data_1YQE # _model_server_result.job_id deORwQs5AqtDMipN0xea3w _model_server_result.datetime_utc '2025-03-05 19:26:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3000}' # _entry.id 1YQE # _exptl.entry_id 1YQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YQE _cell.length_a 36.294 _cell.length_b 73.787 _cell.length_c 99.232 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 260 n n P1 O2 POP sing 261 n n P1 O3 POP sing 262 n n P1 O POP sing 263 n n O2 HO2 POP sing 264 n n O P2 POP sing 265 n n P2 O4 POP doub 266 n n P2 O5 POP sing 267 n n P2 O6 POP sing 268 n n O5 HO5 POP sing 269 n n # _atom_sites.entry_id 1YQE _atom_sites.fract_transf_matrix[1][1] 0.027553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 POP A 1 3000 3000 POP POP . C 3 HOH A 1 4000 4000 HOH TIP . C 3 HOH A 2 4001 4001 HOH TIP . C 3 HOH A 3 4002 4002 HOH TIP . C 3 HOH A 4 4003 4003 HOH TIP . C 3 HOH A 5 4004 4004 HOH TIP . C 3 HOH A 6 4005 4005 HOH TIP . C 3 HOH A 7 4006 4006 HOH TIP . C 3 HOH A 8 4007 4007 HOH TIP . C 3 HOH A 9 4008 4008 HOH TIP . C 3 HOH A 10 4009 4009 HOH TIP . C 3 HOH A 11 4010 4010 HOH TIP . C 3 HOH A 12 4011 4011 HOH TIP . C 3 HOH A 13 4012 4012 HOH TIP . C 3 HOH A 14 4013 4013 HOH TIP . C 3 HOH A 15 4014 4014 HOH TIP . C 3 HOH A 16 4015 4015 HOH TIP . C 3 HOH A 17 4016 4016 HOH TIP . C 3 HOH A 18 4017 4017 HOH TIP . C 3 HOH A 19 4018 4018 HOH TIP . C 3 HOH A 20 4019 4019 HOH TIP . C 3 HOH A 21 4020 4020 HOH TIP . C 3 HOH A 22 4021 4021 HOH TIP . C 3 HOH A 23 4022 4022 HOH TIP . C 3 HOH A 24 4023 4023 HOH TIP . C 3 HOH A 25 4024 4024 HOH TIP . C 3 HOH A 26 4025 4025 HOH TIP . C 3 HOH A 27 4026 4026 HOH TIP . C 3 HOH A 28 4027 4027 HOH TIP . C 3 HOH A 29 4028 4028 HOH TIP . C 3 HOH A 30 4029 4029 HOH TIP . C 3 HOH A 31 4030 4030 HOH TIP . C 3 HOH A 32 4031 4031 HOH TIP . C 3 HOH A 33 4032 4032 HOH TIP . C 3 HOH A 34 4033 4033 HOH TIP . C 3 HOH A 35 4034 4034 HOH TIP . C 3 HOH A 36 4035 4035 HOH TIP . C 3 HOH A 37 4036 4036 HOH TIP . C 3 HOH A 38 4037 4037 HOH TIP . C 3 HOH A 39 4038 4038 HOH TIP . C 3 HOH A 40 4039 4039 HOH TIP . C 3 HOH A 41 4040 4040 HOH TIP . C 3 HOH A 42 4041 4041 HOH TIP . C 3 HOH A 43 4042 4042 HOH TIP . C 3 HOH A 44 4043 4043 HOH TIP . C 3 HOH A 45 4044 4044 HOH TIP . C 3 HOH A 46 4045 4045 HOH TIP . C 3 HOH A 47 4046 4046 HOH TIP . C 3 HOH A 48 4047 4047 HOH TIP . C 3 HOH A 49 4048 4048 HOH TIP . C 3 HOH A 50 4049 4049 HOH TIP . C 3 HOH A 51 4050 4050 HOH TIP . C 3 HOH A 52 4051 4051 HOH TIP . C 3 HOH A 53 4052 4052 HOH TIP . C 3 HOH A 54 4053 4053 HOH TIP . C 3 HOH A 55 4054 4054 HOH TIP . C 3 HOH A 56 4055 4055 HOH TIP . C 3 HOH A 57 4056 4056 HOH TIP . C 3 HOH A 58 4057 4057 HOH TIP . C 3 HOH A 59 4058 4058 HOH TIP . C 3 HOH A 60 4059 4059 HOH TIP . C 3 HOH A 61 4060 4060 HOH TIP . C 3 HOH A 62 4061 4061 HOH TIP . C 3 HOH A 63 4062 4062 HOH TIP . C 3 HOH A 64 4063 4063 HOH TIP . C 3 HOH A 65 4064 4064 HOH TIP . C 3 HOH A 66 4065 4065 HOH TIP . C 3 HOH A 67 4066 4066 HOH TIP . C 3 HOH A 68 4067 4067 HOH TIP . C 3 HOH A 69 4068 4068 HOH TIP . C 3 HOH A 70 4069 4069 HOH TIP . C 3 HOH A 71 4070 4070 HOH TIP . C 3 HOH A 72 4071 4071 HOH TIP . C 3 HOH A 73 4072 4072 HOH TIP . C 3 HOH A 74 4073 4073 HOH TIP . C 3 HOH A 75 4074 4074 HOH TIP . C 3 HOH A 76 4075 4075 HOH TIP . C 3 HOH A 77 4076 4076 HOH TIP . C 3 HOH A 78 4077 4077 HOH TIP . C 3 HOH A 79 4078 4078 HOH TIP . C 3 HOH A 80 4079 4079 HOH TIP . C 3 HOH A 81 4080 4080 HOH TIP . C 3 HOH A 82 4081 4081 HOH TIP . C 3 HOH A 83 4082 4082 HOH TIP . C 3 HOH A 84 4083 4083 HOH TIP . C 3 HOH A 85 4084 4084 HOH TIP . C 3 HOH A 86 4085 4085 HOH TIP . C 3 HOH A 87 4086 4086 HOH TIP . C 3 HOH A 88 4087 4087 HOH TIP . C 3 HOH A 89 4088 4088 HOH TIP . C 3 HOH A 90 4089 4089 HOH TIP . C 3 HOH A 91 4090 4090 HOH TIP . C 3 HOH A 92 4091 4091 HOH TIP . C 3 HOH A 93 4092 4092 HOH TIP . C 3 HOH A 94 4093 4093 HOH TIP . C 3 HOH A 95 4094 4094 HOH TIP . C 3 HOH A 96 4095 4095 HOH TIP . C 3 HOH A 97 4096 4096 HOH TIP . C 3 HOH A 98 4097 4097 HOH TIP . C 3 HOH A 99 4098 4098 HOH TIP . C 3 HOH A 100 4099 4099 HOH TIP . C 3 HOH A 101 4100 4100 HOH TIP . C 3 HOH A 102 4101 4101 HOH TIP . C 3 HOH A 103 4102 4102 HOH TIP . C 3 HOH A 104 4103 4103 HOH TIP . C 3 HOH A 105 4104 4104 HOH TIP . C 3 HOH A 106 4105 4105 HOH TIP . C 3 HOH A 107 4106 4106 HOH TIP . C 3 HOH A 108 4107 4107 HOH TIP . C 3 HOH A 109 4108 4108 HOH TIP . C 3 HOH A 110 4109 4109 HOH TIP . C 3 HOH A 111 4110 4110 HOH TIP . C 3 HOH A 112 4111 4111 HOH TIP . C 3 HOH A 113 4112 4112 HOH TIP . C 3 HOH A 114 4113 4113 HOH TIP . C 3 HOH A 115 4114 4114 HOH TIP . C 3 HOH A 116 4115 4115 HOH TIP . C 3 HOH A 117 4116 4116 HOH TIP . C 3 HOH A 118 4117 4117 HOH TIP . C 3 HOH A 119 4118 4118 HOH TIP . C 3 HOH A 120 4119 4119 HOH TIP . C 3 HOH A 121 4120 4120 HOH TIP . C 3 HOH A 122 4121 4121 HOH TIP . C 3 HOH A 123 4122 4122 HOH TIP . C 3 HOH A 124 4123 4123 HOH TIP . C 3 HOH A 125 4124 4124 HOH TIP . C 3 HOH A 126 4125 4125 HOH TIP . C 3 HOH A 127 4126 4126 HOH TIP . C 3 HOH A 128 4127 4127 HOH TIP . C 3 HOH A 129 4128 4128 HOH TIP . C 3 HOH A 130 4129 4129 HOH TIP . C 3 HOH A 131 4130 4130 HOH TIP . C 3 HOH A 132 4131 4131 HOH TIP . C 3 HOH A 133 4132 4132 HOH TIP . C 3 HOH A 134 4133 4133 HOH TIP . C 3 HOH A 135 4134 4134 HOH TIP . C 3 HOH A 136 4135 4135 HOH TIP . C 3 HOH A 137 4136 4136 HOH TIP . C 3 HOH A 138 4137 4137 HOH TIP . C 3 HOH A 139 4138 4138 HOH TIP . C 3 HOH A 140 4139 4139 HOH TIP . C 3 HOH A 141 4140 4140 HOH TIP . C 3 HOH A 142 4141 4141 HOH TIP . C 3 HOH A 143 4142 4142 HOH TIP . C 3 HOH A 144 4143 4143 HOH TIP . C 3 HOH A 145 4144 4144 HOH TIP . C 3 HOH A 146 4145 4145 HOH TIP . C 3 HOH A 147 4146 4146 HOH TIP . C 3 HOH A 148 4147 4147 HOH TIP . C 3 HOH A 149 4148 4148 HOH TIP . C 3 HOH A 150 4149 4149 HOH TIP . C 3 HOH A 151 4150 4150 HOH TIP . C 3 HOH A 152 4151 4151 HOH TIP . C 3 HOH A 153 4152 4152 HOH TIP . C 3 HOH A 154 4153 4153 HOH TIP . C 3 HOH A 155 4154 4154 HOH TIP . C 3 HOH A 156 4155 4155 HOH TIP . C 3 HOH A 157 4156 4156 HOH TIP . C 3 HOH A 158 4157 4157 HOH TIP . C 3 HOH A 159 4158 4158 HOH TIP . C 3 HOH A 160 4159 4159 HOH TIP . C 3 HOH A 161 4160 4160 HOH TIP . C 3 HOH A 162 4161 4161 HOH TIP . C 3 HOH A 163 4162 4162 HOH TIP . C 3 HOH A 164 4163 4163 HOH TIP . C 3 HOH A 165 4164 4164 HOH TIP . C 3 HOH A 166 4165 4165 HOH TIP . C 3 HOH A 167 4166 4166 HOH TIP . C 3 HOH A 168 4167 4167 HOH TIP . C 3 HOH A 169 4168 4168 HOH TIP . C 3 HOH A 170 4169 4169 HOH TIP . C 3 HOH A 171 4170 4170 HOH TIP . C 3 HOH A 172 4171 4171 HOH TIP . C 3 HOH A 173 4172 4172 HOH TIP . C 3 HOH A 174 4173 4173 HOH TIP . C 3 HOH A 175 4174 4174 HOH TIP . C 3 HOH A 176 4175 4175 HOH TIP . C 3 HOH A 177 4176 4176 HOH TIP . C 3 HOH A 178 4177 4177 HOH TIP . C 3 HOH A 179 4178 4178 HOH TIP . C 3 HOH A 180 4179 4179 HOH TIP . C 3 HOH A 181 4180 4180 HOH TIP . C 3 HOH A 182 4181 4181 HOH TIP . C 3 HOH A 183 4182 4182 HOH TIP . C 3 HOH A 184 4183 4183 HOH TIP . C 3 HOH A 185 4184 4184 HOH TIP . C 3 HOH A 186 4185 4185 HOH TIP . C 3 HOH A 187 4186 4186 HOH TIP . C 3 HOH A 188 4187 4187 HOH TIP . C 3 HOH A 189 4188 4188 HOH TIP . C 3 HOH A 190 4189 4189 HOH TIP . C 3 HOH A 191 4190 4190 HOH TIP . C 3 HOH A 192 4191 4191 HOH TIP . C 3 HOH A 193 4192 4192 HOH TIP . C 3 HOH A 194 4193 4193 HOH TIP . C 3 HOH A 195 4194 4194 HOH TIP . C 3 HOH A 196 4195 4195 HOH TIP . C 3 HOH A 197 4196 4196 HOH TIP . C 3 HOH A 198 4197 4197 HOH TIP . C 3 HOH A 199 4198 4198 HOH TIP . C 3 HOH A 200 4199 4199 HOH TIP . C 3 HOH A 201 4200 4200 HOH TIP . C 3 HOH A 202 4201 4201 HOH TIP . C 3 HOH A 203 4202 4202 HOH TIP . C 3 HOH A 204 4203 4203 HOH TIP . C 3 HOH A 205 4204 4204 HOH TIP . C 3 HOH A 206 4205 4205 HOH TIP . C 3 HOH A 207 4206 4206 HOH TIP . C 3 HOH A 208 4207 4207 HOH TIP . C 3 HOH A 209 4208 4208 HOH TIP . C 3 HOH A 210 4209 4209 HOH TIP . C 3 HOH A 211 4210 4210 HOH TIP . C 3 HOH A 212 4211 4211 HOH TIP . C 3 HOH A 213 4212 4212 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . B 2 20.902 30.871 23.375 1 83.03 ? P1 POP 3000 A 1 HETATM 2 O O1 POP . . . B 2 21.946 31.831 23.922 1 81.98 ? O1 POP 3000 A 1 HETATM 3 O O2 POP . . . B 2 20.085 30.323 24.551 1 82.26 ? O2 POP 3000 A 1 HETATM 4 O O3 POP . . . B 2 21.55 29.691 22.666 1 82.66 ? O3 POP 3000 A 1 HETATM 5 O O POP . . . B 2 19.813 31.644 22.386 1 82.09 ? O POP 3000 A 1 HETATM 6 P P2 POP . . . B 2 20.142 32.142 20.835 1 82.67 ? P2 POP 3000 A 1 HETATM 7 O O4 POP . . . B 2 21.574 31.918 20.429 1 81.93 ? O4 POP 3000 A 1 HETATM 8 O O5 POP . . . B 2 19.806 33.591 20.703 1 81.57 ? O5 POP 3000 A 1 HETATM 9 O O6 POP . . . B 2 19.093 31.297 19.954 1 82.05 ? O6 POP 3000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #