data_1YP7 # _model_server_result.job_id mVE8E65DYleQWdjc-91hTA _model_server_result.datetime_utc '2024-11-05 10:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1YP7 # _exptl.entry_id 1YP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YP7 _cell.length_a 56.459 _cell.length_b 56.459 _cell.length_c 104.071 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YP7 _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 64 1_555 A SG CYS 169 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 30 A GLU 18 5_645 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc2 A OE2 GLU 30 A GLU 18 5_645 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 A NE2 HIS 58 A HIS 46 5_645 C CD CD . A CD 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc4 A OE2 GLU 74 A GLU 62 3_644 D CD CD . A CD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc5 A NE2 HIS 116 A HIS 104 1_555 D CD CD . A CD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 A OE1 GLN 127 A GLN 115 1_555 D CD CD . A CD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc7 A OG SER 140 A SER 128 1_555 C CD CD . A CD 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc8 A OE1 GLU 151 A GLU 139 1_555 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc9 A OE2 GLU 151 A GLU 139 1_555 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc10 A ND1 HIS 153 A HIS 141 1_555 D CD CD . A CD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 B CD CD . A CD 163 1_555 E O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc12 B CD CD . A CD 163 1_555 E O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc13 B CD CD . A CD 163 1_555 E O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc14 C CD CD . A CD 164 1_555 E O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc15 C CD CD . A CD 164 1_555 E O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc16 C CD CD . A CD 164 1_555 E O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc17 D CD CD . A CD 178 1_555 E O HOH . A HOH 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc18 D CD CD . A CD 178 1_555 E O HOH . A HOH 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YP7 _atom_sites.fract_transf_matrix[1][1] 0.017712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 163 1 CD CD . C 2 CD A 1 164 2 CD CD . D 2 CD A 1 178 178 CD CD . E 3 HOH A 1 179 3 HOH HOH . E 3 HOH A 2 180 5 HOH HOH . E 3 HOH A 3 181 6 HOH HOH . E 3 HOH A 4 182 8 HOH HOH . E 3 HOH A 5 183 9 HOH HOH . E 3 HOH A 6 184 10 HOH HOH . E 3 HOH A 7 185 11 HOH HOH . E 3 HOH A 8 186 12 HOH HOH . E 3 HOH A 9 187 13 HOH HOH . E 3 HOH A 10 188 14 HOH HOH . E 3 HOH A 11 189 15 HOH HOH . E 3 HOH A 12 190 16 HOH HOH . E 3 HOH A 13 191 17 HOH HOH . E 3 HOH A 14 192 18 HOH HOH . E 3 HOH A 15 193 19 HOH HOH . E 3 HOH A 16 194 20 HOH HOH . E 3 HOH A 17 195 21 HOH HOH . E 3 HOH A 18 196 22 HOH HOH . E 3 HOH A 19 197 23 HOH HOH . E 3 HOH A 20 198 24 HOH HOH . E 3 HOH A 21 199 26 HOH HOH . E 3 HOH A 22 200 27 HOH HOH . E 3 HOH A 23 201 28 HOH HOH . E 3 HOH A 24 202 29 HOH HOH . E 3 HOH A 25 203 30 HOH HOH . E 3 HOH A 26 204 31 HOH HOH . E 3 HOH A 27 205 32 HOH HOH . E 3 HOH A 28 206 33 HOH HOH . E 3 HOH A 29 207 34 HOH HOH . E 3 HOH A 30 208 35 HOH HOH . E 3 HOH A 31 209 36 HOH HOH . E 3 HOH A 32 210 37 HOH HOH . E 3 HOH A 33 211 39 HOH HOH . E 3 HOH A 34 212 40 HOH HOH . E 3 HOH A 35 213 41 HOH HOH . E 3 HOH A 36 214 42 HOH HOH . E 3 HOH A 37 215 43 HOH HOH . E 3 HOH A 38 216 44 HOH HOH . E 3 HOH A 39 217 45 HOH HOH . E 3 HOH A 40 218 46 HOH HOH . E 3 HOH A 41 219 47 HOH HOH . E 3 HOH A 42 220 48 HOH HOH . E 3 HOH A 43 221 49 HOH HOH . E 3 HOH A 44 222 50 HOH HOH . E 3 HOH A 45 223 51 HOH HOH . E 3 HOH A 46 224 52 HOH HOH . E 3 HOH A 47 225 53 HOH HOH . E 3 HOH A 48 226 54 HOH HOH . E 3 HOH A 49 227 55 HOH HOH . E 3 HOH A 50 228 56 HOH HOH . E 3 HOH A 51 229 57 HOH HOH . E 3 HOH A 52 230 58 HOH HOH . E 3 HOH A 53 231 59 HOH HOH . E 3 HOH A 54 232 60 HOH HOH . E 3 HOH A 55 233 61 HOH HOH . E 3 HOH A 56 234 62 HOH HOH . E 3 HOH A 57 235 63 HOH HOH . E 3 HOH A 58 236 65 HOH HOH . E 3 HOH A 59 237 66 HOH HOH . E 3 HOH A 60 238 67 HOH HOH . E 3 HOH A 61 239 68 HOH HOH . E 3 HOH A 62 240 69 HOH HOH . E 3 HOH A 63 241 70 HOH HOH . E 3 HOH A 64 242 71 HOH HOH . E 3 HOH A 65 243 72 HOH HOH . E 3 HOH A 66 244 73 HOH HOH . E 3 HOH A 67 245 74 HOH HOH . E 3 HOH A 68 246 76 HOH HOH . E 3 HOH A 69 247 77 HOH HOH . E 3 HOH A 70 248 79 HOH HOH . E 3 HOH A 71 249 81 HOH HOH . E 3 HOH A 72 250 82 HOH HOH . E 3 HOH A 73 251 83 HOH HOH . E 3 HOH A 74 252 84 HOH HOH . E 3 HOH A 75 253 85 HOH HOH . E 3 HOH A 76 254 86 HOH HOH . E 3 HOH A 77 255 87 HOH HOH . E 3 HOH A 78 256 88 HOH HOH . E 3 HOH A 79 257 89 HOH HOH . E 3 HOH A 80 258 90 HOH HOH . E 3 HOH A 81 259 91 HOH HOH . E 3 HOH A 82 260 92 HOH HOH . E 3 HOH A 83 261 93 HOH HOH . E 3 HOH A 84 262 94 HOH HOH . E 3 HOH A 85 263 95 HOH HOH . E 3 HOH A 86 264 96 HOH HOH . E 3 HOH A 87 265 97 HOH HOH . E 3 HOH A 88 266 98 HOH HOH . E 3 HOH A 89 267 99 HOH HOH . E 3 HOH A 90 268 100 HOH HOH . E 3 HOH A 91 269 101 HOH HOH . E 3 HOH A 92 270 102 HOH HOH . E 3 HOH A 93 271 103 HOH HOH . E 3 HOH A 94 272 104 HOH HOH . E 3 HOH A 95 273 105 HOH HOH . E 3 HOH A 96 274 106 HOH HOH . E 3 HOH A 97 275 107 HOH HOH . E 3 HOH A 98 276 108 HOH HOH . E 3 HOH A 99 277 109 HOH HOH . E 3 HOH A 100 278 111 HOH HOH . E 3 HOH A 101 279 112 HOH HOH . E 3 HOH A 102 280 113 HOH HOH . E 3 HOH A 103 281 114 HOH HOH . E 3 HOH A 104 282 115 HOH HOH . E 3 HOH A 105 283 116 HOH HOH . E 3 HOH A 106 284 117 HOH HOH . E 3 HOH A 107 285 119 HOH HOH . E 3 HOH A 108 286 120 HOH HOH . E 3 HOH A 109 287 122 HOH HOH . E 3 HOH A 110 288 123 HOH HOH . E 3 HOH A 111 289 124 HOH HOH . E 3 HOH A 112 290 125 HOH HOH . E 3 HOH A 113 291 126 HOH HOH . E 3 HOH A 114 292 127 HOH HOH . E 3 HOH A 115 293 128 HOH HOH . E 3 HOH A 116 294 129 HOH HOH . E 3 HOH A 117 295 130 HOH HOH . E 3 HOH A 118 296 131 HOH HOH . E 3 HOH A 119 297 132 HOH HOH . E 3 HOH A 120 298 133 HOH HOH . E 3 HOH A 121 299 134 HOH HOH . E 3 HOH A 122 300 135 HOH HOH . E 3 HOH A 123 301 136 HOH HOH . E 3 HOH A 124 302 137 HOH HOH . E 3 HOH A 125 303 138 HOH HOH . E 3 HOH A 126 304 139 HOH HOH . E 3 HOH A 127 305 142 HOH HOH . E 3 HOH A 128 306 143 HOH HOH . E 3 HOH A 129 307 145 HOH HOH . E 3 HOH A 130 308 146 HOH HOH . E 3 HOH A 131 309 147 HOH HOH . E 3 HOH A 132 310 148 HOH HOH . E 3 HOH A 133 311 149 HOH HOH . E 3 HOH A 134 312 150 HOH HOH . E 3 HOH A 135 313 151 HOH HOH . E 3 HOH A 136 314 152 HOH HOH . E 3 HOH A 137 315 153 HOH HOH . E 3 HOH A 138 316 154 HOH HOH . E 3 HOH A 139 317 156 HOH HOH . E 3 HOH A 140 318 157 HOH HOH . E 3 HOH A 141 319 158 HOH HOH . E 3 HOH A 142 320 159 HOH HOH . E 3 HOH A 143 321 160 HOH HOH . E 3 HOH A 144 322 161 HOH HOH . E 3 HOH A 145 323 162 HOH HOH . E 3 HOH A 146 324 163 HOH HOH . E 3 HOH A 147 325 164 HOH HOH . E 3 HOH A 148 326 165 HOH HOH . E 3 HOH A 149 327 166 HOH HOH . E 3 HOH A 150 328 167 HOH HOH . E 3 HOH A 151 329 168 HOH HOH . E 3 HOH A 152 330 169 HOH HOH . E 3 HOH A 153 331 170 HOH HOH . E 3 HOH A 154 332 171 HOH HOH . E 3 HOH A 155 333 172 HOH HOH . E 3 HOH A 156 334 173 HOH HOH . E 3 HOH A 157 335 174 HOH HOH . E 3 HOH A 158 336 175 HOH HOH . E 3 HOH A 159 337 176 HOH HOH . E 3 HOH A 160 338 177 HOH HOH . E 3 HOH A 161 339 179 HOH HOH . E 3 HOH A 162 340 180 HOH HOH . E 3 HOH A 163 341 181 HOH HOH . E 3 HOH A 164 342 182 HOH HOH . E 3 HOH A 165 343 184 HOH HOH . E 3 HOH A 166 344 185 HOH HOH . E 3 HOH A 167 345 186 HOH HOH . E 3 HOH A 168 346 187 HOH HOH . E 3 HOH A 169 347 188 HOH HOH . E 3 HOH A 170 348 189 HOH HOH . E 3 HOH A 171 349 190 HOH HOH . E 3 HOH A 172 350 191 HOH HOH . E 3 HOH A 173 351 192 HOH HOH . E 3 HOH A 174 352 193 HOH HOH . E 3 HOH A 175 353 194 HOH HOH . E 3 HOH A 176 354 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 37.592 _atom_site.Cartn_y 36.36 _atom_site.Cartn_z 48.237 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 164 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #