data_1YOH # _model_server_result.job_id Uo9W7ccV_toBVN5vmgN8PQ _model_server_result.datetime_utc '2024-10-10 17:12:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yoh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 1YOH # _exptl.entry_id 1YOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.76 _cell.angle_gamma 90 _cell.entry_id 1YOH _cell.length_a 64.53 _cell.length_b 30.95 _cell.length_c 34.89 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D CO COH . A COH 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 D CO COH . A COH 154 1_555 E O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 70 n n CO NB COH sing 71 n n CO NC COH sing 72 n n CO ND COH sing 73 n n CHA C1A COH doub 74 n n CHA C4D COH sing 75 n n CHA HHA COH sing 76 n n CHB C4A COH sing 77 n n CHB C1B COH doub 78 n n CHB HHB COH sing 79 n n CHC C4B COH doub 80 n n CHC C1C COH sing 81 n n CHC HHC COH sing 82 n n CHD C4C COH doub 83 n n CHD C1D COH sing 84 n n CHD HHD COH sing 85 n n NA C1A COH sing 86 n n NA C4A COH doub 87 n n C1A C2A COH sing 88 n n C2A C3A COH doub 89 n n C2A CAA COH sing 90 n n C3A C4A COH sing 91 n n C3A CMA COH sing 92 n n CMA HMA1 COH sing 93 n n CMA HMA2 COH sing 94 n n CMA HMA3 COH sing 95 n n CAA CBA COH sing 96 n n CAA HAA1 COH sing 97 n n CAA HAA2 COH sing 98 n n CBA CGA COH sing 99 n n CBA HBA1 COH sing 100 n n CBA HBA2 COH sing 101 n n CGA O1A COH doub 102 n n CGA O2A COH sing 103 n n O2A H2A COH sing 104 n n NB C1B COH sing 105 n n NB C4B COH sing 106 n n C1B C2B COH sing 107 n n C2B C3B COH doub 108 n n C2B CMB COH sing 109 n n C3B C4B COH sing 110 n n C3B CAB COH sing 111 n n CMB HMB1 COH sing 112 n n CMB HMB2 COH sing 113 n n CMB HMB3 COH sing 114 n n CAB CBB COH doub 115 n n CAB HAB COH sing 116 n n CBB HBB1 COH sing 117 n n CBB HBB2 COH sing 118 n n NC C1C COH doub 119 n n NC C4C COH sing 120 n n C1C C2C COH sing 121 n n C2C C3C COH doub 122 n n C2C CMC COH sing 123 n n C3C C4C COH sing 124 n n C3C CAC COH sing 125 n n CMC HMC1 COH sing 126 n n CMC HMC2 COH sing 127 n n CMC HMC3 COH sing 128 n n CAC CBC COH doub 129 n n CAC HAC COH sing 130 n n CBC HBC1 COH sing 131 n n CBC HBC2 COH sing 132 n n ND C1D COH sing 133 n y ND C4D COH sing 134 n y C1D C2D COH doub 135 n y C2D C3D COH sing 136 n y C2D CMD COH sing 137 n n C3D C4D COH doub 138 n y C3D CAD COH sing 139 n n CMD HMD1 COH sing 140 n n CMD HMD2 COH sing 141 n n CMD HMD3 COH sing 142 n n CAD CBD COH sing 143 n n CAD HAD1 COH sing 144 n n CAD HAD2 COH sing 145 n n CBD CGD COH sing 146 n n CBD HBD1 COH sing 147 n n CBD HBD2 COH sing 148 n n CGD O1D COH doub 149 n n CGD O2D COH sing 150 n n O2D H2D COH sing 151 n n # _atom_sites.entry_id 1YOH _atom_sites.fract_transf_matrix[1][1] 0.015497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 199 199 SO4 SO4 . C 2 SO4 A 1 200 200 SO4 SO4 . D 3 COH A 1 154 154 COH COH . E 4 HOH A 1 155 155 HOH MTO . E 4 HOH A 2 201 201 HOH HOH . E 4 HOH A 3 202 202 HOH HOH . E 4 HOH A 4 203 203 HOH HOH . E 4 HOH A 5 204 204 HOH HOH . E 4 HOH A 6 205 205 HOH HOH . E 4 HOH A 7 206 206 HOH HOH . E 4 HOH A 8 207 207 HOH HOH . E 4 HOH A 9 208 208 HOH HOH . E 4 HOH A 10 209 209 HOH HOH . E 4 HOH A 11 210 210 HOH HOH . E 4 HOH A 12 211 211 HOH HOH . E 4 HOH A 13 212 212 HOH HOH . E 4 HOH A 14 213 213 HOH HOH . E 4 HOH A 15 214 214 HOH HOH . E 4 HOH A 16 215 215 HOH HOH . E 4 HOH A 17 216 216 HOH HOH . E 4 HOH A 18 217 217 HOH HOH . E 4 HOH A 19 218 218 HOH HOH . E 4 HOH A 20 219 219 HOH HOH . E 4 HOH A 21 220 220 HOH HOH . E 4 HOH A 22 221 221 HOH HOH . E 4 HOH A 23 222 222 HOH HOH . E 4 HOH A 24 223 223 HOH HOH . E 4 HOH A 25 224 224 HOH HOH . E 4 HOH A 26 225 225 HOH HOH . E 4 HOH A 27 226 226 HOH HOH . E 4 HOH A 28 227 227 HOH HOH . E 4 HOH A 29 228 228 HOH HOH . E 4 HOH A 30 229 229 HOH HOH . E 4 HOH A 31 230 230 HOH HOH . E 4 HOH A 32 231 231 HOH HOH . E 4 HOH A 33 232 232 HOH HOH . E 4 HOH A 34 233 233 HOH HOH . E 4 HOH A 35 234 234 HOH HOH . E 4 HOH A 36 235 235 HOH HOH . E 4 HOH A 37 236 236 HOH HOH . E 4 HOH A 38 237 237 HOH HOH . E 4 HOH A 39 238 238 HOH HOH . E 4 HOH A 40 239 239 HOH HOH . E 4 HOH A 41 240 240 HOH HOH . E 4 HOH A 42 241 241 HOH HOH . E 4 HOH A 43 242 242 HOH HOH . E 4 HOH A 44 243 243 HOH HOH . E 4 HOH A 45 244 244 HOH HOH . E 4 HOH A 46 245 245 HOH HOH . E 4 HOH A 47 246 246 HOH HOH . E 4 HOH A 48 247 247 HOH HOH . E 4 HOH A 49 248 248 HOH HOH . E 4 HOH A 50 249 249 HOH HOH . E 4 HOH A 51 250 250 HOH HOH . E 4 HOH A 52 251 251 HOH HOH . E 4 HOH A 53 252 252 HOH HOH . E 4 HOH A 54 253 253 HOH HOH . E 4 HOH A 55 254 254 HOH HOH . E 4 HOH A 56 255 255 HOH HOH . E 4 HOH A 57 256 256 HOH HOH . E 4 HOH A 58 257 257 HOH HOH . E 4 HOH A 59 258 258 HOH HOH . E 4 HOH A 60 259 259 HOH HOH . E 4 HOH A 61 261 261 HOH HOH . E 4 HOH A 62 262 262 HOH HOH . E 4 HOH A 63 263 263 HOH HOH . E 4 HOH A 64 264 264 HOH HOH . E 4 HOH A 65 265 265 HOH HOH . E 4 HOH A 66 266 266 HOH HOH . E 4 HOH A 67 267 267 HOH HOH . E 4 HOH A 68 268 268 HOH HOH . E 4 HOH A 69 269 269 HOH HOH . E 4 HOH A 70 270 270 HOH HOH . E 4 HOH A 71 271 271 HOH HOH . E 4 HOH A 72 272 272 HOH HOH . E 4 HOH A 73 273 273 HOH HOH . E 4 HOH A 74 274 274 HOH HOH . E 4 HOH A 75 275 275 HOH HOH . E 4 HOH A 76 276 276 HOH HOH . E 4 HOH A 77 277 277 HOH HOH . E 4 HOH A 78 278 278 HOH HOH . E 4 HOH A 79 279 279 HOH HOH . E 4 HOH A 80 280 280 HOH HOH . E 4 HOH A 81 281 281 HOH HOH . E 4 HOH A 82 282 282 HOH HOH . E 4 HOH A 83 283 283 HOH HOH . E 4 HOH A 84 284 284 HOH HOH . E 4 HOH A 85 285 285 HOH HOH . E 4 HOH A 86 286 286 HOH HOH . E 4 HOH A 87 287 287 HOH HOH . E 4 HOH A 88 288 288 HOH HOH . E 4 HOH A 89 289 289 HOH HOH . E 4 HOH A 90 290 290 HOH HOH . E 4 HOH A 91 291 291 HOH HOH . E 4 HOH A 92 292 292 HOH HOH . E 4 HOH A 93 293 293 HOH HOH . E 4 HOH A 94 294 294 HOH HOH . E 4 HOH A 95 295 295 HOH HOH . E 4 HOH A 96 296 296 HOH HOH . E 4 HOH A 97 297 297 HOH HOH . E 4 HOH A 98 298 298 HOH HOH . E 4 HOH A 99 299 299 HOH HOH . E 4 HOH A 100 300 300 HOH HOH . E 4 HOH A 101 301 301 HOH HOH . E 4 HOH A 102 302 302 HOH HOH . E 4 HOH A 103 303 303 HOH HOH . E 4 HOH A 104 304 304 HOH HOH . E 4 HOH A 105 305 305 HOH HOH . E 4 HOH A 106 306 306 HOH HOH . E 4 HOH A 107 307 307 HOH HOH . E 4 HOH A 108 308 308 HOH HOH . E 4 HOH A 109 309 309 HOH HOH . E 4 HOH A 110 310 310 HOH HOH . E 4 HOH A 111 311 311 HOH HOH . E 4 HOH A 112 312 312 HOH HOH . E 4 HOH A 113 313 313 HOH HOH . E 4 HOH A 114 314 314 HOH HOH . E 4 HOH A 115 315 315 HOH HOH . E 4 HOH A 116 316 316 HOH HOH . E 4 HOH A 117 317 317 HOH HOH . E 4 HOH A 118 318 318 HOH HOH . E 4 HOH A 119 319 319 HOH HOH . E 4 HOH A 120 320 320 HOH HOH . E 4 HOH A 121 321 321 HOH HOH . E 4 HOH A 122 322 322 HOH HOH . E 4 HOH A 123 323 323 HOH HOH . E 4 HOH A 124 324 324 HOH HOH . E 4 HOH A 125 325 325 HOH HOH . E 4 HOH A 126 326 326 HOH HOH . E 4 HOH A 127 327 327 HOH HOH . E 4 HOH A 128 328 328 HOH HOH . E 4 HOH A 129 329 329 HOH HOH . E 4 HOH A 130 330 330 HOH HOH . E 4 HOH A 131 331 331 HOH HOH . E 4 HOH A 132 332 332 HOH HOH . E 4 HOH A 133 333 333 HOH HOH . E 4 HOH A 134 334 334 HOH HOH . E 4 HOH A 135 335 335 HOH HOH . E 4 HOH A 136 336 336 HOH HOH . E 4 HOH A 137 337 337 HOH HOH . E 4 HOH A 138 338 338 HOH HOH . E 4 HOH A 139 339 339 HOH HOH . E 4 HOH A 140 340 340 HOH HOH . E 4 HOH A 141 341 341 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . D 3 14.743 27.977 4.706 1 14.5 ? CO COH 154 A 1 HETATM 2 C CHA COH . . . D 3 16.153 31.063 5.019 1 8.3 ? CHA COH 154 A 1 HETATM 3 C CHB COH . . . D 3 14.073 27.887 8.002 1 8.9 ? CHB COH 154 A 1 HETATM 4 C CHC COH . . . D 3 13.426 24.969 4.367 1 10.7 ? CHC COH 154 A 1 HETATM 5 C CHD COH . . . D 3 15.578 27.873 1.43 1 8.9 ? CHD COH 154 A 1 HETATM 6 N NA COH . . . D 3 14.98 29.117 6.156 1 9.1 ? NA COH 154 A 1 HETATM 7 C C1A COH . . . D 3 15.608 30.425 6.128 1 9.3 ? C1A COH 154 A 1 HETATM 8 C C2A COH . . . D 3 15.619 31.12 7.498 1 11.4 ? C2A COH 154 A 1 HETATM 9 C C3A COH . . . D 3 15.048 30.179 8.339 1 10.7 ? C3A COH 154 A 1 HETATM 10 C C4A COH . . . D 3 14.661 29.031 7.509 1 9.5 ? C4A COH 154 A 1 HETATM 11 C CMA COH . . . D 3 14.703 30.306 9.796 1 9.4 ? CMA COH 154 A 1 HETATM 12 C CAA COH . . . D 3 16.051 32.587 7.766 1 13.6 ? CAA COH 154 A 1 HETATM 13 C CBA COH . . . D 3 14.884 33.569 7.932 1 17.4 ? CBA COH 154 A 1 HETATM 14 C CGA COH . . . D 3 13.965 33.507 6.716 1 19.7 ? CGA COH 154 A 1 HETATM 15 O O1A COH . . . D 3 14.383 33.969 5.646 1 20.6 ? O1A COH 154 A 1 HETATM 16 O O2A COH . . . D 3 12.863 32.894 6.806 1 22.2 ? O2A COH 154 A 1 HETATM 17 N NB COH . . . D 3 13.908 26.677 5.854 1 9.7 ? NB COH 154 A 1 HETATM 18 C C1B COH . . . D 3 13.685 26.792 7.228 1 7.9 ? C1B COH 154 A 1 HETATM 19 C C2B COH . . . D 3 13.085 25.659 7.86 1 9.1 ? C2B COH 154 A 1 HETATM 20 C C3B COH . . . D 3 12.892 24.823 6.859 1 10.5 ? C3B COH 154 A 1 HETATM 21 C C4B COH . . . D 3 13.408 25.483 5.627 1 10.5 ? C4B COH 154 A 1 HETATM 22 C CMB COH . . . D 3 12.694 25.546 9.426 1 8.7 ? CMB COH 154 A 1 HETATM 23 C CAB COH . . . D 3 12.22 23.538 6.943 1 11.6 ? CAB COH 154 A 1 HETATM 24 C CBB COH . . . D 3 12.525 22.463 7.845 1 13.5 ? CBB COH 154 A 1 HETATM 25 N NC COH . . . D 3 14.533 26.673 3.129 1 10.7 ? NC COH 154 A 1 HETATM 26 C C1C COH . . . D 3 14.023 25.436 3.234 1 10.2 ? C1C COH 154 A 1 HETATM 27 C C2C COH . . . D 3 14.227 24.673 2.046 1 10.7 ? C2C COH 154 A 1 HETATM 28 C C3C COH . . . D 3 14.863 25.542 1.164 1 10.7 ? C3C COH 154 A 1 HETATM 29 C C4C COH . . . D 3 14.977 26.762 1.877 1 9.2 ? C4C COH 154 A 1 HETATM 30 C CMC COH . . . D 3 13.621 23.328 1.823 1 12 ? CMC COH 154 A 1 HETATM 31 C CAC COH . . . D 3 15.445 25.319 -0.149 1 12.1 ? CAC COH 154 A 1 HETATM 32 C CBC COH . . . D 3 15.359 24.096 -0.893 1 14 ? CBC COH 154 A 1 HETATM 33 N ND COH . . . D 3 15.683 29.169 3.436 1 9.9 ? ND COH 154 A 1 HETATM 34 C C1D COH . . . D 3 15.896 29.012 2.142 1 11.2 ? C1D COH 154 A 1 HETATM 35 C C2D COH . . . D 3 16.633 30.193 1.548 1 12.1 ? C2D COH 154 A 1 HETATM 36 C C3D COH . . . D 3 16.856 31.014 2.595 1 12.5 ? C3D COH 154 A 1 HETATM 37 C C4D COH . . . D 3 16.25 30.435 3.75 1 10.9 ? C4D COH 154 A 1 HETATM 38 C CMD COH . . . D 3 17.112 30.289 0.12 1 12.4 ? CMD COH 154 A 1 HETATM 39 C CAD COH . . . D 3 17.686 32.254 2.586 1 15.3 ? CAD COH 154 A 1 HETATM 40 C CBD COH . . . D 3 19.13 31.862 2.851 1 15.7 ? CBD COH 154 A 1 HETATM 41 C CGD COH . . . D 3 20.035 33.061 2.836 1 16.5 ? CGD COH 154 A 1 HETATM 42 O O1D COH . . . D 3 20.313 33.6 1.76 1 18.3 ? O1D COH 154 A 1 HETATM 43 O O2D COH . . . D 3 20.424 33.524 3.899 1 17.7 ? O2D COH 154 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #