data_1YOI # _model_server_result.job_id sMegkUVLtG6EqmAVLhNHew _model_server_result.datetime_utc '2024-11-15 12:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yoi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 1YOI # _exptl.entry_id 1YOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.75 _cell.angle_gamma 90 _cell.entry_id 1YOI _cell.length_a 64.68 _cell.length_b 30.92 _cell.length_c 34.91 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C CO COH . A COH 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 C CO COH . A COH 154 1_555 D O1 OXY . A OXY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 C CO COH . A COH 154 1_555 D O2 OXY . A OXY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 70 n n CO NB COH sing 71 n n CO NC COH sing 72 n n CO ND COH sing 73 n n CHA C1A COH doub 74 n n CHA C4D COH sing 75 n n CHA HHA COH sing 76 n n CHB C4A COH sing 77 n n CHB C1B COH doub 78 n n CHB HHB COH sing 79 n n CHC C4B COH doub 80 n n CHC C1C COH sing 81 n n CHC HHC COH sing 82 n n CHD C4C COH doub 83 n n CHD C1D COH sing 84 n n CHD HHD COH sing 85 n n NA C1A COH sing 86 n n NA C4A COH doub 87 n n C1A C2A COH sing 88 n n C2A C3A COH doub 89 n n C2A CAA COH sing 90 n n C3A C4A COH sing 91 n n C3A CMA COH sing 92 n n CMA HMA1 COH sing 93 n n CMA HMA2 COH sing 94 n n CMA HMA3 COH sing 95 n n CAA CBA COH sing 96 n n CAA HAA1 COH sing 97 n n CAA HAA2 COH sing 98 n n CBA CGA COH sing 99 n n CBA HBA1 COH sing 100 n n CBA HBA2 COH sing 101 n n CGA O1A COH doub 102 n n CGA O2A COH sing 103 n n O2A H2A COH sing 104 n n NB C1B COH sing 105 n n NB C4B COH sing 106 n n C1B C2B COH sing 107 n n C2B C3B COH doub 108 n n C2B CMB COH sing 109 n n C3B C4B COH sing 110 n n C3B CAB COH sing 111 n n CMB HMB1 COH sing 112 n n CMB HMB2 COH sing 113 n n CMB HMB3 COH sing 114 n n CAB CBB COH doub 115 n n CAB HAB COH sing 116 n n CBB HBB1 COH sing 117 n n CBB HBB2 COH sing 118 n n NC C1C COH doub 119 n n NC C4C COH sing 120 n n C1C C2C COH sing 121 n n C2C C3C COH doub 122 n n C2C CMC COH sing 123 n n C3C C4C COH sing 124 n n C3C CAC COH sing 125 n n CMC HMC1 COH sing 126 n n CMC HMC2 COH sing 127 n n CMC HMC3 COH sing 128 n n CAC CBC COH doub 129 n n CAC HAC COH sing 130 n n CBC HBC1 COH sing 131 n n CBC HBC2 COH sing 132 n n ND C1D COH sing 133 n y ND C4D COH sing 134 n y C1D C2D COH doub 135 n y C2D C3D COH sing 136 n y C2D CMD COH sing 137 n n C3D C4D COH doub 138 n y C3D CAD COH sing 139 n n CMD HMD1 COH sing 140 n n CMD HMD2 COH sing 141 n n CMD HMD3 COH sing 142 n n CAD CBD COH sing 143 n n CAD HAD1 COH sing 144 n n CAD HAD2 COH sing 145 n n CBD CGD COH sing 146 n n CBD HBD1 COH sing 147 n n CBD HBD2 COH sing 148 n n CGD O1D COH doub 149 n n CGD O2D COH sing 150 n n O2D H2D COH sing 151 n n # _atom_sites.entry_id 1YOI _atom_sites.fract_transf_matrix[1][1] 0.015461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 200 200 SO4 SO4 . C 3 COH A 1 154 154 COH COH . D 4 OXY A 1 155 155 OXY OXY . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . E 5 HOH A 36 236 236 HOH HOH . E 5 HOH A 37 237 237 HOH HOH . E 5 HOH A 38 238 238 HOH HOH . E 5 HOH A 39 239 239 HOH HOH . E 5 HOH A 40 240 240 HOH HOH . E 5 HOH A 41 241 241 HOH HOH . E 5 HOH A 42 242 242 HOH HOH . E 5 HOH A 43 243 243 HOH HOH . E 5 HOH A 44 244 244 HOH HOH . E 5 HOH A 45 245 245 HOH HOH . E 5 HOH A 46 246 246 HOH HOH . E 5 HOH A 47 247 247 HOH HOH . E 5 HOH A 48 248 248 HOH HOH . E 5 HOH A 49 249 249 HOH HOH . E 5 HOH A 50 250 250 HOH HOH . E 5 HOH A 51 251 251 HOH HOH . E 5 HOH A 52 252 252 HOH HOH . E 5 HOH A 53 253 253 HOH HOH . E 5 HOH A 54 254 254 HOH HOH . E 5 HOH A 55 255 255 HOH HOH . E 5 HOH A 56 256 256 HOH HOH . E 5 HOH A 57 257 257 HOH HOH . E 5 HOH A 58 258 258 HOH HOH . E 5 HOH A 59 259 259 HOH HOH . E 5 HOH A 60 260 260 HOH HOH . E 5 HOH A 61 261 261 HOH HOH . E 5 HOH A 62 262 262 HOH HOH . E 5 HOH A 63 263 263 HOH HOH . E 5 HOH A 64 264 264 HOH HOH . E 5 HOH A 65 265 265 HOH HOH . E 5 HOH A 66 266 266 HOH HOH . E 5 HOH A 67 267 267 HOH HOH . E 5 HOH A 68 268 268 HOH HOH . E 5 HOH A 69 269 269 HOH HOH . E 5 HOH A 70 270 270 HOH HOH . E 5 HOH A 71 271 271 HOH HOH . E 5 HOH A 72 272 272 HOH HOH . E 5 HOH A 73 273 273 HOH HOH . E 5 HOH A 74 274 274 HOH HOH . E 5 HOH A 75 275 275 HOH HOH . E 5 HOH A 76 276 276 HOH HOH . E 5 HOH A 77 277 277 HOH HOH . E 5 HOH A 78 278 278 HOH HOH . E 5 HOH A 79 279 279 HOH HOH . E 5 HOH A 80 280 280 HOH HOH . E 5 HOH A 81 281 281 HOH HOH . E 5 HOH A 82 282 282 HOH HOH . E 5 HOH A 83 283 283 HOH HOH . E 5 HOH A 84 284 284 HOH HOH . E 5 HOH A 85 285 285 HOH HOH . E 5 HOH A 86 286 286 HOH HOH . E 5 HOH A 87 287 287 HOH HOH . E 5 HOH A 88 288 288 HOH HOH . E 5 HOH A 89 289 289 HOH HOH . E 5 HOH A 90 290 290 HOH HOH . E 5 HOH A 91 291 291 HOH HOH . E 5 HOH A 92 292 292 HOH HOH . E 5 HOH A 93 293 293 HOH HOH . E 5 HOH A 94 294 294 HOH HOH . E 5 HOH A 95 295 295 HOH HOH . E 5 HOH A 96 296 296 HOH HOH . E 5 HOH A 97 297 297 HOH HOH . E 5 HOH A 98 298 298 HOH HOH . E 5 HOH A 99 299 299 HOH HOH . E 5 HOH A 100 300 300 HOH HOH . E 5 HOH A 101 301 301 HOH HOH . E 5 HOH A 102 302 302 HOH HOH . E 5 HOH A 103 303 303 HOH HOH . E 5 HOH A 104 304 304 HOH HOH . E 5 HOH A 105 305 305 HOH HOH . E 5 HOH A 106 306 306 HOH HOH . E 5 HOH A 107 307 307 HOH HOH . E 5 HOH A 108 308 308 HOH HOH . E 5 HOH A 109 309 309 HOH HOH . E 5 HOH A 110 310 310 HOH HOH . E 5 HOH A 111 311 311 HOH HOH . E 5 HOH A 112 312 312 HOH HOH . E 5 HOH A 113 313 313 HOH HOH . E 5 HOH A 114 314 314 HOH HOH . E 5 HOH A 115 315 315 HOH HOH . E 5 HOH A 116 316 316 HOH HOH . E 5 HOH A 117 317 317 HOH HOH . E 5 HOH A 118 318 318 HOH HOH . E 5 HOH A 119 319 319 HOH HOH . E 5 HOH A 120 320 320 HOH HOH . E 5 HOH A 121 321 321 HOH HOH . E 5 HOH A 122 322 322 HOH HOH . E 5 HOH A 123 323 323 HOH HOH . E 5 HOH A 124 324 324 HOH HOH . E 5 HOH A 125 325 325 HOH HOH . E 5 HOH A 126 326 326 HOH HOH . E 5 HOH A 127 327 327 HOH HOH . E 5 HOH A 128 328 328 HOH HOH . E 5 HOH A 129 329 329 HOH HOH . E 5 HOH A 130 330 330 HOH HOH . E 5 HOH A 131 331 331 HOH HOH . E 5 HOH A 132 332 332 HOH HOH . E 5 HOH A 133 333 333 HOH HOH . E 5 HOH A 134 334 334 HOH HOH . E 5 HOH A 135 335 335 HOH HOH . E 5 HOH A 136 336 336 HOH HOH . E 5 HOH A 137 337 337 HOH HOH . E 5 HOH A 138 338 338 HOH HOH . E 5 HOH A 139 339 339 HOH HOH . E 5 HOH A 140 340 340 HOH HOH . E 5 HOH A 141 341 341 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . C 3 14.716 27.893 