data_1YMC
#
_model_server_result.job_id            ZyVCKdUK-s431T5o7OxdGg 
_model_server_result.datetime_utc      '2024-12-26 13:59:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ymc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":156}' 
#
_entry.id    1YMC 
#
_exptl.entry_id    1YMC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              26.017 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYANIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107 
_cell.angle_gamma         90 
_cell.entry_id            1YMC 
_cell.length_a            64.5 
_cell.length_b            28.91 
_cell.length_c            35.66 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YMC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE CLN . A CLN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc2 D FE CLN . A CLN 154 1_555 C C CYN . A CYN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 D FE CLN . A CLN 154 1_555 C N CYN . A CYN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
#
_chem_comp.formula           'C N -1' 
_chem_comp.formula_weight    26.017 
_chem_comp.id                CYN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYANIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             N 
_chem_comp_bond.comp_id               CYN 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          154 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     1YMC 
_atom_sites.fract_transf_matrix[1][1]    0.015504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00474 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.03459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 155 155 SO4 SO4 . 
C 3 CYN A 1 156 156 CYN CN . 
D 4 CLN A 1 154 154 CLN CLN . 
E 5 HOH A 1 157 157 HOH HOH . 
E 5 HOH A 2 158 158 HOH HOH . 
E 5 HOH A 3 159 159 HOH HOH . 
E 5 HOH A 4 160 160 HOH HOH . 
E 5 HOH A 5 161 161 HOH HOH . 
E 5 HOH A 6 162 162 HOH HOH . 
E 5 HOH A 7 163 163 HOH HOH . 
E 5 HOH A 8 164 164 HOH HOH . 
E 5 HOH A 9 165 165 HOH HOH . 
E 5 HOH A 10 166 166 HOH HOH . 
E 5 HOH A 11 167 167 HOH HOH . 
E 5 HOH A 12 168 168 HOH HOH . 
E 5 HOH A 13 169 169 HOH HOH . 
E 5 HOH A 14 170 170 HOH HOH . 
E 5 HOH A 15 171 171 HOH HOH . 
E 5 HOH A 16 172 172 HOH HOH . 
E 5 HOH A 17 173 173 HOH HOH . 
E 5 HOH A 18 174 174 HOH HOH . 
E 5 HOH A 19 175 175 HOH HOH . 
E 5 HOH A 20 176 176 HOH HOH . 
E 5 HOH A 21 177 177 HOH HOH . 
E 5 HOH A 22 178 178 HOH HOH . 
E 5 HOH A 23 179 179 HOH HOH . 
E 5 HOH A 24 180 180 HOH HOH . 
E 5 HOH A 25 181 181 HOH HOH . 
E 5 HOH A 26 182 182 HOH HOH . 
E 5 HOH A 27 183 183 HOH HOH . 
E 5 HOH A 28 184 184 HOH HOH . 
E 5 HOH A 29 185 185 HOH HOH . 
E 5 HOH A 30 186 186 HOH HOH . 
E 5 HOH A 31 187 187 HOH HOH . 
E 5 HOH A 32 188 188 HOH HOH . 
E 5 HOH A 33 189 189 HOH HOH . 
E 5 HOH A 34 190 190 HOH HOH . 
E 5 HOH A 35 191 191 HOH HOH . 
E 5 HOH A 36 192 192 HOH HOH . 
E 5 HOH A 37 193 193 HOH HOH . 
E 5 HOH A 38 194 194 HOH HOH . 
E 5 HOH A 39 195 195 HOH HOH . 
E 5 HOH A 40 196 196 HOH HOH . 
E 5 HOH A 41 197 197 HOH HOH . 
E 5 HOH A 42 198 198 HOH HOH . 
E 5 HOH A 43 199 199 HOH HOH . 
E 5 HOH A 44 200 200 HOH HOH . 
E 5 HOH A 45 201 201 HOH HOH . 
E 5 HOH A 46 202 202 HOH HOH . 
E 5 HOH A 47 203 203 HOH HOH . 
E 5 HOH A 48 204 204 HOH HOH . 
E 5 HOH A 49 205 205 HOH HOH . 
E 5 HOH A 50 206 206 HOH HOH . 
E 5 HOH A 51 207 207 HOH HOH . 
E 5 HOH A 52 208 208 HOH HOH . 
E 5 HOH A 53 209 209 HOH HOH . 
E 5 HOH A 54 210 210 HOH HOH . 
E 5 HOH A 55 211 211 HOH HOH . 
E 5 HOH A 56 212 212 HOH HOH . 
E 5 HOH A 57 213 213 HOH HOH . 
E 5 HOH A 58 214 214 HOH HOH . 
E 5 HOH A 59 215 215 HOH HOH . 
E 5 HOH A 60 216 216 HOH HOH . 
E 5 HOH A 61 217 217 HOH HOH . 
E 5 HOH A 62 218 218 HOH HOH . 
E 5 HOH A 63 219 219 HOH HOH . 
E 5 HOH A 64 220 220 HOH HOH . 
E 5 HOH A 65 221 221 HOH HOH . 
E 5 HOH A 66 222 222 HOH HOH . 
E 5 HOH A 67 223 223 HOH HOH . 
E 5 HOH A 68 224 224 HOH HOH . 
E 5 HOH A 69 225 225 HOH HOH . 
E 5 HOH A 70 226 226 HOH HOH . 
E 5 HOH A 71 227 227 HOH HOH . 
E 5 HOH A 72 228 228 HOH HOH . 
E 5 HOH A 73 229 229 HOH HOH . 
E 5 HOH A 74 230 230 HOH HOH . 
E 5 HOH A 75 231 231 HOH HOH . 
E 5 HOH A 76 232 232 HOH HOH . 
E 5 HOH A 77 233 233 HOH HOH . 
E 5 HOH A 78 234 234 HOH HOH . 
E 5 HOH A 79 235 235 HOH HOH . 
E 5 HOH A 80 236 236 HOH HOH . 
E 5 HOH A 81 237 237 HOH HOH . 
E 5 HOH A 82 238 238 HOH HOH . 
E 5 HOH A 83 239 239 HOH HOH . 
E 5 HOH A 84 240 240 HOH HOH . 
E 5 HOH A 85 241 241 HOH HOH . 
E 5 HOH A 86 242 242 HOH HOH . 
E 5 HOH A 87 243 243 HOH HOH . 
E 5 HOH A 88 244 244 HOH HOH . 
E 5 HOH A 89 245 245 HOH HOH . 
E 5 HOH A 90 246 246 HOH HOH . 
E 5 HOH A 91 247 247 HOH HOH . 
E 5 HOH A 92 248 248 HOH HOH . 
E 5 HOH A 93 249 249 HOH HOH . 
E 5 HOH A 94 250 250 HOH HOH . 
E 5 HOH A 95 251 251 HOH HOH . 
E 5 HOH A 96 252 252 HOH HOH . 
E 5 HOH A 97 253 253 HOH HOH . 
E 5 HOH A 98 254 254 HOH HOH . 
E 5 HOH A 99 255 255 HOH HOH . 
E 5 HOH A 100 256 256 HOH HOH . 
E 5 HOH A 101 257 257 HOH HOH . 
E 5 HOH A 102 258 258 HOH HOH . 
E 5 HOH A 103 259 259 HOH HOH . 
E 5 HOH A 104 260 260 HOH HOH . 
E 5 HOH A 105 261 261 HOH HOH . 
E 5 HOH A 106 262 262 HOH HOH . 
E 5 HOH A 107 263 263 HOH HOH . 
E 5 HOH A 108 264 264 HOH HOH . 
E 5 HOH A 109 265 265 HOH HOH . 
E 5 HOH A 110 266 266 HOH HOH . 
E 5 HOH A 111 267 267 HOH HOH . 
E 5 HOH A 112 268 268 HOH HOH . 
E 5 HOH A 113 269 269 HOH HOH . 
E 5 HOH A 114 270 270 HOH HOH . 
E 5 HOH A 115 271 271 HOH HOH . 
E 5 HOH A 116 272 272 HOH HOH . 
E 5 HOH A 117 273 273 HOH HOH . 
E 5 HOH A 118 274 274 HOH HOH . 
E 5 HOH A 119 275 275 HOH HOH . 
E 5 HOH A 120 276 276 HOH HOH . 
E 5 HOH A 121 277 277 HOH HOH . 
E 5 HOH A 122 278 278 HOH HOH . 
E 5 HOH A 123 279 279 HOH HOH . 
E 5 HOH A 124 280 280 HOH HOH . 
E 5 HOH A 125 281 281 HOH HOH . 
E 5 HOH A 126 282 282 HOH HOH . 
E 5 HOH A 127 283 283 HOH HOH . 
E 5 HOH A 128 284 284 HOH HOH . 
E 5 HOH A 129 285 285 HOH HOH . 
E 5 HOH A 130 286 286 HOH HOH . 
E 5 HOH A 131 287 287 HOH HOH . 
E 5 HOH A 132 288 288 HOH HOH . 
E 5 HOH A 133 289 289 HOH HOH . 
E 5 HOH A 134 290 290 HOH HOH . 
E 5 HOH A 135 291 291 HOH HOH . 
E 5 HOH A 136 292 292 HOH HOH . 
E 5 HOH A 137 293 293 HOH HOH . 
E 5 HOH A 138 294 294 HOH HOH . 
E 5 HOH A 139 295 295 HOH HOH . 
E 5 HOH A 140 296 296 HOH HOH . 
E 5 HOH A 141 297 297 HOH HOH . 
E 5 HOH A 142 298 298 HOH HOH . 
E 5 HOH A 143 299 299 HOH HOH . 
E 5 HOH A 144 300 300 HOH HOH . 
E 5 HOH A 145 301 301 HOH HOH . 
E 5 HOH A 146 302 302 HOH HOH . 
E 5 HOH A 147 303 303 HOH HOH . 
E 5 HOH A 148 304 304 HOH HOH . 
E 5 HOH A 149 305 305 HOH HOH . 
E 5 HOH A 150 306 306 HOH HOH . 
E 5 HOH A 151 307 307 HOH HOH . 
E 5 HOH A 152 308 308 HOH HOH . 
E 5 HOH A 153 309 309 HOH HOH . 
E 5 HOH A 154 310 310 HOH HOH . 
E 5 HOH A 155 311 311 HOH HOH . 
E 5 HOH A 156 312 312 HOH HOH . 
E 5 HOH A 157 313 313 HOH HOH . 
E 5 HOH A 158 314 314 HOH HOH . 
E 5 HOH A 159 315 315 HOH HOH . 
E 5 HOH A 160 316 316 HOH HOH . 
E 5 HOH A 161 317 317 HOH HOH . 
E 5 HOH A 162 318 318 HOH HOH . 
E 5 HOH A 163 319 319 HOH HOH . 
E 5 HOH A 164 320 320 HOH HOH . 
E 5 HOH A 165 321 321 HOH HOH . 
E 5 HOH A 166 322 322 HOH HOH . 
E 5 HOH A 167 323 323 HOH HOH . 
E 5 HOH A 168 324 324 HOH HOH . 
E 5 HOH A 169 325 325 HOH HOH . 
E 5 HOH A 170 326 326 HOH HOH . 
E 5 HOH A 171 327 327 HOH HOH . 
E 5 HOH A 172 328 328 HOH HOH . 
E 5 HOH A 173 329 329 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CYN . . . C 3 16.223 28.375 5.123 1 15.81 ? C CYN 156 A 1 
HETATM 2 N N CYN . . . C 3 16.779 27.531 4.81 1 14.48 ? N CYN 156 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           2 
#