data_1YLH
#
_model_server_result.job_id            P1Mqxzf9Qwz8diW4cNpHDA 
_model_server_result.datetime_utc      '2024-10-16 10:33:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ylh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":594}' 
#
_entry.id    1YLH 
#
_exptl.entry_id    1YLH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.17 
_cell.angle_gamma         90 
_cell.entry_id            1YLH 
_cell.length_a            56.737 
_cell.length_b            55.089 
_cell.length_c            90.077 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YLH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 95 A CYS 74 1_555 F S2 BME . A BME 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale2 A SG CYS 195 A CYS 175 1_555 E S1 DT3 . A DT3 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale3 A SG CYS 305 A CYS 285 1_555 G S2 BME . A BME 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc1 A NZ LYS 233 A LYS 213 1_555 B MN MN . A MN 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc2 A NE2 HIS 252 A HIS 232 1_555 B MN MN . A MN 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 A OD1 ASP 289 A ASP 269 1_555 B MN MN . A MN 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc4 A OD2 ASP 289 A ASP 269 1_555 B MN MN . A MN 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc5 B MN MN . A MN 560 1_555 L O HOH . A HOH 753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc6 B MN MN . A MN 560 1_555 L O HOH . A HOH 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc7 B MN MN . A MN 560 1_555 L O HOH . A HOH 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     1YLH 
_atom_sites.fract_transf_matrix[1][1]    0.017625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005111 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 560 560 MN MN . 
C 3 PO4 A 1 921 921 PO4 PO4 . 
D 3 PO4 A 1 922 922 PO4 PO4 . 
E 4 DT3 A 1 592 592 DT3 DT3 . 
F 5 BME A 1 593 593 BME BME . 
G 5 BME A 1 594 594 BME BME . 
H 6 PYR A 1 931 931 PYR PYR . 
I 7 FMT A 1 900 900 FMT FMT . 
J 7 FMT A 1 901 901 FMT FMT . 
K 7 FMT A 1 902 902 FMT FMT . 
L 8 HOH A 1 601 601 HOH HOH . 
L 8 HOH A 2 602 602 HOH HOH . 
L 8 HOH A 3 603 603 HOH HOH . 
L 8 HOH A 4 604 604 HOH HOH . 
L 8 HOH A 5 605 605 HOH HOH . 
L 8 HOH A 6 606 606 HOH HOH . 
L 8 HOH A 7 607 607 HOH HOH . 
L 8 HOH A 8 608 608 HOH HOH . 
L 8 HOH A 9 609 609 HOH HOH . 
L 8 HOH A 10 611 611 HOH HOH . 
L 8 HOH A 11 612 612 HOH HOH . 
L 8 HOH A 12 613 613 HOH HOH . 
L 8 HOH A 13 614 614 HOH HOH . 
L 8 HOH A 14 615 615 HOH HOH . 
L 8 HOH A 15 616 616 HOH HOH . 
L 8 HOH A 16 617 617 HOH HOH . 
L 8 HOH A 17 618 618 HOH HOH . 
L 8 HOH A 18 619 619 HOH HOH . 
L 8 HOH A 19 620 620 HOH HOH . 
L 8 HOH A 20 621 621 HOH HOH . 
L 8 HOH A 21 622 622 HOH HOH . 
L 8 HOH A 22 623 623 HOH HOH . 
L 8 HOH A 23 626 626 HOH HOH . 
L 8 HOH A 24 627 627 HOH HOH . 
L 8 HOH A 25 628 628 HOH HOH . 
L 8 HOH A 26 629 629 HOH HOH . 
L 8 HOH A 27 630 630 HOH HOH . 
L 8 HOH A 28 632 632 HOH HOH . 
L 8 HOH A 29 633 633 HOH HOH . 
L 8 HOH A 30 634 634 HOH HOH . 
L 8 HOH A 31 635 635 HOH HOH . 
L 8 HOH A 32 636 636 HOH HOH . 
L 8 HOH A 33 637 637 HOH HOH . 
L 8 HOH A 34 638 638 HOH HOH . 
L 8 HOH A 35 639 639 HOH HOH . 
L 8 HOH A 36 640 640 HOH HOH . 
L 8 HOH A 37 641 641 HOH HOH . 
L 8 HOH A 38 642 642 HOH HOH . 
L 8 HOH A 39 643 643 HOH HOH . 
L 8 HOH A 40 644 644 HOH HOH . 
L 8 HOH A 41 645 645 HOH HOH . 
L 8 HOH A 42 646 646 HOH HOH . 
L 8 HOH A 43 647 647 HOH HOH . 
L 8 HOH A 44 648 648 HOH HOH . 
L 8 HOH A 45 649 649 HOH HOH . 
L 8 HOH A 46 650 650 HOH HOH . 
L 8 HOH A 47 651 651 HOH HOH . 
L 8 HOH A 48 652 652 HOH HOH . 
L 8 HOH A 49 653 653 HOH HOH . 
L 8 HOH A 50 654 654 HOH HOH . 
L 8 HOH A 51 656 656 HOH HOH . 
L 8 HOH A 52 657 657 HOH HOH . 
L 8 HOH A 53 658 658 HOH HOH . 
L 8 HOH A 54 659 659 HOH HOH . 
L 8 HOH A 55 660 660 HOH HOH . 
L 8 HOH A 56 661 661 HOH HOH . 
L 8 HOH A 57 662 662 HOH HOH . 
L 8 HOH A 58 663 663 HOH HOH . 
L 8 HOH A 59 664 664 HOH HOH . 
L 8 HOH A 60 665 665 HOH HOH . 
L 8 HOH A 61 666 666 HOH HOH . 
L 8 HOH A 62 667 667 HOH HOH . 
L 8 HOH A 63 668 668 HOH HOH . 
L 8 HOH A 64 669 669 HOH HOH . 
L 8 HOH A 65 671 671 HOH HOH . 
L 8 HOH A 66 672 672 HOH HOH . 
L 8 HOH A 67 673 673 HOH HOH . 
L 8 HOH A 68 674 674 HOH HOH . 
L 8 HOH A 69 675 675 HOH HOH . 
L 8 HOH A 70 676 676 HOH HOH . 
L 8 HOH A 71 677 677 HOH HOH . 
L 8 HOH A 72 678 678 HOH HOH . 
L 8 HOH A 73 680 680 HOH HOH . 
L 8 HOH A 74 681 681 HOH HOH . 
L 8 HOH A 75 682 682 HOH HOH . 
L 8 HOH A 76 683 683 HOH HOH . 
L 8 HOH A 77 684 684 HOH HOH . 
L 8 HOH A 78 685 685 HOH HOH . 
L 8 HOH A 79 686 686 HOH HOH . 
L 8 HOH A 80 687 687 HOH HOH . 
L 8 HOH A 81 688 688 HOH HOH . 
L 8 HOH A 82 689 689 HOH HOH . 
L 8 HOH A 83 690 690 HOH HOH . 
L 8 HOH A 84 691 691 HOH HOH . 
L 8 HOH A 85 692 692 HOH HOH . 
L 8 HOH A 86 693 693 HOH HOH . 
L 8 HOH A 87 694 694 HOH HOH . 
L 8 HOH A 88 695 695 HOH HOH . 
L 8 HOH A 89 696 696 HOH HOH . 
L 8 HOH A 90 697 697 HOH HOH . 
L 8 HOH A 91 698 698 HOH HOH . 
L 8 HOH A 92 699 699 HOH HOH . 
L 8 HOH A 93 701 701 HOH HOH . 
L 8 HOH A 94 702 702 HOH HOH . 
L 8 HOH A 95 703 703 HOH HOH . 
L 8 HOH A 96 704 704 HOH HOH . 
L 8 HOH A 97 706 706 HOH HOH . 
L 8 HOH A 98 707 707 HOH HOH . 
L 8 HOH A 99 709 709 HOH HOH . 
L 8 HOH A 100 710 710 HOH HOH . 
L 8 HOH A 101 712 712 HOH HOH . 
L 8 HOH A 102 713 713 HOH HOH . 
L 8 HOH A 103 714 714 HOH HOH . 
L 8 HOH A 104 716 716 HOH HOH . 
L 8 HOH A 105 717 717 HOH HOH . 
L 8 HOH A 106 718 718 HOH HOH . 
L 8 HOH A 107 719 719 HOH HOH . 
L 8 HOH A 108 720 720 HOH HOH . 
L 8 HOH A 109 721 721 HOH HOH . 
L 8 HOH A 110 722 722 HOH HOH . 
L 8 HOH A 111 723 723 HOH HOH . 
L 8 HOH A 112 725 725 HOH HOH . 
L 8 HOH A 113 726 726 HOH HOH . 
L 8 HOH A 114 727 727 HOH HOH . 
L 8 HOH A 115 728 728 HOH HOH . 
L 8 HOH A 116 730 730 HOH HOH . 
L 8 HOH A 117 731 731 HOH HOH . 
L 8 HOH A 118 732 732 HOH HOH . 
L 8 HOH A 119 733 733 HOH HOH . 
L 8 HOH A 120 735 735 HOH HOH . 
L 8 HOH A 121 736 736 HOH HOH . 
L 8 HOH A 122 737 737 HOH HOH . 
L 8 HOH A 123 738 738 HOH HOH . 
L 8 HOH A 124 739 739 HOH HOH . 
L 8 HOH A 125 740 740 HOH HOH . 
L 8 HOH A 126 741 741 HOH HOH . 
L 8 HOH A 127 742 742 HOH HOH . 
L 8 HOH A 128 745 745 HOH HOH . 
L 8 HOH A 129 747 747 HOH HOH . 
L 8 HOH A 130 751 751 HOH HOH . 
L 8 HOH A 131 752 752 HOH HOH . 
L 8 HOH A 132 753 753 HOH HOH . 
L 8 HOH A 133 754 754 HOH HOH . 
L 8 HOH A 134 755 755 HOH HOH . 
L 8 HOH A 135 757 757 HOH HOH . 
L 8 HOH A 136 758 758 HOH HOH . 
L 8 HOH A 137 759 759 HOH HOH . 
L 8 HOH A 138 762 762 HOH HOH . 
L 8 HOH A 139 763 763 HOH HOH . 
L 8 HOH A 140 764 764 HOH HOH . 
L 8 HOH A 141 765 765 HOH HOH . 
L 8 HOH A 142 767 767 HOH HOH . 
L 8 HOH A 143 769 769 HOH HOH . 
L 8 HOH A 144 771 771 HOH HOH . 
L 8 HOH A 145 773 773 HOH HOH . 
L 8 HOH A 146 775 775 HOH HOH . 
L 8 HOH A 147 777 777 HOH HOH . 
L 8 HOH A 148 778 778 HOH HOH . 
L 8 HOH A 149 779 779 HOH HOH . 
L 8 HOH A 150 780 780 HOH HOH . 
L 8 HOH A 151 781 781 HOH HOH . 
L 8 HOH A 152 782 782 HOH HOH . 
L 8 HOH A 153 785 785 HOH HOH . 
L 8 HOH A 154 787 787 HOH HOH . 
L 8 HOH A 155 788 788 HOH HOH . 
L 8 HOH A 156 789 789 HOH HOH . 
L 8 HOH A 157 790 790 HOH HOH . 
L 8 HOH A 158 792 792 HOH HOH . 
L 8 HOH A 159 796 796 HOH HOH . 
L 8 HOH A 160 798 798 HOH HOH . 
L 8 HOH A 161 799 799 HOH HOH . 
L 8 HOH A 162 800 800 HOH HOH . 
L 8 HOH A 163 805 805 HOH HOH . 
L 8 HOH A 164 814 814 HOH HOH . 
L 8 HOH A 165 815 815 HOH HOH . 
L 8 HOH A 166 818 818 HOH HOH . 
L 8 HOH A 167 822 822 HOH HOH . 
L 8 HOH A 168 823 823 HOH HOH . 
L 8 HOH A 169 826 826 HOH HOH . 
L 8 HOH A 170 837 837 HOH HOH . 
L 8 HOH A 171 845 845 HOH HOH . 
L 8 HOH A 172 846 846 HOH HOH . 
L 8 HOH A 173 847 847 HOH HOH . 
L 8 HOH A 174 849 849 HOH HOH . 
L 8 HOH A 175 852 852 HOH HOH . 
L 8 HOH A 176 853 853 HOH HOH . 
L 8 HOH A 177 854 854 HOH HOH . 
L 8 HOH A 178 856 856 HOH HOH . 
L 8 HOH A 179 857 857 HOH HOH . 
L 8 HOH A 180 858 858 HOH HOH . 
L 8 HOH A 181 860 860 HOH HOH . 
L 8 HOH A 182 861 861 HOH HOH . 
L 8 HOH A 183 862 862 HOH HOH . 
L 8 HOH A 184 863 863 HOH HOH . 
L 8 HOH A 185 864 864 HOH HOH . 
L 8 HOH A 186 865 865 HOH HOH . 
L 8 HOH A 187 866 866 HOH HOH . 
L 8 HOH A 188 867 867 HOH HOH . 
L 8 HOH A 189 868 868 HOH HOH . 
L 8 HOH A 190 869 869 HOH HOH . 
L 8 HOH A 191 870 870 HOH HOH . 
L 8 HOH A 192 871 871 HOH HOH . 
L 8 HOH A 193 872 872 HOH HOH . 
L 8 HOH A 194 873 873 HOH HOH . 
L 8 HOH A 195 880 880 HOH HOH . 
L 8 HOH A 196 881 881 HOH HOH . 
L 8 HOH A 197 882 882 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . G 5 7.792 -13.507 27.084 1 35.94 ? C1 BME 594 A 1 
HETATM 2 C C2 BME . . . G 5 7.446 -12.308 27.984 1 34.52 ? C2 BME 594 A 1 
HETATM 3 O O1 BME . . . G 5 7.188 -13.532 25.969 1 39.86 ? O1 BME 594 A 1 
HETATM 4 S S2 BME . . . G 5 7.872 -10.814 27.22 1 34.18 ? S2 BME 594 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#