A 12 813 13 HOH HOH . I 4 HOH A 13 814 14 HOH HOH . I 4 HOH A 14 815 15 HOH HOH . I 4 HOH A 15 816 16 HOH HOH . I 4 HOH A 16 817 17 HOH HOH . I 4 HOH A 17 818 18 HOH HOH . I 4 HOH A 18 819 19 HOH HOH . I 4 HOH A 19 820 20 HOH HOH . I 4 HOH A 20 821 22 HOH HOH . I 4 HOH A 21 822 23 HOH HOH . I 4 HOH A 22 823 24 HOH HOH . I 4 HOH A 23 824 25 HOH HOH . I 4 HOH A 24 825 26 HOH HOH . I 4 HOH A 25 826 27 HOH HOH . I 4 HOH A 26 827 28 HOH HOH . I 4 HOH A 27 828 29 HOH HOH . I 4 HOH A 28 829 30 HOH HOH . I 4 HOH A 29 830 31 HOH HOH . I 4 HOH A 30 831 34 HOH HOH . I 4 HOH A 31 832 35 HOH HOH . I 4 HOH A 32 833 36 HOH HOH . I 4 HOH A 33 834 37 HOH HOH . I 4 HOH A 34 835 38 HOH HOH . I 4 HOH A 35 836 39 HOH HOH . I 4 HOH A 36 837 40 HOH HOH . I 4 HOH A 37 838 41 HOH HOH . I 4 HOH A 38 839 43 HOH HOH . I 4 HOH A 39 840 44 HOH HOH . I 4 HOH A 40 841 45 HOH HOH . I 4 HOH A 41 842 46 HOH HOH . I 4 HOH A 42 843 48 HOH HOH . I 4 HOH A 43 844 49 HOH HOH . I 4 HOH A 44 845 50 HOH HOH . I 4 HOH A 45 846 51 HOH HOH . I 4 HOH A 46 847 52 HOH HOH . I 4 HOH A 47 848 53 HOH HOH . I 4 HOH A 48 849 54 HOH HOH . I 4 HOH A 49 850 55 HOH HOH . I 4 HOH A 50 851 56 HOH HOH . I 4 HOH A 51 852 57 HOH HOH . I 4 HOH A 52 853 58 HOH HOH . I 4 HOH A 53 854 59 HOH HOH . I 4 HOH A 54 855 60 HOH HOH . I 4 HOH A 55 856 61 HOH HOH . I 4 HOH A 56 857 62 HOH HOH . I 4 HOH A 57 858 64 HOH HOH . I 4 HOH A 58 859 65 HOH HOH . I 4 HOH A 59 860 68 HOH HOH . I 4 HOH A 60 861 69 HOH HOH . I 4 HOH A 61 862 70 HOH HOH . I 4 HOH A 62 863 71 HOH HOH . I 4 HOH A 63 864 72 HOH HOH . I 4 HOH A 64 865 73 HOH HOH . I 4 HOH A 65 866 75 HOH HOH . I 4 HOH A 66 867 76 HOH HOH . I 4 HOH A 67 868 77 HOH HOH . I 4 HOH A 68 869 78 HOH HOH . I 4 HOH A 69 870 79 HOH HOH . I 4 HOH A 70 871 81 HOH HOH . I 4 HOH A 71 872 82 HOH HOH . I 4 HOH A 72 873 83 HOH HOH . I 4 HOH A 73 874 85 HOH HOH . I 4 HOH A 74 875 86 HOH HOH . I 4 HOH A 75 876 87 HOH HOH . I 4 HOH A 76 877 88 HOH HOH . I 4 HOH A 77 878 89 HOH HOH . I 4 HOH A 78 879 92 HOH HOH . I 4 HOH A 79 880 95 HOH HOH . I 4 HOH A 80 881 96 HOH HOH . I 4 HOH A 81 882 97 HOH HOH . I 4 HOH A 82 883 98 HOH HOH . I 4 HOH A 83 884 99 HOH HOH . I 4 HOH A 84 885 358 HOH 1CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 21.935 _atom_site.Cartn_y 12.635 _atom_site.Cartn_z 10.557 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 357 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #