data_1YP3 # _model_server_result.job_id fhBtEnPqVAbOIyE18pI-mA _model_server_result.datetime_utc '2024-11-23 05:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1011}' # _entry.id 1YP3 # _exptl.entry_id 1YP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.13 _cell.angle_gamma 90 _cell.entry_id 1YP3 _cell.length_a 79.581 _cell.length_b 142.955 _cell.length_c 90.438 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 12 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 12 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 12 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 12 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 339 n n S O2 SO4 doub 340 n n S O3 SO4 sing 341 n n S O4 SO4 sing 342 n n # _atom_sites.entry_id 1YP3 _atom_sites.fract_transf_matrix[1][1] 0.012566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005367 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 1000 1000 SO4 SO4 . F 2 SO4 A 1 1007 1007 SO4 SO4 . G 2 SO4 A 1 1008 1008 SO4 SO4 . H 2 SO4 A 1 1020 1020 SO4 SO4 . I 3 ATP A 1 757 757 ATP ATP . J 2 SO4 B 1 1001 1001 SO4 SO4 . K 2 SO4 B 1 1006 1006 SO4 SO4 . L 2 SO4 B 1 1009 1009 SO4 SO4 . M 2 SO4 C 1 1002 1002 SO4 SO4 . N 2 SO4 C 1 1005 1005 SO4 SO4 . O 2 SO4 C 1 1010 1010 SO4 SO4 . P 2 SO4 C 1 1022 1022 SO4 SO4 . Q 3 ATP C 1 758 758 ATP ATP . R 2 SO4 D 1 1003 1003 SO4 SO4 . S 2 SO4 D 1 1011 1011 SO4 SO4 . T 4 HOH A 1 1021 1 HOH HOH . T 4 HOH A 2 1022 2 HOH HOH . T 4 HOH A 3 1023 3 HOH HOH . T 4 HOH A 4 1024 5 HOH HOH . T 4 HOH A 5 1025 6 HOH HOH . T 4 HOH A 6 1026 7 HOH HOH . T 4 HOH A 7 1027 8 HOH HOH . T 4 HOH A 8 1028 9 HOH HOH . T 4 HOH A 9 1029 10 HOH HOH . T 4 HOH A 10 1030 11 HOH HOH . T 4 HOH A 11 1031 12 HOH HOH . T 4 HOH A 12 1032 13 HOH HOH . T 4 HOH A 13 1033 14 HOH HOH . T 4 HOH A 14 1034 18 HOH HOH . T 4 HOH A 15 1035 19 HOH HOH . T 4 HOH A 16 1036 21 HOH HOH . T 4 HOH A 17 1037 22 HOH HOH . T 4 HOH A 18 1038 23 HOH HOH . T 4 HOH A 19 1039 25 HOH HOH . T 4 HOH A 20 1040 27 HOH HOH . T 4 HOH A 21 1041 28 HOH HOH . T 4 HOH A 22 1042 106 HOH HOH . T 4 HOH A 23 1043 107 HOH HOH . T 4 HOH A 24 1044 108 HOH HOH . T 4 HOH A 25 1045 109 HOH HOH . T 4 HOH A 26 1046 112 HOH HOH . T 4 HOH A 27 1047 113 HOH HOH . T 4 HOH A 28 1048 114 HOH HOH . T 4 HOH A 29 1049 116 HOH HOH . T 4 HOH A 30 1050 127 HOH HOH . T 4 HOH A 31 1051 130 HOH HOH . T 4 HOH A 32 1052 131 HOH HOH . T 4 HOH A 33 1053 132 HOH HOH . T 4 HOH A 34 1054 133 HOH HOH . T 4 HOH A 35 1055 134 HOH HOH . T 4 HOH A 36 1056 135 HOH HOH . T 4 HOH A 37 1057 136 HOH HOH . T 4 HOH A 38 1058 137 HOH HOH . T 4 HOH A 39 1059 138 HOH HOH . T 4 HOH A 40 1060 139 HOH HOH . T 4 HOH A 41 1061 148 HOH HOH . T 4 HOH A 42 1062 163 HOH HOH . T 4 HOH A 43 1063 173 HOH HOH . T 4 HOH A 44 1064 174 HOH HOH . T 4 HOH A 45 1065 175 HOH HOH . T 4 HOH A 46 1066 176 HOH HOH . T 4 HOH A 47 1067 177 HOH HOH . T 4 HOH A 48 1068 179 HOH HOH . T 4 HOH A 49 1069 180 HOH HOH . T 4 HOH A 50 1070 188 HOH HOH . T 4 HOH A 51 1071 189 HOH HOH . T 4 HOH A 52 1072 190 HOH HOH . T 4 HOH A 53 1073 191 HOH HOH . T 4 HOH A 54 1074 192 HOH HOH . T 4 HOH A 55 1075 193 HOH HOH . T 4 HOH A 56 1076 194 HOH HOH . T 4 HOH A 57 1077 195 HOH HOH . T 4 HOH A 58 1078 200 HOH HOH . T 4 HOH A 59 1079 210 HOH HOH . T 4 HOH A 60 1080 211 HOH HOH . T 4 HOH A 61 1081 212 HOH HOH . T 4 HOH A 62 1082 213 HOH HOH . T 4 HOH A 63 1083 214 HOH HOH . T 4 HOH A 64 1084 229 HOH HOH . T 4 HOH A 65 1085 243 HOH HOH . T 4 HOH A 66 1086 244 HOH HOH . U 4 HOH B 1 1010 15 HOH HOH . U 4 HOH B 2 1011 16 HOH HOH . U 4 HOH B 3 1012 17 HOH HOH . U 4 HOH B 4 1013 20 HOH HOH . U 4 HOH B 5 1014 24 HOH HOH . U 4 HOH B 6 1015 26 HOH HOH . U 4 HOH B 7 1016 29 HOH HOH . U 4 HOH B 8 1017 30 HOH HOH . U 4 HOH B 9 1018 31 HOH HOH . U 4 HOH B 10 1019 32 HOH HOH . U 4 HOH B 11 1020 33 HOH HOH . U 4 HOH B 12 1021 37 HOH HOH . U 4 HOH B 13 1022 38 HOH HOH . U 4 HOH B 14 1023 39 HOH HOH . U 4 HOH B 15 1024 41 HOH HOH . U 4 HOH B 16 1025 42 HOH HOH . U 4 HOH B 17 1026 43 HOH HOH . U 4 HOH B 18 1027 44 HOH HOH . U 4 HOH B 19 1028 45 HOH HOH . U 4 HOH B 20 1029 46 HOH HOH . U 4 HOH B 21 1030 47 HOH HOH . U 4 HOH B 22 1031 48 HOH HOH . U 4 HOH B 23 1032 49 HOH HOH . U 4 HOH B 24 1033 50 HOH HOH . U 4 HOH B 25 1034 51 HOH HOH . U 4 HOH B 26 1035 115 HOH HOH . U 4 HOH B 27 1036 117 HOH HOH . U 4 HOH B 28 1037 118 HOH HOH . U 4 HOH B 29 1038 120 HOH HOH . U 4 HOH B 30 1039 121 HOH HOH . U 4 HOH B 31 1040 122 HOH HOH . U 4 HOH B 32 1041 123 HOH HOH . U 4 HOH B 33 1042 124 HOH HOH . U 4 HOH B 34 1043 125 HOH HOH . U 4 HOH B 35 1044 126 HOH HOH . U 4 HOH B 36 1045 140 HOH HOH . U 4 HOH B 37 1046 142 HOH HOH . U 4 HOH B 38 1047 143 HOH HOH . U 4 HOH B 39 1048 144 HOH HOH . U 4 HOH B 40 1049 162 HOH HOH . U 4 HOH B 41 1050 178 HOH HOH . U 4 HOH B 42 1051 181 HOH HOH . U 4 HOH B 43 1052 182 HOH HOH . U 4 HOH B 44 1053 183 HOH HOH . U 4 HOH B 45 1054 184 HOH HOH . U 4 HOH B 46 1055 196 HOH HOH . U 4 HOH B 47 1056 197 HOH HOH . U 4 HOH B 48 1057 198 HOH HOH . U 4 HOH B 49 1058 215 HOH HOH . U 4 HOH B 50 1059 216 HOH HOH . U 4 HOH B 51 1060 218 HOH HOH . U 4 HOH B 52 1061 219 HOH HOH . U 4 HOH B 53 1062 230 HOH HOH . U 4 HOH B 54 1063 245 HOH HOH . U 4 HOH B 55 1064 246 HOH HOH . U 4 HOH B 56 1065 247 HOH HOH . U 4 HOH B 57 1066 248 HOH HOH . U 4 HOH B 58 1067 251 HOH HOH . V 4 HOH C 1 1023 34 HOH HOH . V 4 HOH C 2 1024 35 HOH HOH . V 4 HOH C 3 1025 36 HOH HOH . V 4 HOH C 4 1026 40 HOH HOH . V 4 HOH C 5 1027 52 HOH HOH . V 4 HOH C 6 1028 53 HOH HOH . V 4 HOH C 7 1029 54 HOH HOH . V 4 HOH C 8 1030 55 HOH HOH . V 4 HOH C 9 1031 56 HOH HOH . V 4 HOH C 10 1032 57 HOH HOH . V 4 HOH C 11 1033 58 HOH HOH . V 4 HOH C 12 1034 59 HOH HOH . V 4 HOH C 13 1035 60 HOH HOH . V 4 HOH C 14 1036 61 HOH HOH . V 4 HOH C 15 1037 63 HOH HOH . V 4 HOH C 16 1038 64 HOH HOH . V 4 HOH C 17 1039 65 HOH HOH . V 4 HOH C 18 1040 66 HOH HOH . V 4 HOH C 19 1041 67 HOH HOH . V 4 HOH C 20 1042 68 HOH HOH . V 4 HOH C 21 1043 69 HOH HOH . V 4 HOH C 22 1044 70 HOH HOH . V 4 HOH C 23 1045 71 HOH HOH . V 4 HOH C 24 1046 72 HOH HOH . V 4 HOH C 25 1047 73 HOH HOH . V 4 HOH C 26 1048 74 HOH HOH . V 4 HOH C 27 1049 75 HOH HOH . V 4 HOH C 28 1050 76 HOH HOH . V 4 HOH C 29 1051 77 HOH HOH . V 4 HOH C 30 1052 79 HOH HOH . V 4 HOH C 31 1053 80 HOH HOH . V 4 HOH C 32 1054 81 HOH HOH . V 4 HOH C 33 1055 82 HOH HOH . V 4 HOH C 34 1056 84 HOH HOH . V 4 HOH C 35 1057 85 HOH HOH . V 4 HOH C 36 1058 86 HOH HOH . V 4 HOH C 37 1059 87 HOH HOH . V 4 HOH C 38 1060 88 HOH HOH . V 4 HOH C 39 1061 89 HOH HOH . V 4 HOH C 40 1062 90 HOH HOH . V 4 HOH C 41 1063 91 HOH HOH . V 4 HOH C 42 1064 92 HOH HOH . V 4 HOH C 43 1065 101 HOH HOH . V 4 HOH C 44 1066 105 HOH HOH . V 4 HOH C 45 1067 110 HOH HOH . V 4 HOH C 46 1068 111 HOH HOH . V 4 HOH C 47 1069 119 HOH HOH . V 4 HOH C 48 1070 128 HOH HOH . V 4 HOH C 49 1071 129 HOH HOH . V 4 HOH C 50 1072 141 HOH HOH . V 4 HOH C 51 1073 145 HOH HOH . V 4 HOH C 52 1074 146 HOH HOH . V 4 HOH C 53 1075 147 HOH HOH . V 4 HOH C 54 1076 149 HOH HOH . V 4 HOH C 55 1077 150 HOH HOH . V 4 HOH C 56 1078 151 HOH HOH . V 4 HOH C 57 1079 152 HOH HOH . V 4 HOH C 58 1080 153 HOH HOH . V 4 HOH C 59 1081 154 HOH HOH . V 4 HOH C 60 1082 155 HOH HOH . V 4 HOH C 61 1083 156 HOH HOH . V 4 HOH C 62 1084 158 HOH HOH . V 4 HOH C 63 1085 159 HOH HOH . V 4 HOH C 64 1086 160 HOH HOH . V 4 HOH C 65 1087 161 HOH HOH . V 4 HOH C 66 1088 185 HOH HOH . V 4 HOH C 67 1089 186 HOH HOH . V 4 HOH C 68 1090 199 HOH HOH . V 4 HOH C 69 1091 201 HOH HOH . V 4 HOH C 70 1092 202 HOH HOH . V 4 HOH C 71 1093 203 HOH HOH . V 4 HOH C 72 1094 204 HOH HOH . V 4 HOH C 73 1095 205 HOH HOH . V 4 HOH C 74 1096 206 HOH HOH . V 4 HOH C 75 1097 207 HOH HOH . V 4 HOH C 76 1098 208 HOH HOH . V 4 HOH C 77 1099 217 HOH HOH . V 4 HOH C 78 1100 220 HOH HOH . V 4 HOH C 79 1101 221 HOH HOH . V 4 HOH C 80 1102 222 HOH HOH . V 4 HOH C 81 1103 223 HOH HOH . V 4 HOH C 82 1104 224 HOH HOH . V 4 HOH C 83 1105 225 HOH HOH . V 4 HOH C 84 1106 227 HOH HOH . V 4 HOH C 85 1107 231 HOH HOH . V 4 HOH C 86 1108 232 HOH HOH . V 4 HOH C 87 1109 233 HOH HOH . V 4 HOH C 88 1110 234 HOH HOH . V 4 HOH C 89 1111 235 HOH HOH . V 4 HOH C 90 1112 236 HOH HOH . V 4 HOH C 91 1113 237 HOH HOH . V 4 HOH C 92 1114 238 HOH HOH . V 4 HOH C 93 1115 239 HOH HOH . V 4 HOH C 94 1116 240 HOH HOH . V 4 HOH C 95 1117 249 HOH HOH . V 4 HOH C 96 1118 250 HOH HOH . V 4 HOH C 97 1119 252 HOH HOH . W 4 HOH D 1 1012 4 HOH HOH . W 4 HOH D 2 1013 62 HOH HOH . W 4 HOH D 3 1014 78 HOH HOH . W 4 HOH D 4 1015 83 HOH HOH . W 4 HOH D 5 1016 93 HOH HOH . W 4 HOH D 6 1017 94 HOH HOH . W 4 HOH D 7 1018 95 HOH HOH . W 4 HOH D 8 1019 96 HOH HOH . W 4 HOH D 9 1020 97 HOH HOH . W 4 HOH D 10 1021 98 HOH HOH . W 4 HOH D 11 1022 99 HOH HOH . W 4 HOH D 12 1023 100 HOH HOH . W 4 HOH D 13 1024 102 HOH HOH . W 4 HOH D 14 1025 103 HOH HOH . W 4 HOH D 15 1026 104 HOH HOH . W 4 HOH D 16 1027 157 HOH HOH . W 4 HOH D 17 1028 164 HOH HOH . W 4 HOH D 18 1029 165 HOH HOH . W 4 HOH D 19 1030 166 HOH HOH . W 4 HOH D 20 1031 167 HOH HOH . W 4 HOH D 21 1032 168 HOH HOH . W 4 HOH D 22 1033 169 HOH HOH . W 4 HOH D 23 1034 170 HOH HOH . W 4 HOH D 24 1035 171 HOH HOH . W 4 HOH D 25 1036 172 HOH HOH . W 4 HOH D 26 1037 187 HOH HOH . W 4 HOH D 27 1038 209 HOH HOH . W 4 HOH D 28 1039 226 HOH HOH . W 4 HOH D 29 1040 228 HOH HOH . W 4 HOH D 30 1041 241 HOH HOH . W 4 HOH D 31 1042 242 HOH HOH . W 4 HOH D 32 1043 253 HOH HOH . W 4 HOH D 33 1044 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . S 2 28.234 -9.768 82.706 1 66.27 ? S SO4 1011 D 1 HETATM 2 O O1 SO4 . . . S 2 26.806 -9.422 82.619 1 66.14 ? O1 SO4 1011 D 1 HETATM 3 O O2 SO4 . . . S 2 28.583 -10.705 81.622 1 66.35 ? O2 SO4 1011 D 1 HETATM 4 O O3 SO4 . . . S 2 29.045 -8.542 82.567 1 62.7 ? O3 SO4 1011 D 1 HETATM 5 O O4 SO4 . . . S 2 28.483 -10.411 84.012 1 67.82 ? O4 SO4 1011 D 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #