data_1YOM # _model_server_result.job_id f-NWDrLzeWFoOP10GlcZEA _model_server_result.datetime_utc '2024-10-11 02:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 1YOM # _exptl.entry_id 1YOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.894 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({6-[(3-CHLOROPHENYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)-3-METHYLBUTAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.61 _cell.angle_beta 88.86 _cell.angle_gamma 89.89 _cell.entry_id 1YOM _cell.length_a 41.698 _cell.length_b 63.078 _cell.length_c 74.055 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H25 Cl N6 O' _chem_comp.formula_weight 388.894 _chem_comp.id P01 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({6-[(3-CHLOROPHENYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)-3-METHYLBUTAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PURVALANOL A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C5A P01 sing 237 n n C5A C6A P01 doub 238 n y C5A C4A P01 sing 239 n y C6A C1A P01 sing 240 n y C6A H6A P01 sing 241 n n C1A C2A P01 doub 242 n y C1A N6 P01 sing 243 n n C2A C3A P01 sing 244 n y C2A H2A P01 sing 245 n n C3A C4A P01 doub 246 n y C3A H3A P01 sing 247 n n C4A H4A P01 sing 248 n n N6 C6 P01 sing 249 n n N6 HN6 P01 sing 250 n n C6 C5 P01 doub 251 n y C6 N1 P01 sing 252 n y C5 N7 P01 sing 253 n y C5 C4 P01 sing 254 n y N7 C8 P01 doub 255 n y C4 N9 P01 sing 256 n y C4 N3 P01 doub 257 n y N9 C10 P01 sing 258 n n N9 C8 P01 sing 259 n y C10 C11 P01 sing 260 n n C10 C12 P01 sing 261 n n C10 H10 P01 sing 262 n n C11 H111 P01 sing 263 n n C11 H112 P01 sing 264 n n C11 H113 P01 sing 265 n n C12 H121 P01 sing 266 n n C12 H122 P01 sing 267 n n C12 H123 P01 sing 268 n n C8 H8 P01 sing 269 n n N3 C2 P01 sing 270 n y C2 N1 P01 doub 271 n y C2 N21 P01 sing 272 n n N21 C22 P01 sing 273 n n N21 H21 P01 sing 274 n n C22 C25 P01 sing 275 n n C22 C23 P01 sing 276 n n C22 H22 P01 sing 277 n n C25 C26 P01 sing 278 n n C25 C27 P01 sing 279 n n C25 H25 P01 sing 280 n n C26 H261 P01 sing 281 n n C26 H262 P01 sing 282 n n C26 H263 P01 sing 283 n n C27 H271 P01 sing 284 n n C27 H272 P01 sing 285 n n C27 H273 P01 sing 286 n n C23 O24 P01 sing 287 n n C23 H231 P01 sing 288 n n C23 H232 P01 sing 289 n n O24 H24 P01 sing 290 n n # _atom_sites.entry_id 1YOM _atom_sites.fract_transf_matrix[1][1] 0.023982 _atom_sites.fract_transf_matrix[1][2] -0.000046 _atom_sites.fract_transf_matrix[1][3] -0.000496 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015853 _atom_sites.fract_transf_matrix[2][3] 0.002971 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P01 A 1 1 1 P01 P01 . D 2 P01 B 1 2 2 P01 P01 . E 3 HOH A 1 536 5 HOH HOH . E 3 HOH A 2 537 6 HOH HOH . E 3 HOH A 3 538 13 HOH HOH . E 3 HOH A 4 539 18 HOH HOH . E 3 HOH A 5 540 20 HOH HOH . E 3 HOH A 6 541 21 HOH HOH . E 3 HOH A 7 542 22 HOH HOH . E 3 HOH A 8 543 24 HOH HOH . E 3 HOH A 9 544 31 HOH HOH . E 3 HOH A 10 545 40 HOH HOH . E 3 HOH A 11 546 42 HOH HOH . E 3 HOH A 12 547 50 HOH HOH . E 3 HOH A 13 548 58 HOH HOH . E 3 HOH A 14 549 65 HOH HOH . E 3 HOH A 15 550 72 HOH HOH . E 3 HOH A 16 551 73 HOH HOH . E 3 HOH A 17 552 76 HOH HOH . E 3 HOH A 18 553 82 HOH HOH . E 3 HOH A 19 554 85 HOH HOH . E 3 HOH A 20 555 104 HOH HOH . E 3 HOH A 21 556 106 HOH HOH . E 3 HOH A 22 557 114 HOH HOH . E 3 HOH A 23 558 118 HOH HOH . E 3 HOH A 24 559 121 HOH HOH . E 3 HOH A 25 560 122 HOH HOH . E 3 HOH A 26 561 125 HOH HOH . E 3 HOH A 27 562 132 HOH HOH . E 3 HOH A 28 563 145 HOH HOH . E 3 HOH A 29 564 150 HOH HOH . E 3 HOH A 30 565 158 HOH HOH . E 3 HOH A 31 566 171 HOH HOH . E 3 HOH A 32 567 175 HOH HOH . E 3 HOH A 33 568 176 HOH HOH . E 3 HOH A 34 569 179 HOH HOH . E 3 HOH A 35 570 188 HOH HOH . E 3 HOH A 36 571 194 HOH HOH . E 3 HOH A 37 572 195 HOH HOH . E 3 HOH A 38 573 203 HOH HOH . E 3 HOH A 39 574 205 HOH HOH . E 3 HOH A 40 575 211 HOH HOH . E 3 HOH A 41 576 212 HOH HOH . E 3 HOH A 42 577 224 HOH HOH . E 3 HOH A 43 578 226 HOH HOH . E 3 HOH A 44 579 232 HOH HOH . E 3 HOH A 45 580 240 HOH HOH . E 3 HOH A 46 581 242 HOH HOH . E 3 HOH A 47 582 244 HOH HOH . E 3 HOH A 48 583 307 HOH HOH . E 3 HOH A 49 584 323 HOH HOH . E 3 HOH A 50 585 330 HOH HOH . E 3 HOH A 51 586 356 HOH HOH . E 3 HOH A 52 587 379 HOH HOH . E 3 HOH A 53 588 380 HOH HOH . E 3 HOH A 54 589 388 HOH HOH . E 3 HOH A 55 590 473 HOH HOH . E 3 HOH A 56 591 480 HOH HOH . E 3 HOH A 57 592 485 HOH HOH . E 3 HOH A 58 593 489 HOH HOH . E 3 HOH A 59 594 508 HOH HOH . F 3 HOH B 1 536 84 HOH HOH . F 3 HOH B 2 537 91 HOH HOH . F 3 HOH B 3 538 92 HOH HOH . F 3 HOH B 4 539 116 HOH HOH . F 3 HOH B 5 540 123 HOH HOH . F 3 HOH B 6 541 144 HOH HOH . F 3 HOH B 7 542 155 HOH HOH . F 3 HOH B 8 543 184 HOH HOH . F 3 HOH B 9 544 191 HOH HOH . F 3 HOH B 10 545 210 HOH HOH . F 3 HOH B 11 546 228 HOH HOH . F 3 HOH B 12 547 302 HOH HOH . F 3 HOH B 13 548 304 HOH HOH . F 3 HOH B 14 549 309 HOH HOH . F 3 HOH B 15 550 310 HOH HOH . F 3 HOH B 16 551 314 HOH HOH . F 3 HOH B 17 552 317 HOH HOH . F 3 HOH B 18 553 326 HOH HOH . F 3 HOH B 19 554 332 HOH HOH . F 3 HOH B 20 555 336 HOH HOH . F 3 HOH B 21 556 341 HOH HOH . F 3 HOH B 22 557 343 HOH HOH . F 3 HOH B 23 558 347 HOH HOH . F 3 HOH B 24 559 348 HOH HOH . F 3 HOH B 25 560 349 HOH HOH . F 3 HOH B 26 561 355 HOH HOH . F 3 HOH B 27 562 360 HOH HOH . F 3 HOH B 28 563 368 HOH HOH . F 3 HOH B 29 564 371 HOH HOH . F 3 HOH B 30 565 374 HOH HOH . F 3 HOH B 31 566 375 HOH HOH . F 3 HOH B 32 567 381 HOH HOH . F 3 HOH B 33 568 387 HOH HOH . F 3 HOH B 34 569 395 HOH HOH . F 3 HOH B 35 570 409 HOH HOH . F 3 HOH B 36 571 410 HOH HOH . F 3 HOH B 37 572 413 HOH HOH . F 3 HOH B 38 573 419 HOH HOH . F 3 HOH B 39 574 420 HOH HOH . F 3 HOH B 40 575 424 HOH HOH . F 3 HOH B 41 576 426 HOH HOH . F 3 HOH B 42 577 437 HOH HOH . F 3 HOH B 43 578 439 HOH HOH . F 3 HOH B 44 579 440 HOH HOH . F 3 HOH B 45 580 454 HOH HOH . F 3 HOH B 46 581 464 HOH HOH . F 3 HOH B 47 582 466 HOH HOH . F 3 HOH B 48 583 472 HOH HOH . F 3 HOH B 49 584 477 HOH HOH . F 3 HOH B 50 585 478 HOH HOH . F 3 HOH B 51 586 482 HOH HOH . F 3 HOH B 52 587 483 HOH HOH . F 3 HOH B 53 588 487 HOH HOH . F 3 HOH B 54 589 492 HOH HOH . F 3 HOH B 55 590 493 HOH HOH . F 3 HOH B 56 591 497 HOH HOH . F 3 HOH B 57 592 500 HOH HOH . F 3 HOH B 58 593 506 HOH HOH . F 3 HOH B 59 594 507 HOH HOH . F 3 HOH B 60 595 513 HOH HOH . F 3 HOH B 61 596 516 HOH HOH . F 3 HOH B 62 597 517 HOH HOH . F 3 HOH B 63 598 518 HOH HOH . F 3 HOH B 64 599 520 HOH HOH . F 3 HOH B 65 600 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 P01 . . . D 2 -0.653 20.207 28.218 1 56.04 ? CL1 P01 2 B 1 HETATM 2 C C5A P01 . . . D 2 -1.378 21.736 28.747 1 53.63 ? C5A P01 2 B 1 HETATM 3 C C6A P01 . . . D 2 -0.576 22.605 29.478 1 52.46 ? C6A P01 2 B 1 HETATM 4 C C1A P01 . . . D 2 -1.109 23.806 29.907 1 51.2 ? C1A P01 2 B 1 HETATM 5 C C2A P01 . . . D 2 -2.448 24.087 29.615 1 52.76 ? C2A P01 2 B 1 HETATM 6 C C3A P01 . . . D 2 -3.241 23.203 28.876 1 53.53 ? C3A P01 2 B 1 HETATM 7 C C4A P01 . . . D 2 -2.703 22.005 28.436 1 53.44 ? C4A P01 2 B 1 HETATM 8 N N6 P01 . . . D 2 -0.411 24.709 30.653 1 50.53 ? N6 P01 2 B 1 HETATM 9 C C6 P01 . . . D 2 0.945 24.788 30.842 1 48.75 ? C6 P01 2 B 1 HETATM 10 C C5 P01 . . . D 2 1.412 25.828 31.635 1 46.47 ? C5 P01 2 B 1 HETATM 11 N N7 P01 . . . D 2 0.772 26.848 32.322 1 45.65 ? N7 P01 2 B 1 HETATM 12 C C4 P01 . . . D 2 2.729 25.957 31.826 1 46.81 ? C4 P01 2 B 1 HETATM 13 N N9 P01 . . . D 2 2.999 27 32.596 1 45.62 ? N9 P01 2 B 1 HETATM 14 C C10 P01 . . . D 2 4.427 27.264 32.949 1 45.35 ? C10 P01 2 B 1 HETATM 15 C C11 P01 . . . D 2 4.726 26.6 34.282 1 45.18 ? C11 P01 2 B 1 HETATM 16 C C12 P01 . . . D 2 4.743 28.741 33.021 1 45.42 ? C12 P01 2 B 1 HETATM 17 C C8 P01 . . . D 2 1.804 27.549 32.917 1 45.29 ? C8 P01 2 B 1 HETATM 18 N N3 P01 . . . D 2 3.624 25.107 31.279 1 48.71 ? N3 P01 2 B 1 HETATM 19 C C2 P01 . . . D 2 3.177 24.092 30.505 1 50.3 ? C2 P01 2 B 1 HETATM 20 N N1 P01 . . . D 2 1.846 23.931 30.29 1 48.9 ? N1 P01 2 B 1 HETATM 21 N N21 P01 . . . D 2 4.102 23.265 29.956 1 52.38 ? N21 P01 2 B 1 HETATM 22 C C22 P01 . . . D 2 3.772 22.217 28.998 1 53.14 ? C22 P01 2 B 1 HETATM 23 C C25 P01 . . . D 2 4.656 20.983 29.267 1 53.52 ? C25 P01 2 B 1 HETATM 24 C C26 P01 . . . D 2 4.672 20.608 30.759 1 53.41 ? C26 P01 2 B 1 HETATM 25 C C27 P01 . . . D 2 4.273 19.784 28.378 1 53.16 ? C27 P01 2 B 1 HETATM 26 C C23 P01 . . . D 2 3.925 22.757 27.578 1 53.58 ? C23 P01 2 B 1 HETATM 27 O O24 P01 . . . D 2 4.926 22.05 26.849 1 54.9 ? O24 P01 2 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #