data_1YLF # _model_server_result.job_id sm6fBbm0n96PLFaDcQLIAg _model_server_result.datetime_utc '2024-10-25 20:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ylf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":204}' # _entry.id 1YLF # _exptl.entry_id 1YLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YLF _cell.length_a 73.08 _cell.length_b 73.08 _cell.length_c 157.68 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PQS monomeric 1 software_defined_assembly 3 PQS monomeric 1 software_defined_assembly 4 PQS monomeric 1 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 A,D,I 3 1 B,E,F,G,J 4 1 C,H,K 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 35 A TYR 32 1_555 A N MSE 36 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 36 A MSE 33 1_555 A N ALA 37 A ALA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C ILE 50 A ILE 47 1_555 A N MSE 51 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 51 A MSE 48 1_555 A N SER 52 A SER 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale5 A C ALA 126 A ALA 123 1_555 A N MSE 127 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 127 A MSE 124 1_555 A N GLU 128 A GLU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C THR 135 A THR 132 1_555 A N MSE 136 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 A C MSE 136 A MSE 133 1_555 A N GLY 137 A GLY 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C TYR 35 B TYR 32 1_555 B N MSE 36 B MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 36 B MSE 33 1_555 B N ALA 37 B ALA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C ILE 50 B ILE 47 1_555 B N MSE 51 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale12 B C MSE 51 B MSE 48 1_555 B N SER 52 B SER 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C ALA 126 B ALA 123 1_555 B N MSE 127 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 B C MSE 127 B MSE 124 1_555 B N GLU 128 B GLU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 B C THR 135 B THR 132 1_555 B N MSE 136 B MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C MSE 136 B MSE 133 1_555 B N GLY 137 B GLY 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 C C TYR 35 C TYR 32 1_555 C N MSE 36 C MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 C C MSE 36 C MSE 33 1_555 C N ALA 37 C ALA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 C C ILE 50 C ILE 47 1_555 C N MSE 51 C MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 C C MSE 51 C MSE 48 1_555 C N SER 52 C SER 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale21 C C ALA 126 C ALA 123 1_555 C N MSE 127 C MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale22 C C MSE 127 C MSE 124 1_555 C N GLU 128 C GLU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale23 C C THR 135 C THR 132 1_555 C N MSE 136 C MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 C C MSE 136 C MSE 133 1_555 C N GLY 137 C GLY 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YLF _atom_sites.fract_transf_matrix[1][1] 0.0137 _atom_sites.fract_transf_matrix[1][2] 0.0079 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 204 204 CL CL . E 2 CL B 1 201 201 CL CL . F 2 CL B 1 202 202 CL CL . G 2 CL B 1 205 205 CL CL . H 2 CL C 1 203 203 CL CL . I 3 HOH A 1 205 3 HOH HOH . I 3 HOH A 2 206 5 HOH HOH . I 3 HOH A 3 207 7 HOH HOH . I 3 HOH A 4 208 9 HOH HOH . I 3 HOH A 5 209 11 HOH HOH . I 3 HOH A 6 210 12 HOH HOH . I 3 HOH A 7 211 16 HOH HOH . I 3 HOH A 8 212 22 HOH HOH . I 3 HOH A 9 213 24 HOH HOH . I 3 HOH A 10 214 25 HOH HOH . I 3 HOH A 11 215 27 HOH HOH . I 3 HOH A 12 216 32 HOH HOH . I 3 HOH A 13 217 33 HOH HOH . I 3 HOH A 14 218 35 HOH HOH . I 3 HOH A 15 219 37 HOH HOH . I 3 HOH A 16 220 38 HOH HOH . I 3 HOH A 17 221 39 HOH HOH . I 3 HOH A 18 222 40 HOH HOH . J 3 HOH B 1 206 1 HOH HOH . J 3 HOH B 2 207 2 HOH HOH . J 3 HOH B 3 208 8 HOH HOH . J 3 HOH B 4 209 13 HOH HOH . J 3 HOH B 5 210 17 HOH HOH . J 3 HOH B 6 211 20 HOH HOH . J 3 HOH B 7 212 23 HOH HOH . J 3 HOH B 8 213 28 HOH HOH . J 3 HOH B 9 214 30 HOH HOH . J 3 HOH B 10 215 31 HOH HOH . J 3 HOH B 11 216 42 HOH HOH . K 3 HOH C 1 204 6 HOH HOH . K 3 HOH C 2 205 10 HOH HOH . K 3 HOH C 3 206 19 HOH HOH . K 3 HOH C 4 207 21 HOH HOH . K 3 HOH C 5 208 29 HOH HOH . K 3 HOH C 6 209 34 HOH HOH . K 3 HOH C 7 210 41 HOH HOH . K 3 HOH C 8 211 44 HOH HOH . K 3 HOH C 9 212 45 HOH HOH . K 3 HOH C 10 213 46 HOH HOH . K 3 HOH C 11 214 47 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 34.756 _atom_site.Cartn_y 3.128 _atom_site.Cartn_z 7.872 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #