data_1YJQ
#
_model_server_result.job_id            dIfshIgfzt-ziE7NT2RXzg 
_model_server_result.datetime_utc      '2024-11-23 21:24:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yjq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    1YJQ 
#
_exptl.entry_id    1YJQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YJQ 
_cell.length_a            60.833 
_cell.length_b            66.138 
_cell.length_c            98.808 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YJQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 243 n n 
C1 H11 MPD sing 244 n n 
C1 H12 MPD sing 245 n n 
C1 H13 MPD sing 246 n n 
C2 O2 MPD sing 247 n n 
C2 CM MPD sing 248 n n 
C2 C3 MPD sing 249 n n 
O2 HO2 MPD sing 250 n n 
CM HM1 MPD sing 251 n n 
CM HM2 MPD sing 252 n n 
CM HM3 MPD sing 253 n n 
C3 C4 MPD sing 254 n n 
C3 H31 MPD sing 255 n n 
C3 H32 MPD sing 256 n n 
C4 O4 MPD sing 257 n n 
C4 C5 MPD sing 258 n n 
C4 H4 MPD sing 259 n n 
O4 HO4 MPD sing 260 n n 
C5 H51 MPD sing 261 n n 
C5 H52 MPD sing 262 n n 
C5 H53 MPD sing 263 n n 
#
_atom_sites.entry_id                     1YJQ 
_atom_sites.fract_transf_matrix[1][1]    0.016438 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01512 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 701 1 ACT ACT . 
C 2 ACT A 1 702 2 ACT ACT . 
D 3 NAP A 1 501 1 NAP NAP . 
E 4 MPD A 1 601 1 MPD MPD . 
F 5 HOH A 1 703 1 HOH HOH . 
F 5 HOH A 2 704 2 HOH HOH . 
F 5 HOH A 3 705 3 HOH HOH . 
F 5 HOH A 4 706 4 HOH HOH . 
F 5 HOH A 5 707 5 HOH HOH . 
F 5 HOH A 6 708 6 HOH HOH . 
F 5 HOH A 7 709 7 HOH HOH . 
F 5 HOH A 8 710 8 HOH HOH . 
F 5 HOH A 9 711 9 HOH HOH . 
F 5 HOH A 10 712 10 HOH HOH . 
F 5 HOH A 11 713 11 HOH HOH . 
F 5 HOH A 12 714 12 HOH HOH . 
F 5 HOH A 13 715 13 HOH HOH . 
F 5 HOH A 14 716 14 HOH HOH . 
F 5 HOH A 15 717 15 HOH HOH . 
F 5 HOH A 16 718 16 HOH HOH . 
F 5 HOH A 17 719 17 HOH HOH . 
F 5 HOH A 18 720 18 HOH HOH . 
F 5 HOH A 19 721 19 HOH HOH . 
F 5 HOH A 20 722 20 HOH HOH . 
F 5 HOH A 21 723 21 HOH HOH . 
F 5 HOH A 22 724 22 HOH HOH . 
F 5 HOH A 23 725 23 HOH HOH . 
F 5 HOH A 24 726 24 HOH HOH . 
F 5 HOH A 25 727 25 HOH HOH . 
F 5 HOH A 26 728 26 HOH HOH . 
F 5 HOH A 27 729 27 HOH HOH . 
F 5 HOH A 28 730 28 HOH HOH . 
F 5 HOH A 29 731 29 HOH HOH . 
F 5 HOH A 30 732 30 HOH HOH . 
F 5 HOH A 31 733 31 HOH HOH . 
F 5 HOH A 32 734 32 HOH HOH . 
F 5 HOH A 33 735 33 HOH HOH . 
F 5 HOH A 34 736 34 HOH HOH . 
F 5 HOH A 35 737 35 HOH HOH . 
F 5 HOH A 36 738 36 HOH HOH . 
F 5 HOH A 37 739 37 HOH HOH . 
F 5 HOH A 38 740 38 HOH HOH . 
F 5 HOH A 39 741 39 HOH HOH . 
F 5 HOH A 40 742 40 HOH HOH . 
F 5 HOH A 41 743 41 HOH HOH . 
F 5 HOH A 42 744 42 HOH HOH . 
F 5 HOH A 43 745 43 HOH HOH . 
F 5 HOH A 44 746 44 HOH HOH . 
F 5 HOH A 45 747 45 HOH HOH . 
F 5 HOH A 46 748 46 HOH HOH . 
F 5 HOH A 47 749 47 HOH HOH . 
F 5 HOH A 48 750 48 HOH HOH . 
F 5 HOH A 49 751 49 HOH HOH . 
F 5 HOH A 50 752 50 HOH HOH . 
F 5 HOH A 51 753 51 HOH HOH . 
F 5 HOH A 52 754 52 HOH HOH . 
F 5 HOH A 53 755 53 HOH HOH . 
F 5 HOH A 54 756 54 HOH HOH . 
F 5 HOH A 55 757 55 HOH HOH . 
F 5 HOH A 56 758 56 HOH HOH . 
F 5 HOH A 57 759 57 HOH HOH . 
F 5 HOH A 58 760 58 HOH HOH . 
F 5 HOH A 59 761 59 HOH HOH . 
F 5 HOH A 60 762 60 HOH HOH . 
F 5 HOH A 61 763 61 HOH HOH . 
F 5 HOH A 62 764 62 HOH HOH . 
F 5 HOH A 63 765 63 HOH HOH . 
F 5 HOH A 64 766 64 HOH HOH . 
F 5 HOH A 65 767 65 HOH HOH . 
F 5 HOH A 66 768 66 HOH HOH . 
F 5 HOH A 67 769 67 HOH HOH . 
F 5 HOH A 68 770 68 HOH HOH . 
F 5 HOH A 69 771 69 HOH HOH . 
F 5 HOH A 70 772 70 HOH HOH . 
F 5 HOH A 71 773 71 HOH HOH . 
F 5 HOH A 72 774 72 HOH HOH . 
F 5 HOH A 73 775 73 HOH HOH . 
F 5 HOH A 74 776 74 HOH HOH . 
F 5 HOH A 75 777 75 HOH HOH . 
F 5 HOH A 76 778 76 HOH HOH . 
F 5 HOH A 77 779 77 HOH HOH . 
F 5 HOH A 78 780 78 HOH HOH . 
F 5 HOH A 79 781 79 HOH HOH . 
F 5 HOH A 80 782 80 HOH HOH . 
F 5 HOH A 81 783 81 HOH HOH . 
F 5 HOH A 82 784 82 HOH HOH . 
F 5 HOH A 83 785 83 HOH HOH . 
F 5 HOH A 84 786 84 HOH HOH . 
F 5 HOH A 85 787 85 HOH HOH . 
F 5 HOH A 86 788 86 HOH HOH . 
F 5 HOH A 87 789 87 HOH HOH . 
F 5 HOH A 88 790 88 HOH HOH . 
F 5 HOH A 89 791 89 HOH HOH . 
F 5 HOH A 90 792 90 HOH HOH . 
F 5 HOH A 91 793 91 HOH HOH . 
F 5 HOH A 92 794 92 HOH HOH . 
F 5 HOH A 93 795 93 HOH HOH . 
F 5 HOH A 94 796 94 HOH HOH . 
F 5 HOH A 95 797 95 HOH HOH . 
F 5 HOH A 96 798 96 HOH HOH . 
F 5 HOH A 97 799 97 HOH HOH . 
F 5 HOH A 98 800 98 HOH HOH . 
F 5 HOH A 99 801 99 HOH HOH . 
F 5 HOH A 100 802 100 HOH HOH . 
F 5 HOH A 101 803 101 HOH HOH . 
F 5 HOH A 102 804 102 HOH HOH . 
F 5 HOH A 103 805 103 HOH HOH . 
F 5 HOH A 104 806 104 HOH HOH . 
F 5 HOH A 105 807 105 HOH HOH . 
F 5 HOH A 106 808 106 HOH HOH . 
F 5 HOH A 107 809 107 HOH HOH . 
F 5 HOH A 108 810 108 HOH HOH . 
F 5 HOH A 109 811 109 HOH HOH . 
F 5 HOH A 110 812 110 HOH HOH . 
F 5 HOH A 111 813 111 HOH HOH . 
F 5 HOH A 112 814 112 HOH HOH . 
F 5 HOH A 113 815 113 HOH HOH . 
F 5 HOH A 114 816 114 HOH HOH . 
F 5 HOH A 115 817 115 HOH HOH . 
F 5 HOH A 116 818 116 HOH HOH . 
F 5 HOH A 117 819 117 HOH HOH . 
F 5 HOH A 118 820 118 HOH HOH . 
F 5 HOH A 119 821 119 HOH HOH . 
F 5 HOH A 120 822 120 HOH HOH . 
F 5 HOH A 121 823 121 HOH HOH . 
F 5 HOH A 122 824 122 HOH HOH . 
F 5 HOH A 123 825 123 HOH HOH . 
F 5 HOH A 124 826 124 HOH HOH . 
F 5 HOH A 125 827 125 HOH HOH . 
F 5 HOH A 126 828 126 HOH HOH . 
F 5 HOH A 127 829 127 HOH HOH . 
F 5 HOH A 128 830 128 HOH HOH . 
F 5 HOH A 129 831 129 HOH HOH . 
F 5 HOH A 130 832 130 HOH HOH . 
F 5 HOH A 131 833 131 HOH HOH . 
F 5 HOH A 132 834 132 HOH HOH . 
F 5 HOH A 133 835 133 HOH HOH . 
F 5 HOH A 134 836 134 HOH HOH . 
F 5 HOH A 135 837 135 HOH HOH . 
F 5 HOH A 136 838 136 HOH HOH . 
F 5 HOH A 137 839 137 HOH HOH . 
F 5 HOH A 138 840 138 HOH HOH . 
F 5 HOH A 139 841 139 HOH HOH . 
F 5 HOH A 140 842 140 HOH HOH . 
F 5 HOH A 141 843 141 HOH HOH . 
F 5 HOH A 142 844 142 HOH HOH . 
F 5 HOH A 143 845 143 HOH HOH . 
F 5 HOH A 144 846 144 HOH HOH . 
F 5 HOH A 145 847 145 HOH HOH . 
F 5 HOH A 146 848 146 HOH HOH . 
F 5 HOH A 147 849 147 HOH HOH . 
F 5 HOH A 148 850 148 HOH HOH . 
F 5 HOH A 149 851 149 HOH HOH . 
F 5 HOH A 150 852 150 HOH HOH . 
F 5 HOH A 151 853 151 HOH HOH . 
F 5 HOH A 152 854 152 HOH HOH . 
F 5 HOH A 153 855 153 HOH HOH . 
F 5 HOH A 154 856 154 HOH HOH . 
F 5 HOH A 155 857 155 HOH HOH . 
F 5 HOH A 156 858 156 HOH HOH . 
F 5 HOH A 157 859 157 HOH HOH . 
F 5 HOH A 158 860 158 HOH HOH . 
F 5 HOH A 159 861 159 HOH HOH . 
F 5 HOH A 160 862 160 HOH HOH . 
F 5 HOH A 161 863 161 HOH HOH . 
F 5 HOH A 162 864 162 HOH HOH . 
F 5 HOH A 163 865 163 HOH HOH . 
F 5 HOH A 164 866 164 HOH HOH . 
F 5 HOH A 165 867 165 HOH HOH . 
F 5 HOH A 166 868 166 HOH HOH . 
F 5 HOH A 167 869 167 HOH HOH . 
F 5 HOH A 168 870 168 HOH HOH . 
F 5 HOH A 169 871 169 HOH HOH . 
F 5 HOH A 170 872 170 HOH HOH . 
F 5 HOH A 171 873 171 HOH HOH . 
F 5 HOH A 172 874 172 HOH HOH . 
F 5 HOH A 173 875 173 HOH HOH . 
F 5 HOH A 174 876 174 HOH HOH . 
F 5 HOH A 175 877 175 HOH HOH . 
F 5 HOH A 176 878 176 HOH HOH . 
F 5 HOH A 177 879 177 HOH HOH . 
F 5 HOH A 178 880 178 HOH HOH . 
F 5 HOH A 179 881 179 HOH HOH . 
F 5 HOH A 180 882 180 HOH HOH . 
F 5 HOH A 181 883 181 HOH HOH . 
F 5 HOH A 182 884 182 HOH HOH . 
F 5 HOH A 183 885 183 HOH HOH . 
F 5 HOH A 184 886 184 HOH HOH . 
F 5 HOH A 185 887 185 HOH HOH . 
F 5 HOH A 186 888 186 HOH HOH . 
F 5 HOH A 187 889 187 HOH HOH . 
F 5 HOH A 188 890 188 HOH HOH . 
F 5 HOH A 189 891 189 HOH HOH . 
F 5 HOH A 190 892 190 HOH HOH . 
F 5 HOH A 191 893 191 HOH HOH . 
F 5 HOH A 192 894 192 HOH HOH . 
F 5 HOH A 193 895 193 HOH HOH . 
F 5 HOH A 194 896 194 HOH HOH . 
F 5 HOH A 195 897 195 HOH HOH . 
F 5 HOH A 196 898 196 HOH HOH . 
F 5 HOH A 197 899 197 HOH HOH . 
F 5 HOH A 198 900 198 HOH HOH . 
F 5 HOH A 199 901 199 HOH HOH . 
F 5 HOH A 200 902 200 HOH HOH . 
F 5 HOH A 201 903 201 HOH HOH . 
F 5 HOH A 202 904 202 HOH HOH . 
F 5 HOH A 203 905 203 HOH HOH . 
F 5 HOH A 204 906 204 HOH HOH . 
F 5 HOH A 205 907 205 HOH HOH . 
F 5 HOH A 206 908 206 HOH HOH . 
F 5 HOH A 207 909 207 HOH HOH . 
F 5 HOH A 208 910 208 HOH HOH . 
F 5 HOH A 209 911 209 HOH HOH . 
F 5 HOH A 210 912 210 HOH HOH . 
F 5 HOH A 211 913 211 HOH HOH . 
F 5 HOH A 212 914 212 HOH HOH . 
F 5 HOH A 213 915 213 HOH HOH . 
F 5 HOH A 214 916 214 HOH HOH . 
F 5 HOH A 215 917 215 HOH HOH . 
F 5 HOH A 216 918 216 HOH HOH . 
F 5 HOH A 217 919 217 HOH HOH . 
F 5 HOH A 218 920 218 HOH HOH . 
F 5 HOH A 219 921 219 HOH HOH . 
F 5 HOH A 220 922 220 HOH HOH . 
F 5 HOH A 221 923 221 HOH HOH . 
F 5 HOH A 222 924 222 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 4 16.309 -2.353 -15.914 1 26.54 ? C1 MPD 601 A 1 
HETATM 2 C C2 MPD . . . E 4 15.572 -3.077 -14.785 1 27.52 ? C2 MPD 601 A 1 
HETATM 3 O O2 MPD . . . E 4 14.876 -2.072 -13.972 1 26.43 ? O2 MPD 601 A 1 
HETATM 4 C CM MPD . . . E 4 14.418 -3.921 -15.327 1 27.45 ? CM MPD 601 A 1 
HETATM 5 C C3 MPD . . . E 4 16.417 -3.957 -13.864 1 31.37 ? C3 MPD 601 A 1 
HETATM 6 C C4 MPD . . . E 4 17.943 -3.99 -13.758 1 33.64 ? C4 MPD 601 A 1 
HETATM 7 O O4 MPD . . . E 4 18.677 -2.978 -14.352 1 33.75 ? O4 MPD 601 A 1 
HETATM 8 C C5 MPD . . . E 4 18.39 -4.121 -12.298 1 35.73 ? C5 MPD 601 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#