data_1YOG # _model_server_result.job_id 2N25rTugAcQSTx8wUcLhaQ _model_server_result.datetime_utc '2024-11-14 05:59:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 1YOG # _exptl.entry_id 1YOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 1YOG _cell.length_a 64.71 _cell.length_b 30.78 _cell.length_c 34.87 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CO _struct_conn.ptnr2_label_comp_id COH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id COH _struct_conn.ptnr2_auth_seq_id 154 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.184 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 70 n n CO NB COH sing 71 n n CO NC COH sing 72 n n CO ND COH sing 73 n n CHA C1A COH doub 74 n n CHA C4D COH sing 75 n n CHA HHA COH sing 76 n n CHB C4A COH sing 77 n n CHB C1B COH doub 78 n n CHB HHB COH sing 79 n n CHC C4B COH doub 80 n n CHC C1C COH sing 81 n n CHC HHC COH sing 82 n n CHD C4C COH doub 83 n n CHD C1D COH sing 84 n n CHD HHD COH sing 85 n n NA C1A COH sing 86 n n NA C4A COH doub 87 n n C1A C2A COH sing 88 n n C2A C3A COH doub 89 n n C2A CAA COH sing 90 n n C3A C4A COH sing 91 n n C3A CMA COH sing 92 n n CMA HMA1 COH sing 93 n n CMA HMA2 COH sing 94 n n CMA HMA3 COH sing 95 n n CAA CBA COH sing 96 n n CAA HAA1 COH sing 97 n n CAA HAA2 COH sing 98 n n CBA CGA COH sing 99 n n CBA HBA1 COH sing 100 n n CBA HBA2 COH sing 101 n n CGA O1A COH doub 102 n n CGA O2A COH sing 103 n n O2A H2A COH sing 104 n n NB C1B COH sing 105 n n NB C4B COH sing 106 n n C1B C2B COH sing 107 n n C2B C3B COH doub 108 n n C2B CMB COH sing 109 n n C3B C4B COH sing 110 n n C3B CAB COH sing 111 n n CMB HMB1 COH sing 112 n n CMB HMB2 COH sing 113 n n CMB HMB3 COH sing 114 n n CAB CBB COH doub 115 n n CAB HAB COH sing 116 n n CBB HBB1 COH sing 117 n n CBB HBB2 COH sing 118 n n NC C1C COH doub 119 n n NC C4C COH sing 120 n n C1C C2C COH sing 121 n n C2C C3C COH doub 122 n n C2C CMC COH sing 123 n n C3C C4C COH sing 124 n n C3C CAC COH sing 125 n n CMC HMC1 COH sing 126 n n CMC HMC2 COH sing 127 n n CMC HMC3 COH sing 128 n n CAC CBC COH doub 129 n n CAC HAC COH sing 130 n n CBC HBC1 COH sing 131 n n CBC HBC2 COH sing 132 n n ND C1D COH sing 133 n y ND C4D COH sing 134 n y C1D C2D COH doub 135 n y C2D C3D COH sing 136 n y C2D CMD COH sing 137 n n C3D C4D COH doub 138 n y C3D CAD COH sing 139 n n CMD HMD1 COH sing 140 n n CMD HMD2 COH sing 141 n n CMD HMD3 COH sing 142 n n CAD CBD COH sing 143 n n CAD HAD1 COH sing 144 n n CAD HAD2 COH sing 145 n n CBD CGD COH sing 146 n n CBD HBD1 COH sing 147 n n CBD HBD2 COH sing 148 n n CGD O1D COH doub 149 n n CGD O2D COH sing 150 n n O2D H2D COH sing 151 n n # _atom_sites.entry_id 1YOG _atom_sites.fract_transf_matrix[1][1] 0.015454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004455 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 200 200 SO4 SO4 . C 3 COH A 1 154 154 COH COH . D 4 HOH A 1 155 155 HOH HOH . D 4 HOH A 2 156 156 HOH HOH . D 4 HOH A 3 201 201 HOH HOH . D 4 HOH A 4 202 202 HOH HOH . D 4 HOH A 5 203 203 HOH HOH . D 4 HOH A 6 204 204 HOH HOH . D 4 HOH A 7 205 205 HOH HOH . D 4 HOH A 8 206 206 HOH HOH . D 4 HOH A 9 207 207 HOH HOH . D 4 HOH A 10 208 208 HOH HOH . D 4 HOH A 11 209 209 HOH HOH . D 4 HOH A 12 210 210 HOH HOH . D 4 HOH A 13 211 211 HOH HOH . D 4 HOH A 14 212 212 HOH HOH . D 4 HOH A 15 213 213 HOH HOH . D 4 HOH A 16 214 214 HOH HOH . D 4 HOH A 17 215 215 HOH HOH . D 4 HOH A 18 216 216 HOH HOH . D 4 HOH A 19 217 217 HOH HOH . D 4 HOH A 20 218 218 HOH HOH . D 4 HOH A 21 219 219 HOH HOH . D 4 HOH A 22 220 220 HOH HOH . D 4 HOH A 23 221 221 HOH HOH . D 4 HOH A 24 222 222 HOH HOH . D 4 HOH A 25 223 223 HOH HOH . D 4 HOH A 26 224 224 HOH HOH . D 4 HOH A 27 225 225 HOH HOH . D 4 HOH A 28 226 226 HOH HOH . D 4 HOH A 29 227 227 HOH HOH . D 4 HOH A 30 228 228 HOH HOH . D 4 HOH A 31 229 229 HOH HOH . D 4 HOH A 32 230 230 HOH HOH . D 4 HOH A 33 231 231 HOH HOH . D 4 HOH A 34 232 232 HOH HOH . D 4 HOH A 35 233 233 HOH HOH . D 4 HOH A 36 234 234 HOH HOH . D 4 HOH A 37 235 235 HOH HOH . D 4 HOH A 38 236 236 HOH HOH . D 4 HOH A 39 237 237 HOH HOH . D 4 HOH A 40 238 238 HOH HOH . D 4 HOH A 41 239 239 HOH HOH . D 4 HOH A 42 240 240 HOH HOH . D 4 HOH A 43 241 241 HOH HOH . D 4 HOH A 44 242 242 HOH HOH . D 4 HOH A 45 243 243 HOH HOH . D 4 HOH A 46 244 244 HOH HOH . D 4 HOH A 47 245 245 HOH HOH . D 4 HOH A 48 246 246 HOH HOH . D 4 HOH A 49 247 247 HOH HOH . D 4 HOH A 50 248 248 HOH HOH . D 4 HOH A 51 249 249 HOH HOH . D 4 HOH A 52 250 250 HOH HOH . D 4 HOH A 53 251 251 HOH HOH . D 4 HOH A 54 252 252 HOH HOH . D 4 HOH A 55 253 253 HOH HOH . D 4 HOH A 56 254 254 HOH HOH . D 4 HOH A 57 255 255 HOH HOH . D 4 HOH A 58 256 256 HOH HOH . D 4 HOH A 59 257 257 HOH HOH . D 4 HOH A 60 258 258 HOH HOH . D 4 HOH A 61 259 259 HOH HOH . D 4 HOH A 62 260 260 HOH HOH . D 4 HOH A 63 261 261 HOH HOH . D 4 HOH A 64 262 262 HOH HOH . D 4 HOH A 65 263 263 HOH HOH . D 4 HOH A 66 264 264 HOH HOH . D 4 HOH A 67 265 265 HOH HOH . D 4 HOH A 68 266 266 HOH HOH . D 4 HOH A 69 267 267 HOH HOH . D 4 HOH A 70 268 268 HOH HOH . D 4 HOH A 71 269 269 HOH HOH . D 4 HOH A 72 270 270 HOH HOH . D 4 HOH A 73 271 271 HOH HOH . D 4 HOH A 74 272 272 HOH HOH . D 4 HOH A 75 273 273 HOH HOH . D 4 HOH A 76 274 274 HOH HOH . D 4 HOH A 77 275 275 HOH HOH . D 4 HOH A 78 276 276 HOH HOH . D 4 HOH A 79 277 277 HOH HOH . D 4 HOH A 80 278 278 HOH HOH . D 4 HOH A 81 279 279 HOH HOH . D 4 HOH A 82 280 280 HOH HOH . D 4 HOH A 83 281 281 HOH HOH . D 4 HOH A 84 282 282 HOH HOH . D 4 HOH A 85 283 283 HOH HOH . D 4 HOH A 86 284 284 HOH HOH . D 4 HOH A 87 285 285 HOH HOH . D 4 HOH A 88 286 286 HOH HOH . D 4 HOH A 89 287 287 HOH HOH . D 4 HOH A 90 288 288 HOH HOH . D 4 HOH A 91 289 289 HOH HOH . D 4 HOH A 92 290 290 HOH HOH . D 4 HOH A 93 291 291 HOH HOH . D 4 HOH A 94 292 292 HOH HOH . D 4 HOH A 95 293 293 HOH HOH . D 4 HOH A 96 294 294 HOH HOH . D 4 HOH A 97 295 295 HOH HOH . D 4 HOH A 98 296 296 HOH HOH . D 4 HOH A 99 297 297 HOH HOH . D 4 HOH A 100 298 298 HOH HOH . D 4 HOH A 101 299 299 HOH HOH . D 4 HOH A 102 300 300 HOH HOH . D 4 HOH A 103 301 301 HOH HOH . D 4 HOH A 104 302 302 HOH HOH . D 4 HOH A 105 303 303 HOH HOH . D 4 HOH A 106 304 304 HOH HOH . D 4 HOH A 107 305 305 HOH HOH . D 4 HOH A 108 306 306 HOH HOH . D 4 HOH A 109 307 307 HOH HOH . D 4 HOH A 110 308 308 HOH HOH . D 4 HOH A 111 309 309 HOH HOH . D 4 HOH A 112 310 310 HOH HOH . D 4 HOH A 113 311 311 HOH HOH . D 4 HOH A 114 312 312 HOH HOH . D 4 HOH A 115 313 313 HOH HOH . D 4 HOH A 116 314 314 HOH HOH . D 4 HOH A 117 315 315 HOH HOH . D 4 HOH A 118 316 316 HOH HOH . D 4 HOH A 119 317 317 HOH HOH . D 4 HOH A 120 318 318 HOH HOH . D 4 HOH A 121 319 319 HOH HOH . D 4 HOH A 122 320 320 HOH HOH . D 4 HOH A 123 321 321 HOH HOH . D 4 HOH A 124 322 322 HOH HOH . D 4 HOH A 125 323 323 HOH HOH . D 4 HOH A 126 324 324 HOH HOH . D 4 HOH A 127 325 325 HOH HOH . D 4 HOH A 128 326 326 HOH HOH . D 4 HOH A 129 327 327 HOH HOH . D 4 HOH A 130 328 328 HOH HOH . D 4 HOH A 131 329 329 HOH HOH . D 4 HOH A 132 330 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . C 3 14.633 28.026 5.049 1 17.9 ? CO COH 154 A 1 HETATM 2 C CHA COH . . . C 3 15.929 31.072 5.386 1 17.6 ? CHA COH 154 A 1 HETATM 3 C CHB COH . . . C 3 13.785 27.963 8.364 1 13.5 ? CHB COH 154 A 1 HETATM 4 C CHC COH . . . C 3 13.563 24.888 4.745 1 15.8 ? CHC COH 154 A 1 HETATM 5 C CHD COH . . . C 3 15.743 27.87 1.81 1 15.2 ? CHD COH 154 A 1 HETATM 6 N NA COH . . . C 3 14.807 29.226 6.614 1 17.4 ? NA COH 154 A 1 HETATM 7 C C1A COH . . . C 3 15.375 30.518 6.567 1 18.2 ? C1A COH 154 A 1 HETATM 8 C C2A COH . . . C 3 15.269 31.193 7.924 1 20.6 ? C2A COH 154 A 1 HETATM 9 C C3A COH . . . C 3 14.667 30.257 8.801 1 16.5 ? C3A COH 154 A 1 HETATM 10 C C4A COH . . . C 3 14.386 29.065 7.899 1 13.8 ? C4A COH 154 A 1 HETATM 11 C CMA COH . . . C 3 14.279 30.408 10.26 1 15.2 ? CMA COH 154 A 1 HETATM 12 C CAA COH . . . C 3 15.685 32.65 8.338 1 22.6 ? CAA COH 154 A 1 HETATM 13 C CBA COH . . . C 3 14.449 33.548 8.353 1 25.7 ? CBA COH 154 A 1 HETATM 14 C CGA COH . . . C 3 13.787 33.604 6.986 1 29.9 ? CGA COH 154 A 1 HETATM 15 O O1A COH . . . C 3 14.45 34.042 6 1 31.7 ? O1A COH 154 A 1 HETATM 16 O O2A COH . . . C 3 12.638 33.127 6.865 1 33.3 ? O2A COH 154 A 1 HETATM 17 N NB COH . . . C 3 13.848 26.749 6.288 1 13.6 ? NB COH 154 A 1 HETATM 18 C C1B COH . . . C 3 13.527 26.845 7.639 1 14.5 ? C1B COH 154 A 1 HETATM 19 C C2B COH . . . C 3 12.91 25.63 8.184 1 14.5 ? C2B COH 154 A 1 HETATM 20 C C3B COH . . . C 3 12.799 24.792 7.133 1 15.6 ? C3B COH 154 A 1 HETATM 21 C C4B COH . . . C 3 13.38 25.469 5.985 1 14.2 ? C4B COH 154 A 1 HETATM 22 C CMB COH . . . C 3 12.455 25.403 9.595 1 13 ? CMB COH 154 A 1 HETATM 23 C CAB COH . . . C 3 12.225 23.452 7.159 1 15.9 ? CAB COH 154 A 1 HETATM 24 C CBB COH . . . C 3 12.66 22.452 8.009 1 15.9 ? CBB COH 154 A 1 HETATM 25 N NC COH . . . C 3 14.579 26.74 3.489 1 15.1 ? NC COH 154 A 1 HETATM 26 C C1C COH . . . C 3 14.197 25.422 3.636 1 15.8 ? C1C COH 154 A 1 HETATM 27 C C2C COH . . . C 3 14.412 24.701 2.405 1 17.6 ? C2C COH 154 A 1 HETATM 28 C C3C COH . . . C 3 15.068 25.594 1.576 1 17.4 ? C3C COH 154 A 1 HETATM 29 C C4C COH . . . C 3 15.068 26.804 2.259 1 14.1 ? C4C COH 154 A 1 HETATM 30 C CMC COH . . . C 3 13.734 23.354 2.025 1 18.4 ? CMC COH 154 A 1 HETATM 31 C CAC COH . . . C 3 15.667 25.442 0.294 1 19.6 ? CAC COH 154 A 1 HETATM 32 C CBC COH . . . C 3 15.443 24.386 -0.65 1 21.7 ? CBC COH 154 A 1 HETATM 33 N ND COH . . . C 3 15.614 29.181 3.823 1 20.5 ? ND COH 154 A 1 HETATM 34 C C1D COH . . . C 3 15.951 29.045 2.539 1 16.6 ? C1D COH 154 A 1 HETATM 35 C C2D COH . . . C 3 16.676 30.268 1.994 1 19.3 ? C2D COH 154 A 1 HETATM 36 C C3D COH . . . C 3 16.721 31.108 3.03 1 19.1 ? C3D COH 154 A 1 HETATM 37 C C4D COH . . . C 3 16.059 30.501 4.143 1 20 ? C4D COH 154 A 1 HETATM 38 C CMD COH . . . C 3 17.19 30.348 0.562 1 17.4 ? CMD COH 154 A 1 HETATM 39 C CAD COH . . . C 3 17.56 32.372 3.123 1 22.7 ? CAD COH 154 A 1 HETATM 40 C CBD COH . . . C 3 19.038 32.027 3.284 1 27.1 ? CBD COH 154 A 1 HETATM 41 C CGD COH . . . C 3 19.935 33.234 3.006 1 33.5 ? CGD COH 154 A 1 HETATM 42 O O1D COH . . . C 3 20.22 33.543 1.816 1 36.6 ? O1D COH 154 A 1 HETATM 43 O O2D COH . . . C 3 20.34 33.89 3.98 1 34.2 ? O2D COH 154 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #