data_1YP6 # _model_server_result.job_id 271rPEGv749-CDCslX51IQ _model_server_result.datetime_utc '2024-11-05 08:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1YP6 # _exptl.entry_id 1YP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YP6 _cell.length_a 53.834 _cell.length_b 53.834 _cell.length_c 137.422 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YP6 _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 64 1_555 A SG CYS 169 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE2 GLU 25 A GLU 13 1_555 C CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A OE1 GLU 25 A GLU 13 1_555 C CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A OE2 GLU 30 A GLU 18 5_645 B CD CD . A CD 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 A OE1 GLU 30 A GLU 18 5_645 B CD CD . A CD 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc5 A OD2 ASP 122 A ASP 110 8_675 C CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 A OE1 GLU 151 A GLU 139 1_555 B CD CD . A CD 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 A OE2 GLU 151 A GLU 139 1_555 B CD CD . A CD 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc8 B CD CD . A CD 200 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 B CD CD . A CD 200 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 B CD CD . A CD 200 1_555 F O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 C CD CD . A CD 201 1_555 F O HOH . A HOH 406 8_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc12 C CD CD . A CD 201 1_555 F O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc13 C CD CD . A CD 201 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YP6 _atom_sites.fract_transf_matrix[1][1] 0.018576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 200 200 CD CD . C 2 CD A 1 201 201 CD CD . D 3 CL A 1 202 202 CL CL . E 4 PRZ A 1 203 7 PRZ PRZ . F 5 HOH A 1 204 203 HOH HOH . F 5 HOH A 2 205 204 HOH HOH . F 5 HOH A 3 206 205 HOH HOH . F 5 HOH A 4 207 206 HOH HOH . F 5 HOH A 5 208 207 HOH HOH . F 5 HOH A 6 209 208 HOH HOH . F 5 HOH A 7 210 209 HOH HOH . F 5 HOH A 8 211 210 HOH HOH . F 5 HOH A 9 212 211 HOH HOH . F 5 HOH A 10 213 212 HOH HOH . F 5 HOH A 11 214 213 HOH HOH . F 5 HOH A 12 215 214 HOH HOH . F 5 HOH A 13 216 215 HOH HOH . F 5 HOH A 14 217 216 HOH HOH . F 5 HOH A 15 218 217 HOH HOH . F 5 HOH A 16 219 218 HOH HOH . F 5 HOH A 17 220 219 HOH HOH . F 5 HOH A 18 221 220 HOH HOH . F 5 HOH A 19 222 221 HOH HOH . F 5 HOH A 20 223 222 HOH HOH . F 5 HOH A 21 224 223 HOH HOH . F 5 HOH A 22 225 224 HOH HOH . F 5 HOH A 23 226 225 HOH HOH . F 5 HOH A 24 227 226 HOH HOH . F 5 HOH A 25 228 227 HOH HOH . F 5 HOH A 26 229 228 HOH HOH . F 5 HOH A 27 230 229 HOH HOH . F 5 HOH A 28 231 230 HOH HOH . F 5 HOH A 29 232 231 HOH HOH . F 5 HOH A 30 233 232 HOH HOH . F 5 HOH A 31 234 233 HOH HOH . F 5 HOH A 32 235 234 HOH HOH . F 5 HOH A 33 236 235 HOH HOH . F 5 HOH A 34 237 236 HOH HOH . F 5 HOH A 35 238 237 HOH HOH . F 5 HOH A 36 239 238 HOH HOH . F 5 HOH A 37 240 239 HOH HOH . F 5 HOH A 38 241 240 HOH HOH . F 5 HOH A 39 242 241 HOH HOH . F 5 HOH A 40 243 242 HOH HOH . F 5 HOH A 41 244 243 HOH HOH . F 5 HOH A 42 245 244 HOH HOH . F 5 HOH A 43 246 245 HOH HOH . F 5 HOH A 44 247 246 HOH HOH . F 5 HOH A 45 248 247 HOH HOH . F 5 HOH A 46 249 248 HOH HOH . F 5 HOH A 47 250 249 HOH HOH . F 5 HOH A 48 251 250 HOH HOH . F 5 HOH A 49 252 251 HOH HOH . F 5 HOH A 50 253 252 HOH HOH . F 5 HOH A 51 254 253 HOH HOH . F 5 HOH A 52 255 254 HOH HOH . F 5 HOH A 53 256 255 HOH HOH . F 5 HOH A 54 257 256 HOH HOH . F 5 HOH A 55 258 257 HOH HOH . F 5 HOH A 56 259 258 HOH HOH . F 5 HOH A 57 260 259 HOH HOH . F 5 HOH A 58 261 260 HOH HOH . F 5 HOH A 59 262 261 HOH HOH . F 5 HOH A 60 263 262 HOH HOH . F 5 HOH A 61 264 263 HOH HOH . F 5 HOH A 62 265 264 HOH HOH . F 5 HOH A 63 266 265 HOH HOH . F 5 HOH A 64 267 266 HOH HOH . F 5 HOH A 65 268 267 HOH HOH . F 5 HOH A 66 269 268 HOH HOH . F 5 HOH A 67 270 269 HOH HOH . F 5 HOH A 68 271 270 HOH HOH . F 5 HOH A 69 272 271 HOH HOH . F 5 HOH A 70 273 272 HOH HOH . F 5 HOH A 71 274 273 HOH HOH . F 5 HOH A 72 275 274 HOH HOH . F 5 HOH A 73 276 275 HOH HOH . F 5 HOH A 74 277 276 HOH HOH . F 5 HOH A 75 278 277 HOH HOH . F 5 HOH A 76 279 278 HOH HOH . F 5 HOH A 77 280 279 HOH HOH . F 5 HOH A 78 281 280 HOH HOH . F 5 HOH A 79 282 281 HOH HOH . F 5 HOH A 80 283 282 HOH HOH . F 5 HOH A 81 284 283 HOH HOH . F 5 HOH A 82 285 284 HOH HOH . F 5 HOH A 83 286 285 HOH HOH . F 5 HOH A 84 287 286 HOH HOH . F 5 HOH A 85 288 287 HOH HOH . F 5 HOH A 86 289 288 HOH HOH . F 5 HOH A 87 290 289 HOH HOH . F 5 HOH A 88 291 290 HOH HOH . F 5 HOH A 89 292 291 HOH HOH . F 5 HOH A 90 293 292 HOH HOH . F 5 HOH A 91 294 293 HOH HOH . F 5 HOH A 92 295 294 HOH HOH . F 5 HOH A 93 296 295 HOH HOH . F 5 HOH A 94 297 296 HOH HOH . F 5 HOH A 95 298 297 HOH HOH . F 5 HOH A 96 299 298 HOH HOH . F 5 HOH A 97 300 300 HOH HOH . F 5 HOH A 98 301 301 HOH HOH . F 5 HOH A 99 302 302 HOH HOH . F 5 HOH A 100 303 303 HOH HOH . F 5 HOH A 101 304 304 HOH HOH . F 5 HOH A 102 305 305 HOH HOH . F 5 HOH A 103 306 306 HOH HOH . F 5 HOH A 104 307 307 HOH HOH . F 5 HOH A 105 308 308 HOH HOH . F 5 HOH A 106 309 309 HOH HOH . F 5 HOH A 107 310 310 HOH HOH . F 5 HOH A 108 311 311 HOH HOH . F 5 HOH A 109 312 312 HOH HOH . F 5 HOH A 110 313 313 HOH HOH . F 5 HOH A 111 314 314 HOH HOH . F 5 HOH A 112 315 315 HOH HOH . F 5 HOH A 113 316 316 HOH HOH . F 5 HOH A 114 317 317 HOH HOH . F 5 HOH A 115 318 318 HOH HOH . F 5 HOH A 116 319 319 HOH HOH . F 5 HOH A 117 320 320 HOH HOH . F 5 HOH A 118 321 321 HOH HOH . F 5 HOH A 119 322 322 HOH HOH . F 5 HOH A 120 323 323 HOH HOH . F 5 HOH A 121 324 324 HOH HOH . F 5 HOH A 122 325 325 HOH HOH . F 5 HOH A 123 326 326 HOH HOH . F 5 HOH A 124 327 327 HOH HOH . F 5 HOH A 125 328 328 HOH HOH . F 5 HOH A 126 329 329 HOH HOH . F 5 HOH A 127 330 330 HOH HOH . F 5 HOH A 128 331 331 HOH HOH . F 5 HOH A 129 332 332 HOH HOH . F 5 HOH A 130 333 333 HOH HOH . F 5 HOH A 131 334 334 HOH HOH . F 5 HOH A 132 335 335 HOH HOH . F 5 HOH A 133 336 336 HOH HOH . F 5 HOH A 134 337 337 HOH HOH . F 5 HOH A 135 338 338 HOH HOH . F 5 HOH A 136 339 339 HOH HOH . F 5 HOH A 137 340 340 HOH HOH . F 5 HOH A 138 341 341 HOH HOH . F 5 HOH A 139 342 342 HOH HOH . F 5 HOH A 140 343 343 HOH HOH . F 5 HOH A 141 344 344 HOH HOH . F 5 HOH A 142 345 345 HOH HOH . F 5 HOH A 143 346 346 HOH HOH . F 5 HOH A 144 347 347 HOH HOH . F 5 HOH A 145 348 348 HOH HOH . F 5 HOH A 146 349 349 HOH HOH . F 5 HOH A 147 350 350 HOH HOH . F 5 HOH A 148 351 351 HOH HOH . F 5 HOH A 149 352 352 HOH HOH . F 5 HOH A 150 353 353 HOH HOH . F 5 HOH A 151 354 354 HOH HOH . F 5 HOH A 152 355 355 HOH HOH . F 5 HOH A 153 356 356 HOH HOH . F 5 HOH A 154 357 357 HOH HOH . F 5 HOH A 155 358 358 HOH HOH . F 5 HOH A 156 359 359 HOH HOH . F 5 HOH A 157 360 360 HOH HOH . F 5 HOH A 158 361 361 HOH HOH . F 5 HOH A 159 362 362 HOH HOH . F 5 HOH A 160 363 363 HOH HOH . F 5 HOH A 161 364 364 HOH HOH . F 5 HOH A 162 365 365 HOH HOH . F 5 HOH A 163 366 366 HOH HOH . F 5 HOH A 164 367 367 HOH HOH . F 5 HOH A 165 368 368 HOH HOH . F 5 HOH A 166 369 369 HOH HOH . F 5 HOH A 167 370 370 HOH HOH . F 5 HOH A 168 371 371 HOH HOH . F 5 HOH A 169 372 372 HOH HOH . F 5 HOH A 170 373 373 HOH HOH . F 5 HOH A 171 374 374 HOH HOH . F 5 HOH A 172 375 375 HOH HOH . F 5 HOH A 173 376 376 HOH HOH . F 5 HOH A 174 377 377 HOH HOH . F 5 HOH A 175 378 378 HOH HOH . F 5 HOH A 176 379 379 HOH HOH . F 5 HOH A 177 380 380 HOH HOH . F 5 HOH A 178 381 381 HOH HOH . F 5 HOH A 179 382 382 HOH HOH . F 5 HOH A 180 383 383 HOH HOH . F 5 HOH A 181 384 384 HOH HOH . F 5 HOH A 182 385 385 HOH HOH . F 5 HOH A 183 386 386 HOH HOH . F 5 HOH A 184 387 387 HOH HOH . F 5 HOH A 185 388 388 HOH HOH . F 5 HOH A 186 389 389 HOH HOH . F 5 HOH A 187 390 390 HOH HOH . F 5 HOH A 188 391 391 HOH HOH . F 5 HOH A 189 392 392 HOH HOH . F 5 HOH A 190 393 393 HOH HOH . F 5 HOH A 191 394 394 HOH HOH . F 5 HOH A 192 395 395 HOH HOH . F 5 HOH A 193 396 396 HOH HOH . F 5 HOH A 194 397 397 HOH HOH . F 5 HOH A 195 398 398 HOH HOH . F 5 HOH A 196 399 399 HOH HOH . F 5 HOH A 197 400 400 HOH HOH . F 5 HOH A 198 401 401 HOH HOH . F 5 HOH A 199 402 402 HOH HOH . F 5 HOH A 200 403 403 HOH HOH . F 5 HOH A 201 404 404 HOH HOH . F 5 HOH A 202 405 405 HOH HOH . F 5 HOH A 203 406 406 HOH HOH . F 5 HOH A 204 407 407 HOH HOH . F 5 HOH A 205 408 408 HOH HOH . F 5 HOH A 206 409 409 HOH HOH . F 5 HOH A 207 410 410 HOH HOH . F 5 HOH A 208 411 411 HOH HOH . F 5 HOH A 209 412 412 HOH HOH . F 5 HOH A 210 413 413 HOH HOH . F 5 HOH A 211 414 414 HOH HOH . F 5 HOH A 212 415 415 HOH HOH . F 5 HOH A 213 416 416 HOH HOH . F 5 HOH A 214 417 417 HOH HOH . F 5 HOH A 215 418 418 HOH HOH . F 5 HOH A 216 419 419 HOH HOH . F 5 HOH A 217 420 420 HOH HOH . F 5 HOH A 218 421 421 HOH HOH . F 5 HOH A 219 422 422 HOH HOH . F 5 HOH A 220 423 423 HOH HOH . F 5 HOH A 221 424 424 HOH HOH . F 5 HOH A 222 425 426 HOH HOH . F 5 HOH A 223 426 427 HOH HOH . F 5 HOH A 224 427 428 HOH HOH . F 5 HOH A 225 428 429 HOH HOH . F 5 HOH A 226 429 430 HOH HOH . F 5 HOH A 227 430 431 HOH HOH . F 5 HOH A 228 431 432 HOH HOH . F 5 HOH A 229 432 433 HOH HOH . F 5 HOH A 230 433 434 HOH HOH . F 5 HOH A 231 434 435 HOH HOH . F 5 HOH A 232 435 436 HOH HOH . F 5 HOH A 233 436 437 HOH HOH . F 5 HOH A 234 437 438 HOH HOH . F 5 HOH A 235 438 439 HOH HOH . F 5 HOH A 236 439 440 HOH HOH . F 5 HOH A 237 440 441 HOH HOH . F 5 HOH A 238 441 442 HOH HOH . F 5 HOH A 239 442 443 HOH HOH . F 5 HOH A 240 443 444 HOH HOH . F 5 HOH A 241 444 445 HOH HOH . F 5 HOH A 242 445 446 HOH HOH . F 5 HOH A 243 446 447 HOH HOH . F 5 HOH A 244 447 448 HOH HOH . F 5 HOH A 245 448 449 HOH HOH . F 5 HOH A 246 449 450 HOH HOH . F 5 HOH A 247 450 451 HOH HOH . F 5 HOH A 248 451 452 HOH HOH . F 5 HOH A 249 452 453 HOH HOH . F 5 HOH A 250 453 454 HOH HOH . F 5 HOH A 251 454 455 HOH HOH . F 5 HOH A 252 455 456 HOH HOH . F 5 HOH A 253 456 457 HOH HOH . F 5 HOH A 254 457 459 HOH HOH . F 5 HOH A 255 458 460 HOH HOH . F 5 HOH A 256 459 461 HOH HOH . F 5 HOH A 257 460 462 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.753 _atom_site.Cartn_y 44.31 _atom_site.Cartn_z 40.834 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #