data_1YNU # _model_server_result.job_id MAgioikuvPRg0aNEqawivA _model_server_result.datetime_utc '2024-10-19 15:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ynu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 1YNU # _exptl.entry_id 1YNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.2 _cell.angle_gamma 90 _cell.entry_id 1YNU _cell.length_a 103.3 _cell.length_b 59.36 _cell.length_c 79.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 58.867309 0 65.380719 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 273 A LYS 273 1_555 E CG PY4 . A PY4 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? metalc ? metalc1 A OD1 ASP 84 A ASP 84 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A ND1 HIS 86 A HIS 86 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A NE2 HIS 113 A HIS 113 1_555 B NI NI . A NI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 A O LEU 304 A LEU 304 1_555 D K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc5 A O LEU 304 A LEU 304 2_656 D K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc6 B NI NI . A NI 701 1_555 G O HOH . A HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc7 B NI NI . A NI 701 1_555 G O HOH . A HOH 983 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc8 B NI NI . A NI 701 1_555 G O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc9 C NI NI . A NI 702 1_555 F N TRS . A TRS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc10 C NI NI . A NI 702 1_555 F O1 TRS . A TRS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc11 C NI NI . A NI 702 1_555 G O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc12 D K K . A K 801 1_555 G O HOH . A HOH 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc13 D K K . A K 801 1_555 G O HOH . A HOH 927 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YNU _atom_sites.fract_transf_matrix[1][1] 0.009681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006579 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 701 1 NI NI2 . C 2 NI A 1 702 2 NI NI2 . D 3 K A 1 801 1 K K1 . E 4 PY4 A 1 600 600 PY4 LVG . F 5 TRS A 1 901 1 TRS TRS . G 6 HOH A 1 902 1 HOH HOH . G 6 HOH A 2 903 2 HOH HOH . G 6 HOH A 3 904 3 HOH HOH . G 6 HOH A 4 905 4 HOH HOH . G 6 HOH A 5 906 5 HOH HOH . G 6 HOH A 6 907 6 HOH HOH . G 6 HOH A 7 908 7 HOH HOH . G 6 HOH A 8 909 8 HOH HOH . G 6 HOH A 9 910 9 HOH HOH . G 6 HOH A 10 911 10 HOH HOH . G 6 HOH A 11 912 11 HOH HOH . G 6 HOH A 12 913 12 HOH HOH . G 6 HOH A 13 914 13 HOH HOH . G 6 HOH A 14 915 14 HOH HOH . G 6 HOH A 15 916 15 HOH HOH . G 6 HOH A 16 917 16 HOH HOH . G 6 HOH A 17 918 17 HOH HOH . G 6 HOH A 18 919 19 HOH HOH . G 6 HOH A 19 920 20 HOH HOH . G 6 HOH A 20 921 21 HOH HOH . G 6 HOH A 21 922 22 HOH HOH . G 6 HOH A 22 923 23 HOH HOH . G 6 HOH A 23 924 25 HOH HOH . G 6 HOH A 24 925 26 HOH HOH . G 6 HOH A 25 926 27 HOH HOH . G 6 HOH A 26 927 28 HOH HOH . G 6 HOH A 27 928 29 HOH HOH . G 6 HOH A 28 929 30 HOH HOH . G 6 HOH A 29 930 31 HOH HOH . G 6 HOH A 30 931 32 HOH HOH . G 6 HOH A 31 932 33 HOH HOH . G 6 HOH A 32 933 34 HOH HOH . G 6 HOH A 33 934 35 HOH HOH . G 6 HOH A 34 935 36 HOH HOH . G 6 HOH A 35 936 37 HOH HOH . G 6 HOH A 36 937 38 HOH HOH . G 6 HOH A 37 938 39 HOH HOH . G 6 HOH A 38 939 40 HOH HOH . G 6 HOH A 39 940 41 HOH HOH . G 6 HOH A 40 941 42 HOH HOH . G 6 HOH A 41 942 43 HOH HOH . G 6 HOH A 42 943 44 HOH HOH . G 6 HOH A 43 944 45 HOH HOH . G 6 HOH A 44 945 46 HOH HOH . G 6 HOH A 45 946 47 HOH HOH . G 6 HOH A 46 947 48 HOH HOH . G 6 HOH A 47 948 49 HOH HOH . G 6 HOH A 48 949 50 HOH HOH . G 6 HOH A 49 950 51 HOH HOH . G 6 HOH A 50 951 52 HOH HOH . G 6 HOH A 51 952 53 HOH HOH . G 6 HOH A 52 953 54 HOH HOH . G 6 HOH A 53 954 55 HOH HOH . G 6 HOH A 54 955 56 HOH HOH . G 6 HOH A 55 956 57 HOH HOH . G 6 HOH A 56 957 58 HOH HOH . G 6 HOH A 57 958 59 HOH HOH . G 6 HOH A 58 959 60 HOH HOH . G 6 HOH A 59 960 61 HOH HOH . G 6 HOH A 60 961 62 HOH HOH . G 6 HOH A 61 962 63 HOH HOH . G 6 HOH A 62 963 64 HOH HOH . G 6 HOH A 63 964 65 HOH HOH . G 6 HOH A 64 965 66 HOH HOH . G 6 HOH A 65 966 67 HOH HOH . G 6 HOH A 66 967 68 HOH HOH . G 6 HOH A 67 968 69 HOH HOH . G 6 HOH A 68 969 70 HOH HOH . G 6 HOH A 69 970 71 HOH HOH . G 6 HOH A 70 971 72 HOH HOH . G 6 HOH A 71 972 73 HOH HOH . G 6 HOH A 72 973 74 HOH HOH . G 6 HOH A 73 974 76 HOH HOH . G 6 HOH A 74 975 77 HOH HOH . G 6 HOH A 75 976 78 HOH HOH . G 6 HOH A 76 977 79 HOH HOH . G 6 HOH A 77 978 80 HOH HOH . G 6 HOH A 78 979 81 HOH HOH . G 6 HOH A 79 980 82 HOH HOH . G 6 HOH A 80 981 83 HOH HOH . G 6 HOH A 81 982 85 HOH HOH . G 6 HOH A 82 983 86 HOH HOH . G 6 HOH A 83 984 87 HOH HOH . G 6 HOH A 84 985 88 HOH HOH . G 6 HOH A 85 986 89 HOH HOH . G 6 HOH A 86 987 91 HOH HOH . G 6 HOH A 87 988 92 HOH HOH . G 6 HOH A 88 989 93 HOH HOH . G 6 HOH A 89 990 95 HOH HOH . G 6 HOH A 90 991 96 HOH HOH . G 6 HOH A 91 992 97 HOH HOH . G 6 HOH A 92 993 99 HOH HOH . G 6 HOH A 93 994 100 HOH HOH . G 6 HOH A 94 995 101 HOH HOH . G 6 HOH A 95 996 103 HOH HOH . G 6 HOH A 96 997 104 HOH HOH . G 6 HOH A 97 998 105 HOH HOH . G 6 HOH A 98 999 106 HOH HOH . G 6 HOH A 99 1000 107 HOH HOH . G 6 HOH A 100 1001 108 HOH HOH . G 6 HOH A 101 1002 109 HOH HOH . G 6 HOH A 102 1003 111 HOH HOH . G 6 HOH A 103 1004 112 HOH HOH . G 6 HOH A 104 1005 113 HOH HOH . G 6 HOH A 105 1006 114 HOH HOH . G 6 HOH A 106 1007 115 HOH HOH . G 6 HOH A 107 1008 116 HOH HOH . G 6 HOH A 108 1009 117 HOH HOH . G 6 HOH A 109 1010 118 HOH HOH . G 6 HOH A 110 1011 119 HOH HOH . G 6 HOH A 111 1012 120 HOH HOH . G 6 HOH A 112 1013 121 HOH HOH . G 6 HOH A 113 1014 122 HOH HOH . G 6 HOH A 114 1015 123 HOH HOH . G 6 HOH A 115 1016 124 HOH HOH . G 6 HOH A 116 1017 126 HOH HOH . G 6 HOH A 117 1018 127 HOH HOH . G 6 HOH A 118 1019 128 HOH HOH . G 6 HOH A 119 1020 129 HOH HOH . G 6 HOH A 120 1021 130 HOH HOH . G 6 HOH A 121 1022 131 HOH HOH . G 6 HOH A 122 1023 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.434 _atom_site.Cartn_y -4.65 _atom_site.Cartn_z 32.69 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 24.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #