data_1YK8 # _model_server_result.job_id UA2T2uQM_VZk7VAxVeNkCQ _model_server_result.datetime_utc '2024-11-16 06:57:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 1YK8 # _exptl.entry_id 1YK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TERT-BUTYL 2-CYANO-2-METHYLHYDRAZINECARBOXYLATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YK8 _cell.length_a 56.383 _cell.length_b 56.383 _cell.length_c 128.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 136 1_555 A SG CYS 63 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 56 A CYS 170 1_555 A SG CYS 96 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 A SG CYS 155 A CYS 269 1_555 A SG CYS 204 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B C11 T2M . A T2M 101 1_555 A SG CYS 25 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? # _chem_comp.formula 'C7 H13 N3 O2' _chem_comp.formula_weight 171.197 _chem_comp.id T2M _chem_comp.mon_nstd_flag . _chem_comp.name 'TERT-BUTYL 2-CYANO-2-METHYLHYDRAZINECARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 T2M sing 290 n n C1 H11 T2M sing 291 n n C1 H12 T2M sing 292 n n C1 H13 T2M sing 293 n n N2 N3 T2M sing 294 n n N2 C11 T2M sing 295 n n N3 C4 T2M sing 296 n n N3 HN3 T2M sing 297 n n C4 O5 T2M doub 298 n n C4 O6 T2M sing 299 n n O6 C7 T2M sing 300 n n C7 C8 T2M sing 301 n n C7 C9 T2M sing 302 n n C7 C10 T2M sing 303 n n C8 H81 T2M sing 304 n n C8 H82 T2M sing 305 n n C8 H83 T2M sing 306 n n C9 H91 T2M sing 307 n n C9 H92 T2M sing 308 n n C9 H93 T2M sing 309 n n C10 H101 T2M sing 310 n n C10 H102 T2M sing 311 n n C10 H103 T2M sing 312 n n C11 N12 T2M trip 313 n n # _atom_sites.entry_id 1YK8 _atom_sites.fract_transf_matrix[1][1] 0.017736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T2M A 1 101 1 T2M LIG . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T2M . . . B 2 71.977 -12.669 131.026 1 7.49 ? C1 T2M 101 A 1 HETATM 2 N N2 T2M . . . B 2 72.354 -12.04 132.299 1 15.09 ? N2 T2M 101 A 1 HETATM 3 N N3 T2M . . . B 2 71.581 -10.887 132.49 1 14.58 ? N3 T2M 101 A 1 HETATM 4 C C4 T2M . . . B 2 70.747 -10.804 133.518 1 15.45 ? C4 T2M 101 A 1 HETATM 5 O O5 T2M . . . B 2 70.594 -11.793 134.261 1 12.6 ? O5 T2M 101 A 1 HETATM 6 O O6 T2M . . . B 2 70.077 -9.612 133.725 1 16.04 ? O6 T2M 101 A 1 HETATM 7 C C7 T2M . . . B 2 69.14 -9.603 134.784 1 12.45 ? C7 T2M 101 A 1 HETATM 8 C C8 T2M . . . B 2 68.099 -10.718 134.611 1 10.14 ? C8 T2M 101 A 1 HETATM 9 C C9 T2M . . . B 2 68.407 -8.25 134.757 1 11.76 ? C9 T2M 101 A 1 HETATM 10 C C10 T2M . . . B 2 69.885 -9.752 136.126 1 14.12 ? C10 T2M 101 A 1 HETATM 11 C C11 T2M . . . B 2 73.766 -11.679 132.3 1 13.54 ? C11 T2M 101 A 1 HETATM 12 N N12 T2M . . . B 2 74.578 -12.141 131.303 1 15.54 ? N12 T2M 101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #