data_1YK4 # _model_server_result.job_id ZW8-4-yp0_K4ByEtkThYMg _model_server_result.datetime_utc '2024-12-26 15:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":54}' # _entry.id 1YK4 # _exptl.entry_id 1YK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YK4 _cell.length_a 25.14 _cell.length_b 39.5 _cell.length_c 45.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 5 A CYS 6 1_555 B FE FE . A FE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A SG CYS 8 A CYS 9 1_555 B FE FE . A FE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 A SG CYS 38 A CYS 39 1_555 B FE FE . A FE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 A SG CYS 41 A CYS 42 1_555 B FE FE . A FE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YK4 _atom_sites.fract_transf_matrix[1][1] 0.039771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 54 54 FE FE . C 3 HOH A 1 55 55 HOH HOH . C 3 HOH A 2 56 56 HOH HOH . C 3 HOH A 3 57 57 HOH HOH . C 3 HOH A 4 58 58 HOH HOH . C 3 HOH A 5 59 59 HOH HOH . C 3 HOH A 6 60 60 HOH HOH . C 3 HOH A 7 61 61 HOH HOH . C 3 HOH A 8 62 62 HOH HOH . C 3 HOH A 9 63 63 HOH HOH . C 3 HOH A 10 64 64 HOH HOH . C 3 HOH A 11 65 65 HOH HOH . C 3 HOH A 12 66 66 HOH HOH . C 3 HOH A 13 67 67 HOH HOH . C 3 HOH A 14 68 68 HOH HOH . C 3 HOH A 15 69 69 HOH HOH . C 3 HOH A 16 70 70 HOH HOH . C 3 HOH A 17 71 71 HOH HOH . C 3 HOH A 18 72 72 HOH HOH . C 3 HOH A 19 73 73 HOH HOH . C 3 HOH A 20 74 74 HOH HOH . C 3 HOH A 21 75 75 HOH HOH . C 3 HOH A 22 76 76 HOH HOH . C 3 HOH A 23 77 77 HOH HOH . C 3 HOH A 24 78 78 HOH HOH . C 3 HOH A 25 79 79 HOH HOH . C 3 HOH A 26 80 80 HOH HOH . C 3 HOH A 27 81 81 HOH HOH . C 3 HOH A 28 82 82 HOH HOH . C 3 HOH A 29 83 83 HOH HOH . C 3 HOH A 30 84 84 HOH HOH . C 3 HOH A 31 85 85 HOH HOH . C 3 HOH A 32 86 86 HOH HOH . C 3 HOH A 33 87 87 HOH HOH . C 3 HOH A 34 88 88 HOH HOH . C 3 HOH A 35 89 89 HOH HOH . C 3 HOH A 36 90 90 HOH HOH . C 3 HOH A 37 91 91 HOH HOH . C 3 HOH A 38 92 92 HOH HOH . C 3 HOH A 39 93 93 HOH HOH . C 3 HOH A 40 94 94 HOH HOH . C 3 HOH A 41 95 95 HOH HOH . C 3 HOH A 42 96 96 HOH HOH . C 3 HOH A 43 97 97 HOH HOH . C 3 HOH A 44 98 98 HOH HOH . C 3 HOH A 45 99 99 HOH HOH . C 3 HOH A 46 100 100 HOH HOH . C 3 HOH A 47 101 101 HOH HOH . C 3 HOH A 48 102 102 HOH HOH . C 3 HOH A 49 103 103 HOH HOH . C 3 HOH A 50 104 104 HOH HOH . C 3 HOH A 51 105 105 HOH HOH . C 3 HOH A 52 106 106 HOH HOH . C 3 HOH A 53 107 107 HOH HOH . C 3 HOH A 54 108 108 HOH HOH . C 3 HOH A 55 109 109 HOH HOH . C 3 HOH A 56 110 110 HOH HOH . C 3 HOH A 57 111 111 HOH HOH . C 3 HOH A 58 112 112 HOH HOH . C 3 HOH A 59 113 113 HOH HOH . C 3 HOH A 60 114 114 HOH HOH . C 3 HOH A 61 115 115 HOH HOH . C 3 HOH A 62 116 116 HOH HOH . C 3 HOH A 63 117 117 HOH HOH . C 3 HOH A 64 118 118 HOH HOH . C 3 HOH A 65 119 119 HOH HOH . C 3 HOH A 66 120 120 HOH HOH . C 3 HOH A 67 121 121 HOH HOH . C 3 HOH A 68 122 122 HOH HOH . C 3 HOH A 69 123 123 HOH HOH . C 3 HOH A 70 124 124 HOH HOH . C 3 HOH A 71 125 125 HOH HOH . C 3 HOH A 72 126 126 HOH HOH . C 3 HOH A 73 127 127 HOH HOH . C 3 HOH A 74 128 128 HOH HOH . C 3 HOH A 75 129 129 HOH HOH . C 3 HOH A 76 130 130 HOH HOH . C 3 HOH A 77 131 131 HOH HOH . C 3 HOH A 78 132 132 HOH HOH . C 3 HOH A 79 133 133 HOH HOH . C 3 HOH A 80 134 134 HOH HOH . C 3 HOH A 81 135 135 HOH HOH . C 3 HOH A 82 136 136 HOH HOH . C 3 HOH A 83 137 137 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.6 _atom_site.Cartn_y 11.521 _atom_site.Cartn_z 0.062 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 54 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #