data_1YOE # _model_server_result.job_id NABYTdfh9vjToW7tqrbKig _model_server_result.datetime_utc '2024-11-28 00:06:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yoe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1YOE # _exptl.entry_id 1YOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YOE _cell.length_a 76.466 _cell.length_b 84.062 _cell.length_c 112.483 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PQS tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4 A,B,C,D 2 1,3 A,B,C,D 3 1,3 A,B,C,D 4 1,5,3,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 112.483 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 112.483 5 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 84.062 0 6 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 84.062 112.483 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 10 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A OD1 ASP 26 A ASP 15 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc3 A OD2 ASP 26 A ASP 15 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc4 A O THR 135 A THR 124 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 A OD2 ASP 252 A ASP 241 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 C CA CA . A CA 1001 1_555 B O2 RIB . A RIB 2001 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.727 ? metalc ? metalc7 C CA CA . A CA 1001 1_555 B O2 RIB . A RIB 2001 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.437 ? metalc ? metalc8 C CA CA . A CA 1001 1_555 B O3 RIB . A RIB 2001 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.7 ? metalc ? metalc9 C CA CA . A CA 1001 1_555 B O3 RIB . A RIB 2001 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.606 ? metalc ? metalc10 C CA CA . A CA 1001 1_555 D O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YOE _atom_sites.fract_transf_matrix[1][1] 0.013078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RIB A 1 2001 1 RIB RIB . C 3 CA A 1 1001 1 CA CA . D 4 HOH A 1 2002 1 HOH HOH . D 4 HOH A 2 2003 2 HOH HOH . D 4 HOH A 3 2004 3 HOH HOH . D 4 HOH A 4 2005 4 HOH HOH . D 4 HOH A 5 2006 5 HOH HOH . D 4 HOH A 6 2007 6 HOH HOH . D 4 HOH A 7 2008 7 HOH HOH . D 4 HOH A 8 2009 8 HOH HOH . D 4 HOH A 9 2010 9 HOH HOH . D 4 HOH A 10 2011 10 HOH HOH . D 4 HOH A 11 2012 11 HOH HOH . D 4 HOH A 12 2013 12 HOH HOH . D 4 HOH A 13 2014 13 HOH HOH . D 4 HOH A 14 2015 14 HOH HOH . D 4 HOH A 15 2016 15 HOH HOH . D 4 HOH A 16 2017 16 HOH HOH . D 4 HOH A 17 2018 17 HOH HOH . D 4 HOH A 18 2019 18 HOH HOH . D 4 HOH A 19 2020 19 HOH HOH . D 4 HOH A 20 2021 20 HOH HOH . D 4 HOH A 21 2022 21 HOH HOH . D 4 HOH A 22 2023 22 HOH HOH . D 4 HOH A 23 2024 23 HOH HOH . D 4 HOH A 24 2025 24 HOH HOH . D 4 HOH A 25 2026 25 HOH HOH . D 4 HOH A 26 2027 26 HOH HOH . D 4 HOH A 27 2028 27 HOH HOH . D 4 HOH A 28 2029 28 HOH HOH . D 4 HOH A 29 2030 29 HOH HOH . D 4 HOH A 30 2031 30 HOH HOH . D 4 HOH A 31 2032 31 HOH HOH . D 4 HOH A 32 2033 32 HOH HOH . D 4 HOH A 33 2034 33 HOH HOH . D 4 HOH A 34 2035 34 HOH HOH . D 4 HOH A 35 2036 35 HOH HOH . D 4 HOH A 36 2037 36 HOH HOH . D 4 HOH A 37 2038 37 HOH HOH . D 4 HOH A 38 2039 38 HOH HOH . D 4 HOH A 39 2040 39 HOH HOH . D 4 HOH A 40 2041 40 HOH HOH . D 4 HOH A 41 2042 41 HOH HOH . D 4 HOH A 42 2043 42 HOH HOH . D 4 HOH A 43 2044 43 HOH HOH . D 4 HOH A 44 2045 44 HOH HOH . D 4 HOH A 45 2046 45 HOH HOH . D 4 HOH A 46 2047 46 HOH HOH . D 4 HOH A 47 2048 47 HOH HOH . D 4 HOH A 48 2049 48 HOH HOH . D 4 HOH A 49 2050 49 HOH HOH . D 4 HOH A 50 2051 50 HOH HOH . D 4 HOH A 51 2052 51 HOH HOH . D 4 HOH A 52 2053 52 HOH HOH . D 4 HOH A 53 2054 53 HOH HOH . D 4 HOH A 54 2055 54 HOH HOH . D 4 HOH A 55 2056 55 HOH HOH . D 4 HOH A 56 2057 56 HOH HOH . D 4 HOH A 57 2058 57 HOH HOH . D 4 HOH A 58 2059 58 HOH HOH . D 4 HOH A 59 2060 59 HOH HOH . D 4 HOH A 60 2061 60 HOH HOH . D 4 HOH A 61 2062 61 HOH HOH . D 4 HOH A 62 2063 62 HOH HOH . D 4 HOH A 63 2064 63 HOH HOH . D 4 HOH A 64 2065 64 HOH HOH . D 4 HOH A 65 2066 65 HOH HOH . D 4 HOH A 66 2067 66 HOH HOH . D 4 HOH A 67 2068 67 HOH HOH . D 4 HOH A 68 2069 68 HOH HOH . D 4 HOH A 69 2070 69 HOH HOH . D 4 HOH A 70 2071 70 HOH HOH . D 4 HOH A 71 2072 71 HOH HOH . D 4 HOH A 72 2073 72 HOH HOH . D 4 HOH A 73 2074 73 HOH HOH . D 4 HOH A 74 2075 74 HOH HOH . D 4 HOH A 75 2076 75 HOH HOH . D 4 HOH A 76 2077 76 HOH HOH . D 4 HOH A 77 2078 77 HOH HOH . D 4 HOH A 78 2079 78 HOH HOH . D 4 HOH A 79 2080 79 HOH HOH . D 4 HOH A 80 2081 80 HOH HOH . D 4 HOH A 81 2082 81 HOH HOH . D 4 HOH A 82 2083 82 HOH HOH . D 4 HOH A 83 2084 83 HOH HOH . D 4 HOH A 84 2085 84 HOH HOH . D 4 HOH A 85 2086 85 HOH HOH . D 4 HOH A 86 2087 86 HOH HOH . D 4 HOH A 87 2088 87 HOH HOH . D 4 HOH A 88 2089 88 HOH HOH . D 4 HOH A 89 2090 89 HOH HOH . D 4 HOH A 90 2091 90 HOH HOH . D 4 HOH A 91 2092 91 HOH HOH . D 4 HOH A 92 2093 92 HOH HOH . D 4 HOH A 93 2094 93 HOH HOH . D 4 HOH A 94 2095 94 HOH HOH . D 4 HOH A 95 2096 95 HOH HOH . D 4 HOH A 96 2097 96 HOH HOH . D 4 HOH A 97 2098 98 HOH HOH . D 4 HOH A 98 2099 99 HOH HOH . D 4 HOH A 99 2100 100 HOH HOH . D 4 HOH A 100 2101 101 HOH HOH . D 4 HOH A 101 2102 102 HOH HOH . D 4 HOH A 102 2103 103 HOH HOH . D 4 HOH A 103 2104 104 HOH HOH . D 4 HOH A 104 2105 105 HOH HOH . D 4 HOH A 105 2106 106 HOH HOH . D 4 HOH A 106 2107 107 HOH HOH . D 4 HOH A 107 2108 108 HOH HOH . D 4 HOH A 108 2109 109 HOH HOH . D 4 HOH A 109 2110 110 HOH HOH . D 4 HOH A 110 2111 111 HOH HOH . D 4 HOH A 111 2112 112 HOH HOH . D 4 HOH A 112 2113 113 HOH HOH . D 4 HOH A 113 2114 114 HOH HOH . D 4 HOH A 114 2115 115 HOH HOH . D 4 HOH A 115 2116 116 HOH HOH . D 4 HOH A 116 2117 117 HOH HOH . D 4 HOH A 117 2118 118 HOH HOH . D 4 HOH A 118 2119 119 HOH HOH . D 4 HOH A 119 2120 120 HOH HOH . D 4 HOH A 120 2121 121 HOH HOH . D 4 HOH A 121 2122 122 HOH HOH . D 4 HOH A 122 2123 123 HOH HOH . D 4 HOH A 123 2124 124 HOH HOH . D 4 HOH A 124 2125 125 HOH HOH . D 4 HOH A 125 2126 126 HOH HOH . D 4 HOH A 126 2127 128 HOH HOH . D 4 HOH A 127 2128 129 HOH HOH . D 4 HOH A 128 2129 130 HOH HOH . D 4 HOH A 129 2130 131 HOH HOH . D 4 HOH A 130 2131 132 HOH HOH . D 4 HOH A 131 2132 133 HOH HOH . D 4 HOH A 132 2133 134 HOH HOH . D 4 HOH A 133 2134 135 HOH HOH . D 4 HOH A 134 2135 136 HOH HOH . D 4 HOH A 135 2136 137 HOH HOH . D 4 HOH A 136 2137 138 HOH HOH . D 4 HOH A 137 2138 140 HOH HOH . D 4 HOH A 138 2139 141 HOH HOH . D 4 HOH A 139 2140 142 HOH HOH . D 4 HOH A 140 2141 143 HOH HOH . D 4 HOH A 141 2142 144 HOH HOH . D 4 HOH A 142 2143 145 HOH HOH . D 4 HOH A 143 2144 146 HOH HOH . D 4 HOH A 144 2145 147 HOH HOH . D 4 HOH A 145 2146 148 HOH HOH . D 4 HOH A 146 2147 149 HOH HOH . D 4 HOH A 147 2148 150 HOH HOH . D 4 HOH A 148 2149 151 HOH HOH . D 4 HOH A 149 2150 153 HOH HOH . D 4 HOH A 150 2151 154 HOH HOH . D 4 HOH A 151 2152 155 HOH HOH . D 4 HOH A 152 2153 156 HOH HOH . D 4 HOH A 153 2154 157 HOH HOH . D 4 HOH A 154 2155 158 HOH HOH . D 4 HOH A 155 2156 159 HOH HOH . D 4 HOH A 156 2157 160 HOH HOH . D 4 HOH A 157 2158 161 HOH HOH . D 4 HOH A 158 2159 162 HOH HOH . D 4 HOH A 159 2160 163 HOH HOH . D 4 HOH A 160 2161 164 HOH HOH . D 4 HOH A 161 2162 166 HOH HOH . D 4 HOH A 162 2163 167 HOH HOH . D 4 HOH A 163 2164 168 HOH HOH . D 4 HOH A 164 2165 169 HOH HOH . D 4 HOH A 165 2166 170 HOH HOH . D 4 HOH A 166 2167 171 HOH HOH . D 4 HOH A 167 2168 172 HOH HOH . D 4 HOH A 168 2169 173 HOH HOH . D 4 HOH A 169 2170 174 HOH HOH . D 4 HOH A 170 2171 175 HOH HOH . D 4 HOH A 171 2172 176 HOH HOH . D 4 HOH A 172 2173 177 HOH HOH . D 4 HOH A 173 2174 178 HOH HOH . D 4 HOH A 174 2175 179 HOH HOH . D 4 HOH A 175 2176 180 HOH HOH . D 4 HOH A 176 2177 181 HOH HOH . D 4 HOH A 177 2178 182 HOH HOH . D 4 HOH A 178 2179 183 HOH HOH . D 4 HOH A 179 2180 186 HOH HOH . D 4 HOH A 180 2181 188 HOH HOH . D 4 HOH A 181 2182 189 HOH HOH . D 4 HOH A 182 2183 191 HOH HOH . D 4 HOH A 183 2184 192 HOH HOH . D 4 HOH A 184 2185 196 HOH HOH . D 4 HOH A 185 2186 198 HOH HOH . D 4 HOH A 186 2187 199 HOH HOH . D 4 HOH A 187 2188 202 HOH HOH . D 4 HOH A 188 2189 204 HOH HOH . D 4 HOH A 189 2190 205 HOH HOH . D 4 HOH A 190 2191 206 HOH HOH . D 4 HOH A 191 2192 207 HOH HOH . D 4 HOH A 192 2193 208 HOH HOH . D 4 HOH A 193 2194 210 HOH HOH . D 4 HOH A 194 2195 213 HOH HOH . D 4 HOH A 195 2196 219 HOH HOH . D 4 HOH A 196 2197 220 HOH HOH . D 4 HOH A 197 2198 221 HOH HOH . D 4 HOH A 198 2199 222 HOH HOH . D 4 HOH A 199 2200 224 HOH HOH . D 4 HOH A 200 2201 226 HOH HOH . D 4 HOH A 201 2202 227 HOH HOH . D 4 HOH A 202 2203 228 HOH HOH . D 4 HOH A 203 2204 229 HOH HOH . D 4 HOH A 204 2205 230 HOH HOH . D 4 HOH A 205 2206 231 HOH HOH . D 4 HOH A 206 2207 236 HOH HOH . D 4 HOH A 207 2208 237 HOH HOH . D 4 HOH A 208 2209 238 HOH HOH . D 4 HOH A 209 2210 242 HOH HOH . D 4 HOH A 210 2211 243 HOH HOH . D 4 HOH A 211 2212 245 HOH HOH . D 4 HOH A 212 2213 248 HOH HOH . D 4 HOH A 213 2214 252 HOH HOH . D 4 HOH A 214 2215 264 HOH HOH . D 4 HOH A 215 2216 269 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.108 _atom_site.Cartn_y 22.427 _atom_site.Cartn_z 38.071 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #