data_1YQK
#
_model_server_result.job_id            FMoaleuTIl4J1_W2rjrMag 
_model_server_result.datetime_utc      '2024-12-24 13:48:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":328}' 
#
_entry.id    1YQK 
#
_exptl.entry_id    1YQK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YQK 
_cell.length_a            92.358 
_cell.length_b            92.358 
_cell.length_c            211.312 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YQK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OP1 DC 6 C DC 26 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc2 B OP2 DC 6 C DC 26 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
metalc ? metalc3 C O CYS 233 A CYS 241 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc4 C O LEU 235 A LEU 243 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc5 C O VAL 238 A VAL 246 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
hydrog WATSON-CRICK hydrog1 A N1 DG 2 B DG 2 1_555 B N3 DC 9 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 2 B DG 2 1_555 B O2 DC 9 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 2 B DG 2 1_555 B N4 DC 9 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DT 3 B DT 3 1_555 B N1 DA 8 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O4 DT 3 B DT 3 1_555 B N6 DA 8 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DT PAIR' hydrog6 A N6 DA 4 B DA 4 1_555 B O4 DT 7 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DG 5 B DG 5 1_555 B N3 DC 6 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 DG 5 B DG 5 1_555 B O2 DC 6 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 DG 5 B DG 5 1_555 B N4 DC 6 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DA 6 B DA 6 1_555 B N3 DT 5 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N6 DA 6 B DA 6 1_555 B O4 DT 5 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 DC 7 B DC 7 1_555 B N1 DG 4 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N4 DC 7 B DC 7 1_555 B O6 DG 4 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O2 DC 7 B DC 7 1_555 B N2 DG 4 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N3 DT 9 B DT 9 1_555 B N1 DA 2 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O4 DT 9 B DT 9 1_555 B N6 DA 2 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N1 DG 10 B DG 10 1_555 B N3 DC 1 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N2 DG 10 B DG 10 1_555 B O2 DC 1 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A O6 DG 10 B DG 10 1_555 B N4 DC 1 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YQK 
_atom_sites.fract_transf_matrix[1][1]    0.010827 
_atom_sites.fract_transf_matrix[1][2]    0.006251 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004732 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 328 1 CA CA2 . 
E 5 GOL A 1 329 1 GOL GOL . 
F 6 HOH B 1 32 32 HOH HOH . 
F 6 HOH B 2 46 46 HOH HOH . 
G 6 HOH C 1 61 61 HOH HOH . 
G 6 HOH C 2 62 62 HOH HOH . 
H 6 HOH A 1 330 1 HOH HOH . 
H 6 HOH A 2 331 2 HOH HOH . 
H 6 HOH A 3 332 4 HOH HOH . 
H 6 HOH A 4 333 5 HOH HOH . 
H 6 HOH A 5 334 6 HOH HOH . 
H 6 HOH A 6 335 8 HOH HOH . 
H 6 HOH A 7 336 9 HOH HOH . 
H 6 HOH A 8 337 10 HOH HOH . 
H 6 HOH A 9 338 11 HOH HOH . 
H 6 HOH A 10 339 12 HOH HOH . 
H 6 HOH A 11 340 13 HOH HOH . 
H 6 HOH A 12 341 14 HOH HOH . 
H 6 HOH A 13 342 17 HOH HOH . 
H 6 HOH A 14 343 19 HOH HOH . 
H 6 HOH A 15 344 20 HOH HOH . 
H 6 HOH A 16 345 21 HOH HOH . 
H 6 HOH A 17 346 22 HOH HOH . 
H 6 HOH A 18 347 23 HOH HOH . 
H 6 HOH A 19 348 24 HOH HOH . 
H 6 HOH A 20 349 25 HOH HOH . 
H 6 HOH A 21 350 26 HOH HOH . 
H 6 HOH A 22 351 28 HOH HOH . 
H 6 HOH A 23 352 30 HOH HOH . 
H 6 HOH A 24 353 31 HOH HOH . 
H 6 HOH A 25 354 33 HOH HOH . 
H 6 HOH A 26 355 35 HOH HOH . 
H 6 HOH A 27 356 37 HOH HOH . 
H 6 HOH A 28 357 38 HOH HOH . 
H 6 HOH A 29 358 39 HOH HOH . 
H 6 HOH A 30 359 40 HOH HOH . 
H 6 HOH A 31 360 41 HOH HOH . 
H 6 HOH A 32 361 42 HOH HOH . 
H 6 HOH A 33 362 43 HOH HOH . 
H 6 HOH A 34 363 44 HOH HOH . 
H 6 HOH A 35 364 45 HOH HOH . 
H 6 HOH A 36 365 47 HOH HOH . 
H 6 HOH A 37 366 48 HOH HOH . 
H 6 HOH A 38 367 49 HOH HOH . 
H 6 HOH A 39 368 51 HOH HOH . 
H 6 HOH A 40 369 53 HOH HOH . 
H 6 HOH A 41 370 54 HOH HOH . 
H 6 HOH A 42 371 55 HOH HOH . 
H 6 HOH A 43 372 56 HOH HOH . 
H 6 HOH A 44 373 57 HOH HOH . 
H 6 HOH A 45 374 58 HOH HOH . 
H 6 HOH A 46 375 59 HOH HOH . 
H 6 HOH A 47 376 60 HOH HOH . 
H 6 HOH A 48 377 64 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               6.756 
_atom_site.Cartn_y               29.571 
_atom_site.Cartn_z               40.519 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        83.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           328 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#