4.8 1 14.8 ? CO COH 154 A 1 HETATM 2 C CHA COH . . . C 3 16.141 31.057 5.038 1 10.7 ? CHA COH 154 A 1 HETATM 3 C CHB COH . . . C 3 14.022 27.947 8.087 1 8.6 ? CHB COH 154 A 1 HETATM 4 C CHC COH . . . C 3 13.449 24.905 4.46 1 11.7 ? CHC COH 154 A 1 HETATM 5 C CHD COH . . . C 3 15.548 27.823 1.503 1 11.5 ? CHD COH 154 A 1 HETATM 6 N NA COH . . . C 3 14.993 29.177 6.201 1 10.2 ? NA COH 154 A 1 HETATM 7 C C1A COH . . . C 3 15.607 30.473 6.196 1 11.4 ? C1A COH 154 A 1 HETATM 8 C C2A COH . . . C 3 15.551 31.116 7.528 1 12.1 ? C2A COH 154 A 1 HETATM 9 C C3A COH . . . C 3 14.976 30.213 8.362 1 11.4 ? C3A COH 154 A 1 HETATM 10 C C4A COH . . . C 3 14.616 29.055 7.548 1 9.7 ? C4A COH 154 A 1 HETATM 11 C CMA COH . . . C 3 14.579 30.343 9.818 1 11.1 ? CMA COH 154 A 1 HETATM 12 C CAA COH . . . C 3 16.043 32.519 7.781 1 15.2 ? CAA COH 154 A 1 HETATM 13 C CBA COH . . . C 3 14.97 33.577 7.939 1 19.7 ? CBA COH 154 A 1 HETATM 14 C CGA COH . . . C 3 14.006 33.577 6.769 1 22.3 ? CGA COH 154 A 1 HETATM 15 O O1A COH . . . C 3 14.419 33.97 5.659 1 22.8 ? O1A COH 154 A 1 HETATM 16 O O2A COH . . . C 3 12.849 33.124 6.95 1 26 ? O2A COH 154 A 1 HETATM 17 N NB COH . . . C 3 13.852 26.694 5.983 1 9.5 ? NB COH 154 A 1 HETATM 18 C C1B COH . . . C 3 13.635 26.804 7.324 1 10.2 ? C1B COH 154 A 1 HETATM 19 C C2B COH . . . C 3 13.116 25.633 7.939 1 10.9 ? C2B COH 154 A 1 HETATM 20 C C3B COH . . . C 3 12.951 24.782 6.877 1 12.1 ? C3B COH 154 A 1 HETATM 21 C C4B COH . . . C 3 13.424 25.479 5.688 1 11 ? C4B COH 154 A 1 HETATM 22 C CMB COH . . . C 3 12.688 25.566 9.444 1 10.4 ? CMB COH 154 A 1 HETATM 23 C CAB COH . . . C 3 12.313 23.509 6.89 1 11.5 ? CAB COH 154 A 1 HETATM 24 C CBB COH . . . C 3 12.514 22.581 7.898 1 12.9 ? CBB COH 154 A 1 HETATM 25 N NC COH . . . C 3 14.545 26.592 3.264 1 10.6 ? NC COH 154 A 1 HETATM 26 C C1C COH . . . C 3 14.034 25.366 3.319 1 11.5 ? C1C COH 154 A 1 HETATM 27 C C2C COH . . . C 3 14.222 24.632 2.088 1 11.1 ? C2C COH 154 A 1 HETATM 28 C C3C COH . . . C 3 14.865 25.54 1.209 1 11 ? C3C COH 154 A 1 HETATM 29 C C4C COH . . . C 3 14.95 26.723 1.975 1 9.6 ? C4C COH 154 A 1 HETATM 30 C CMC COH . . . C 3 13.663 23.228 1.921 1 13.2 ? CMC COH 154 A 1 HETATM 31 C CAC COH . . . C 3 15.473 25.357 -0.084 1 12.2 ? CAC COH 154 A 1 HETATM 32 C CBC COH . . . C 3 15.37 24.078 -0.705 1 13.6 ? CBC COH 154 A 1 HETATM 33 N ND COH . . . C 3 15.697 29.174 3.468 1 12.3 ? ND COH 154 A 1 HETATM 34 C C1D COH . . . C 3 15.973 28.988 2.232 1 11.9 ? C1D COH 154 A 1 HETATM 35 C C2D COH . . . C 3 16.714 30.158 1.628 1 13.2 ? C2D COH 154 A 1 HETATM 36 C C3D COH . . . C 3 16.881 31.029 2.661 1 13.7 ? C3D COH 154 A 1 HETATM 37 C C4D COH . . . C 3 16.239 30.442 3.818 1 11.9 ? C4D COH 154 A 1 HETATM 38 C CMD COH . . . C 3 17.141 30.258 0.144 1 12.3 ? CMD COH 154 A 1 HETATM 39 C CAD COH . . . C 3 17.709 32.281 2.635 1 15.2 ? CAD COH 154 A 1 HETATM 40 C CBD COH . . . C 3 19.157 31.883 2.82 1 17.5 ? CBD COH 154 A 1 HETATM 41 C CGD COH . . . C 3 20.081 33.09 2.85 1 19.3 ? CGD COH 154 A 1 HETATM 42 O O1D COH . . . C 3 20.457 33.594 1.777 1 22.9 ? O1D COH 154 A 1 HETATM 43 O O2D COH . . . C 3 20.413 33.566 3.939 1 21.4 ? O2D COH 154 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #