data_1YQJ # _model_server_result.job_id pRThQ7biSgq5-qgGL-YB6g _model_server_result.datetime_utc '2024-11-22 19:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 1YQJ # _exptl.entry_id 1YQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.569 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6((S)-3-BENZYLPIPERAZIN-1-YL)-3-(NAPHTHALEN-2-YL)-4-(PYRIDIN-4-YL)PYRAZINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YQJ _cell.length_a 45.574 _cell.length_b 87.474 _cell.length_c 122.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H27 N5' _chem_comp.formula_weight 457.569 _chem_comp.id 6NP _chem_comp.mon_nstd_flag . _chem_comp.name 6((S)-3-BENZYLPIPERAZIN-1-YL)-3-(NAPHTHALEN-2-YL)-4-(PYRIDIN-4-YL)PYRAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 6NP sing 1 n y C1 C4 6NP doub 2 n y C1 N4 6NP sing 3 n n N1 N2 6NP doub 4 n y N2 C2 6NP sing 5 n y C2 C3 6NP doub 6 n y C2 C17 6NP sing 7 n y C3 C5 6NP sing 8 n y C3 C4 6NP sing 9 n y C5 C6 6NP doub 10 n y C5 C9 6NP sing 11 n y C6 C7 6NP sing 12 n y C6 H6 6NP sing 13 n n C7 N3 6NP doub 14 n y C7 H7 6NP sing 15 n n N3 C8 6NP sing 16 n y C8 C9 6NP doub 17 n y C8 H8 6NP sing 18 n n C9 H9 6NP sing 19 n n C4 H4 6NP sing 20 n n C10 C16 6NP sing 21 n n C10 C27 6NP sing 22 n n C10 H101 6NP sing 23 n n C10 H102 6NP sing 24 n n C11 C12 6NP doub 25 n y C11 C16 6NP sing 26 n y C11 H11 6NP sing 27 n n C12 C13 6NP sing 28 n y C12 H12 6NP sing 29 n n C13 C14 6NP doub 30 n y C13 H13 6NP sing 31 n n C14 C15 6NP sing 32 n y C14 H14 6NP sing 33 n n C15 C16 6NP doub 34 n y C15 H15 6NP sing 35 n n C17 C18 6NP doub 36 n y C17 C22 6NP sing 37 n y C18 C19 6NP sing 38 n y C18 H18 6NP sing 39 n n C19 C20 6NP doub 40 n y C19 C23 6NP sing 41 n y C20 C21 6NP sing 42 n y C20 C26 6NP sing 43 n y C21 C22 6NP doub 44 n y C21 H21 6NP sing 45 n n C22 H22 6NP sing 46 n n C23 C24 6NP doub 47 n y C23 H23 6NP sing 48 n n C24 C25 6NP sing 49 n y C24 H24 6NP sing 50 n n C25 C26 6NP doub 51 n y C25 H25 6NP sing 52 n n C26 H26 6NP sing 53 n n C27 C28 6NP sing 54 n n C27 N5 6NP sing 55 n n C27 H27 6NP sing 56 n n C28 N4 6NP sing 57 n n C28 H281 6NP sing 58 n n C28 H282 6NP sing 59 n n N4 C29 6NP sing 60 n n C29 C30 6NP sing 61 n n C29 H291 6NP sing 62 n n C29 H292 6NP sing 63 n n C30 N5 6NP sing 64 n n C30 H301 6NP sing 65 n n C30 H302 6NP sing 66 n n N5 HN5 6NP sing 67 n n # _atom_sites.entry_id 1YQJ _atom_sites.fract_transf_matrix[1][1] 0.021942 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 361 1 SO4 SO4 . C 3 6NP A 1 362 1 6NP AMG . D 4 HOH A 1 363 1 HOH HOH . D 4 HOH A 2 364 2 HOH HOH . D 4 HOH A 3 365 3 HOH HOH . D 4 HOH A 4 366 4 HOH HOH . D 4 HOH A 5 367 5 HOH HOH . D 4 HOH A 6 368 6 HOH HOH . D 4 HOH A 7 369 7 HOH HOH . D 4 HOH A 8 370 8 HOH HOH . D 4 HOH A 9 371 9 HOH HOH . D 4 HOH A 10 372 10 HOH HOH . D 4 HOH A 11 373 11 HOH HOH . D 4 HOH A 12 374 12 HOH HOH . D 4 HOH A 13 375 13 HOH HOH . D 4 HOH A 14 376 14 HOH HOH . D 4 HOH A 15 377 15 HOH HOH . D 4 HOH A 16 378 16 HOH HOH . D 4 HOH A 17 379 17 HOH HOH . D 4 HOH A 18 380 18 HOH HOH . D 4 HOH A 19 381 19 HOH HOH . D 4 HOH A 20 382 20 HOH HOH . D 4 HOH A 21 383 21 HOH HOH . D 4 HOH A 22 384 22 HOH HOH . D 4 HOH A 23 385 23 HOH HOH . D 4 HOH A 24 386 24 HOH HOH . D 4 HOH A 25 387 25 HOH HOH . D 4 HOH A 26 388 26 HOH HOH . D 4 HOH A 27 389 27 HOH HOH . D 4 HOH A 28 390 28 HOH HOH . D 4 HOH A 29 391 29 HOH HOH . D 4 HOH A 30 392 30 HOH HOH . D 4 HOH A 31 393 31 HOH HOH . D 4 HOH A 32 394 32 HOH HOH . D 4 HOH A 33 395 33 HOH HOH . D 4 HOH A 34 396 34 HOH HOH . D 4 HOH A 35 397 35 HOH HOH . D 4 HOH A 36 398 36 HOH HOH . D 4 HOH A 37 399 37 HOH HOH . D 4 HOH A 38 400 38 HOH HOH . D 4 HOH A 39 401 39 HOH HOH . D 4 HOH A 40 402 40 HOH HOH . D 4 HOH A 41 403 41 HOH HOH . D 4 HOH A 42 404 42 HOH HOH . D 4 HOH A 43 405 43 HOH HOH . D 4 HOH A 44 406 44 HOH HOH . D 4 HOH A 45 407 45 HOH HOH . D 4 HOH A 46 408 46 HOH HOH . D 4 HOH A 47 409 47 HOH HOH . D 4 HOH A 48 410 48 HOH HOH . D 4 HOH A 49 411 49 HOH HOH . D 4 HOH A 50 412 50 HOH HOH . D 4 HOH A 51 413 51 HOH HOH . D 4 HOH A 52 414 52 HOH HOH . D 4 HOH A 53 415 53 HOH HOH . D 4 HOH A 54 416 54 HOH HOH . D 4 HOH A 55 417 55 HOH HOH . D 4 HOH A 56 418 56 HOH HOH . D 4 HOH A 57 419 57 HOH HOH . D 4 HOH A 58 420 58 HOH HOH . D 4 HOH A 59 421 59 HOH HOH . D 4 HOH A 60 422 60 HOH HOH . D 4 HOH A 61 423 61 HOH HOH . D 4 HOH A 62 424 62 HOH HOH . D 4 HOH A 63 425 63 HOH HOH . D 4 HOH A 64 426 64 HOH HOH . D 4 HOH A 65 427 65 HOH HOH . D 4 HOH A 66 428 66 HOH HOH . D 4 HOH A 67 429 67 HOH HOH . D 4 HOH A 68 430 68 HOH HOH . D 4 HOH A 69 431 69 HOH HOH . D 4 HOH A 70 432 70 HOH HOH . D 4 HOH A 71 433 71 HOH HOH . D 4 HOH A 72 434 72 HOH HOH . D 4 HOH A 73 435 73 HOH HOH . D 4 HOH A 74 436 74 HOH HOH . D 4 HOH A 75 437 75 HOH HOH . D 4 HOH A 76 438 76 HOH HOH . D 4 HOH A 77 439 77 HOH HOH . D 4 HOH A 78 440 78 HOH HOH . D 4 HOH A 79 441 79 HOH HOH . D 4 HOH A 80 442 80 HOH HOH . D 4 HOH A 81 443 81 HOH HOH . D 4 HOH A 82 444 82 HOH HOH . D 4 HOH A 83 445 83 HOH HOH . D 4 HOH A 84 446 84 HOH HOH . D 4 HOH A 85 447 85 HOH HOH . D 4 HOH A 86 448 86 HOH HOH . D 4 HOH A 87 449 87 HOH HOH . D 4 HOH A 88 450 88 HOH HOH . D 4 HOH A 89 451 89 HOH HOH . D 4 HOH A 90 452 90 HOH HOH . D 4 HOH A 91 453 91 HOH HOH . D 4 HOH A 92 454 92 HOH HOH . D 4 HOH A 93 455 93 HOH HOH . D 4 HOH A 94 456 94 HOH HOH . D 4 HOH A 95 457 95 HOH HOH . D 4 HOH A 96 458 96 HOH HOH . D 4 HOH A 97 459 97 HOH HOH . D 4 HOH A 98 460 98 HOH HOH . D 4 HOH A 99 461 99 HOH HOH . D 4 HOH A 100 462 100 HOH HOH . D 4 HOH A 101 463 101 HOH HOH . D 4 HOH A 102 464 102 HOH HOH . D 4 HOH A 103 465 103 HOH HOH . D 4 HOH A 104 466 104 HOH HOH . D 4 HOH A 105 467 105 HOH HOH . D 4 HOH A 106 468 106 HOH HOH . D 4 HOH A 107 469 107 HOH HOH . D 4 HOH A 108 470 108 HOH HOH . D 4 HOH A 109 471 109 HOH HOH . D 4 HOH A 110 472 110 HOH HOH . D 4 HOH A 111 473 111 HOH HOH . D 4 HOH A 112 474 112 HOH HOH . D 4 HOH A 113 475 113 HOH HOH . D 4 HOH A 114 476 114 HOH HOH . D 4 HOH A 115 477 115 HOH HOH . D 4 HOH A 116 478 116 HOH HOH . D 4 HOH A 117 479 117 HOH HOH . D 4 HOH A 118 480 118 HOH HOH . D 4 HOH A 119 481 119 HOH HOH . D 4 HOH A 120 482 120 HOH HOH . D 4 HOH A 121 483 121 HOH HOH . D 4 HOH A 122 484 122 HOH HOH . D 4 HOH A 123 485 123 HOH HOH . D 4 HOH A 124 486 124 HOH HOH . D 4 HOH A 125 487 125 HOH HOH . D 4 HOH A 126 488 126 HOH HOH . D 4 HOH A 127 489 127 HOH HOH . D 4 HOH A 128 490 128 HOH HOH . D 4 HOH A 129 491 129 HOH HOH . D 4 HOH A 130 492 130 HOH HOH . D 4 HOH A 131 493 131 HOH HOH . D 4 HOH A 132 494 132 HOH HOH . D 4 HOH A 133 495 133 HOH HOH . D 4 HOH A 134 496 134 HOH HOH . D 4 HOH A 135 497 135 HOH HOH . D 4 HOH A 136 498 136 HOH HOH . D 4 HOH A 137 499 137 HOH HOH . D 4 HOH A 138 500 138 HOH HOH . D 4 HOH A 139 501 139 HOH HOH . D 4 HOH A 140 502 140 HOH HOH . D 4 HOH A 141 503 141 HOH HOH . D 4 HOH A 142 504 142 HOH HOH . D 4 HOH A 143 505 143 HOH HOH . D 4 HOH A 144 506 144 HOH HOH . D 4 HOH A 145 507 145 HOH HOH . D 4 HOH A 146 508 146 HOH HOH . D 4 HOH A 147 509 147 HOH HOH . D 4 HOH A 148 510 148 HOH HOH . D 4 HOH A 149 511 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6NP . . . C 3 23.643 14.929 32.101 1 26.45 ? C1 6NP 362 A 1 HETATM 2 N N1 6NP . . . C 3 22.471 15.633 32.196 1 24.23 ? N1 6NP 362 A 1 HETATM 3 N N2 6NP . . . C 3 21.314 14.948 32.296 1 27.16 ? N2 6NP 362 A 1 HETATM 4 C C2 6NP . . . C 3 21.182 13.571 32.315 1 24.03 ? C2 6NP 362 A 1 HETATM 5 C C3 6NP . . . C 3 22.479 12.769 32.212 1 20.29 ? C3 6NP 362 A 1 HETATM 6 C C5 6NP . . . C 3 22.531 11.251 32.218 1 17.42 ? C5 6NP 362 A 1 HETATM 7 C C6 6NP . . . C 3 23.223 10.561 33.237 1 11.87 ? C6 6NP 362 A 1 HETATM 8 C C7 6NP . . . C 3 23.249 9.152 33.226 1 11.83 ? C7 6NP 362 A 1 HETATM 9 N N3 6NP . . . C 3 22.627 8.409 32.265 1 21.48 ? N3 6NP 362 A 1 HETATM 10 C C8 6NP . . . C 3 21.956 9.069 31.275 1 19.08 ? C8 6NP 362 A 1 HETATM 11 C C9 6NP . . . C 3 21.888 10.473 31.218 1 20.1 ? C9 6NP 362 A 1 HETATM 12 C C4 6NP . . . C 3 23.657 13.507 32.108 1 21.62 ? C4 6NP 362 A 1 HETATM 13 C C10 6NP . . . C 3 27.87 13.963 30.408 1 20.86 ? C10 6NP 362 A 1 HETATM 14 C C11 6NP . . . C 3 26.824 11.731 29.729 1 21.97 ? C11 6NP 362 A 1 HETATM 15 C C12 6NP . . . C 3 26.555 10.36 29.957 1 20.92 ? C12 6NP 362 A 1 HETATM 16 C C13 6NP . . . C 3 27.048 9.734 31.122 1 23.12 ? C13 6NP 362 A 1 HETATM 17 C C14 6NP . . . C 3 27.814 10.48 32.057 1 25.75 ? C14 6NP 362 A 1 HETATM 18 C C15 6NP . . . C 3 28.083 11.851 31.827 1 21.72 ? C15 6NP 362 A 1 HETATM 19 C C16 6NP . . . C 3 27.591 12.493 30.662 1 23.48 ? C16 6NP 362 A 1 HETATM 20 C C17 6NP . . . C 3 19.81 12.961 32.427 1 21.57 ? C17 6NP 362 A 1 HETATM 21 C C18 6NP . . . C 3 18.884 13.141 31.37 1 16.85 ? C18 6NP 362 A 1 HETATM 22 C C19 6NP . . . C 3 17.585 12.541 31.454 1 17.77 ? C19 6NP 362 A 1 HETATM 23 C C20 6NP . . . C 3 17.21 11.748 32.614 1 16.08 ? C20 6NP 362 A 1 HETATM 24 C C21 6NP . . . C 3 18.148 11.583 33.666 1 17.2 ? C21 6NP 362 A 1 HETATM 25 C C22 6NP . . . C 3 19.429 12.185 33.564 1 18.44 ? C22 6NP 362 A 1 HETATM 26 C C23 6NP . . . C 3 16.648 12.713 30.386 1 17.93 ? C23 6NP 362 A 1 HETATM 27 C C24 6NP . . . C 3 15.362 12.102 30.471 1 16.22 ? C24 6NP 362 A 1 HETATM 28 C C25 6NP . . . C 3 15.003 11.325 31.611 1 12.27 ? C25 6NP 362 A 1 HETATM 29 C C26 6NP . . . C 3 15.917 11.143 32.688 1 16.25 ? C26 6NP 362 A 1 HETATM 30 C C27 6NP . . . C 3 26.602 14.818 30.559 1 20.83 ? C27 6NP 362 A 1 HETATM 31 C C28 6NP . . . C 3 26.172 15.05 32.023 1 22.13 ? C28 6NP 362 A 1 HETATM 32 N N4 6NP . . . C 3 24.832 15.681 31.989 1 23.69 ? N4 6NP 362 A 1 HETATM 33 C C29 6NP . . . C 3 24.796 17.003 31.304 1 21.77 ? C29 6NP 362 A 1 HETATM 34 C C30 6NP . . . C 3 25.425 16.889 29.889 1 19.05 ? C30 6NP 362 A 1 HETATM 35 N N5 6NP . . . C 3 26.705 16.13 29.882 1 23.27 ? N5 6NP 362 A 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #