data_1YP9
#
_model_server_result.job_id            n9B9ibW_AGNkV0Jz41s0pg 
_model_server_result.datetime_utc      '2024-11-06 02:50:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":3333}' 
#
_entry.id    1YP9 
#
_exptl.entry_id    1YP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YP9 
_cell.length_a            61.2 
_cell.length_b            63.5 
_cell.length_c            69.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 3333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 3333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 3333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 3333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 B CA CA . A CA 3333 1_555 F O HOH . A HOH 9005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 B CA CA . A CA 3333 1_555 F O HOH . A HOH 9118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YP9 
_atom_sites.fract_transf_matrix[1][1]    0.01634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015748 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01443 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 3333 3333 CA CA . 
C 3 UIZ A 1 2222 2222 UIZ UIZ . 
D 4 GOL A 1 4444 4444 GOL GOL . 
E 4 GOL A 1 4445 4445 GOL GOL . 
F 5 HOH A 1 9001 9001 HOH HOH . 
F 5 HOH A 2 9002 9002 HOH HOH . 
F 5 HOH A 3 9003 9003 HOH HOH . 
F 5 HOH A 4 9004 9004 HOH HOH . 
F 5 HOH A 5 9005 9005 HOH HOH . 
F 5 HOH A 6 9006 9006 HOH HOH . 
F 5 HOH A 7 9007 9007 HOH HOH . 
F 5 HOH A 8 9008 9008 HOH HOH . 
F 5 HOH A 9 9009 9009 HOH HOH . 
F 5 HOH A 10 9010 9010 HOH HOH . 
F 5 HOH A 11 9011 9011 HOH HOH . 
F 5 HOH A 12 9012 9012 HOH HOH . 
F 5 HOH A 13 9013 9013 HOH HOH . 
F 5 HOH A 14 9014 9014 HOH HOH . 
F 5 HOH A 15 9015 9015 HOH HOH . 
F 5 HOH A 16 9016 9016 HOH HOH . 
F 5 HOH A 17 9017 9017 HOH HOH . 
F 5 HOH A 18 9018 9018 HOH HOH . 
F 5 HOH A 19 9019 9019 HOH HOH . 
F 5 HOH A 20 9020 9020 HOH HOH . 
F 5 HOH A 21 9021 9021 HOH HOH . 
F 5 HOH A 22 9022 9022 HOH HOH . 
F 5 HOH A 23 9023 9023 HOH HOH . 
F 5 HOH A 24 9024 9024 HOH HOH . 
F 5 HOH A 25 9025 9025 HOH HOH . 
F 5 HOH A 26 9026 9026 HOH HOH . 
F 5 HOH A 27 9027 9027 HOH HOH . 
F 5 HOH A 28 9028 9028 HOH HOH . 
F 5 HOH A 29 9029 9029 HOH HOH . 
F 5 HOH A 30 9030 9030 HOH HOH . 
F 5 HOH A 31 9031 9031 HOH HOH . 
F 5 HOH A 32 9032 9032 HOH HOH . 
F 5 HOH A 33 9033 9033 HOH HOH . 
F 5 HOH A 34 9034 9034 HOH HOH . 
F 5 HOH A 35 9035 9035 HOH HOH . 
F 5 HOH A 36 9036 9036 HOH HOH . 
F 5 HOH A 37 9037 9037 HOH HOH . 
F 5 HOH A 38 9038 9038 HOH HOH . 
F 5 HOH A 39 9039 9039 HOH HOH . 
F 5 HOH A 40 9040 9040 HOH HOH . 
F 5 HOH A 41 9041 9041 HOH HOH . 
F 5 HOH A 42 9042 9042 HOH HOH . 
F 5 HOH A 43 9043 9043 HOH HOH . 
F 5 HOH A 44 9044 9044 HOH HOH . 
F 5 HOH A 45 9045 9045 HOH HOH . 
F 5 HOH A 46 9046 9046 HOH HOH . 
F 5 HOH A 47 9047 9047 HOH HOH . 
F 5 HOH A 48 9048 9048 HOH HOH . 
F 5 HOH A 49 9049 9049 HOH HOH . 
F 5 HOH A 50 9050 9050 HOH HOH . 
F 5 HOH A 51 9051 9051 HOH HOH . 
F 5 HOH A 52 9052 9052 HOH HOH . 
F 5 HOH A 53 9053 9053 HOH HOH . 
F 5 HOH A 54 9054 9054 HOH HOH . 
F 5 HOH A 55 9055 9055 HOH HOH . 
F 5 HOH A 56 9056 9056 HOH HOH . 
F 5 HOH A 57 9057 9057 HOH HOH . 
F 5 HOH A 58 9058 9058 HOH HOH . 
F 5 HOH A 59 9059 9059 HOH HOH . 
F 5 HOH A 60 9060 9060 HOH HOH . 
F 5 HOH A 61 9061 9061 HOH HOH . 
F 5 HOH A 62 9062 9062 HOH HOH . 
F 5 HOH A 63 9063 9063 HOH HOH . 
F 5 HOH A 64 9064 9064 HOH HOH . 
F 5 HOH A 65 9065 9065 HOH HOH . 
F 5 HOH A 66 9066 9066 HOH HOH . 
F 5 HOH A 67 9067 9067 HOH HOH . 
F 5 HOH A 68 9068 9068 HOH HOH . 
F 5 HOH A 69 9069 9069 HOH HOH . 
F 5 HOH A 70 9070 9070 HOH HOH . 
F 5 HOH A 71 9071 9071 HOH HOH . 
F 5 HOH A 72 9072 9072 HOH HOH . 
F 5 HOH A 73 9073 9073 HOH HOH . 
F 5 HOH A 74 9074 9074 HOH HOH . 
F 5 HOH A 75 9075 9075 HOH HOH . 
F 5 HOH A 76 9076 9076 HOH HOH . 
F 5 HOH A 77 9077 9077 HOH HOH . 
F 5 HOH A 78 9079 9079 HOH HOH . 
F 5 HOH A 79 9080 9080 HOH HOH . 
F 5 HOH A 80 9081 9081 HOH HOH . 
F 5 HOH A 81 9082 9082 HOH HOH . 
F 5 HOH A 82 9084 9084 HOH HOH . 
F 5 HOH A 83 9085 9085 HOH HOH . 
F 5 HOH A 84 9086 9086 HOH HOH . 
F 5 HOH A 85 9087 9087 HOH HOH . 
F 5 HOH A 86 9088 9088 HOH HOH . 
F 5 HOH A 87 9089 9089 HOH HOH . 
F 5 HOH A 88 9090 9090 HOH HOH . 
F 5 HOH A 89 9091 9091 HOH HOH . 
F 5 HOH A 90 9092 9092 HOH HOH . 
F 5 HOH A 91 9093 9093 HOH HOH . 
F 5 HOH A 92 9094 9094 HOH HOH . 
F 5 HOH A 93 9096 9096 HOH HOH . 
F 5 HOH A 94 9097 9097 HOH HOH . 
F 5 HOH A 95 9098 9098 HOH HOH . 
F 5 HOH A 96 9099 9099 HOH HOH . 
F 5 HOH A 97 9100 9100 HOH HOH . 
F 5 HOH A 98 9101 9101 HOH HOH . 
F 5 HOH A 99 9102 9102 HOH HOH . 
F 5 HOH A 100 9104 9104 HOH HOH . 
F 5 HOH A 101 9105 9105 HOH HOH . 
F 5 HOH A 102 9106 9106 HOH HOH . 
F 5 HOH A 103 9107 9107 HOH HOH . 
F 5 HOH A 104 9108 9108 HOH HOH . 
F 5 HOH A 105 9109 9109 HOH HOH . 
F 5 HOH A 106 9110 9110 HOH HOH . 
F 5 HOH A 107 9111 9111 HOH HOH . 
F 5 HOH A 108 9112 9112 HOH HOH . 
F 5 HOH A 109 9113 9113 HOH HOH . 
F 5 HOH A 110 9114 9114 HOH HOH . 
F 5 HOH A 111 9115 9115 HOH HOH . 
F 5 HOH A 112 9116 9116 HOH HOH . 
F 5 HOH A 113 9117 9117 HOH HOH . 
F 5 HOH A 114 9118 9118 HOH HOH . 
F 5 HOH A 115 9119 9119 HOH HOH . 
F 5 HOH A 116 9120 9120 HOH HOH . 
F 5 HOH A 117 9121 9121 HOH HOH . 
F 5 HOH A 118 9122 9122 HOH HOH . 
F 5 HOH A 119 9123 9123 HOH HOH . 
F 5 HOH A 120 9124 9124 HOH HOH . 
F 5 HOH A 121 9125 9125 HOH HOH . 
F 5 HOH A 122 9126 9126 HOH HOH . 
F 5 HOH A 123 9127 9127 HOH HOH . 
F 5 HOH A 124 9128 9128 HOH HOH . 
F 5 HOH A 125 9129 9129 HOH HOH . 
F 5 HOH A 126 9130 9130 HOH HOH . 
F 5 HOH A 127 9131 9131 HOH HOH . 
F 5 HOH A 128 9132 9132 HOH HOH . 
F 5 HOH A 129 9133 9133 HOH HOH . 
F 5 HOH A 130 9134 9134 HOH HOH . 
F 5 HOH A 131 9135 9135 HOH HOH . 
F 5 HOH A 132 9136 9136 HOH HOH . 
F 5 HOH A 133 9137 9137 HOH HOH . 
F 5 HOH A 134 9138 9138 HOH HOH . 
F 5 HOH A 135 9139 9139 HOH HOH . 
F 5 HOH A 136 9140 9140 HOH HOH . 
F 5 HOH A 137 9141 9141 HOH HOH . 
F 5 HOH A 138 9142 9142 HOH HOH . 
F 5 HOH A 139 9143 9143 HOH HOH . 
F 5 HOH A 140 9144 9144 HOH HOH . 
F 5 HOH A 141 9145 9145 HOH HOH . 
F 5 HOH A 142 9146 9146 HOH HOH . 
F 5 HOH A 143 9147 9147 HOH HOH . 
F 5 HOH A 144 9148 9148 HOH HOH . 
F 5 HOH A 145 9152 9152 HOH HOH . 
F 5 HOH A 146 9153 9153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               21.963 
_atom_site.Cartn_y               47.098 
_atom_site.Cartn_z               17.36 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           3333 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#