data_1YQM
#
_model_server_result.job_id            8cuIyr7RL8CxZoVAoqr1gw 
_model_server_result.datetime_utc      '2024-11-15 01:59:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yqm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":328}' 
#
_entry.id    1YQM 
#
_exptl.entry_id    1YQM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YQM 
_cell.length_a            92.508 
_cell.length_b            92.508 
_cell.length_c            210.649 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YQM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DA 5 C DA 22 1_555 B P 7GU 6 C 7GU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale2 B O3' 7GU 6 C 7GU 23 1_555 B P DG 7 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
metalc ? metalc1 B OP1 DG 7 C DG 24 1_555 D CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc2 B OP2 DG 7 C DG 24 1_555 D CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
metalc ? metalc3 B OP2 DC 9 C DC 26 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? 
metalc ? metalc4 B OP1 DC 9 C DC 26 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc5 C O CYS 233 A CYS 241 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc6 C O LEU 235 A LEU 243 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc7 C O VAL 238 A VAL 246 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
hydrog WATSON-CRICK hydrog1 A N1 DG 2 B DG 2 1_555 B N3 DC 12 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 2 B DG 2 1_555 B O2 DC 12 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 2 B DG 2 1_555 B N4 DC 12 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DT 3 B DT 3 1_555 B N1 DA 11 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O4 DT 3 B DT 3 1_555 B N6 DA 11 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 DA 4 B DA 4 1_555 B N3 DT 10 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 DA 4 B DA 4 1_555 B O4 DT 10 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N1 DG 5 B DG 5 1_555 B N3 DC 9 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N2 DG 5 B DG 5 1_555 B O2 DC 9 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O6 DG 5 B DG 5 1_555 B N4 DC 9 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N1 DA 6 B DA 6 1_555 B N3 DT 8 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N6 DA 6 B DA 6 1_555 B O4 DT 8 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DC 7 B DC 7 1_555 B N1 DG 7 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 DC 7 B DC 7 1_555 B O6 DG 7 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 DC 7 B DC 7 1_555 B N2 DG 7 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 DT 9 B DT 9 1_555 B N1 DA 5 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O4 DT 9 B DT 9 1_555 B N6 DA 5 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N1 DG 10 B DG 10 1_555 B N3 DC 4 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N2 DG 10 B DG 10 1_555 B O2 DC 4 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O6 DG 10 B DG 10 1_555 B N4 DC 4 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog21 A N1 DG 11 B DG 11 1_555 B N3 DC 3 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N1 DA 12 B DA 12 1_555 B N3 DT 2 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N6 DA 12 B DA 12 1_555 B O4 DT 2 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 DC 13 B DC 13 1_555 B N1 DG 1 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N4 DC 13 B DC 13 1_555 B O6 DG 1 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O2 DC 13 B DC 13 1_555 B N2 DG 1 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YQM 
_atom_sites.fract_transf_matrix[1][1]    0.01081 
_atom_sites.fract_transf_matrix[1][2]    0.006241 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA C 1 201 1 CA CA2 . 
E 4 CA A 1 328 2 CA CA2 . 
F 5 HOH B 1 41 41 HOH HOH . 
G 5 HOH C 1 202 21 HOH HOH . 
G 5 HOH C 2 203 35 HOH HOH . 
G 5 HOH C 3 204 80 HOH HOH . 
G 5 HOH C 4 205 105 HOH HOH . 
G 5 HOH C 5 206 110 HOH HOH . 
H 5 HOH A 1 329 1 HOH HOH . 
H 5 HOH A 2 330 3 HOH HOH . 
H 5 HOH A 3 331 4 HOH HOH . 
H 5 HOH A 4 332 5 HOH HOH . 
H 5 HOH A 5 333 6 HOH HOH . 
H 5 HOH A 6 334 7 HOH HOH . 
H 5 HOH A 7 335 8 HOH HOH . 
H 5 HOH A 8 336 9 HOH HOH . 
H 5 HOH A 9 337 10 HOH HOH . 
H 5 HOH A 10 338 11 HOH HOH . 
H 5 HOH A 11 339 12 HOH HOH . 
H 5 HOH A 12 340 13 HOH HOH . 
H 5 HOH A 13 341 14 HOH HOH . 
H 5 HOH A 14 342 15 HOH HOH . 
H 5 HOH A 15 343 16 HOH HOH . 
H 5 HOH A 16 344 17 HOH HOH . 
H 5 HOH A 17 345 18 HOH HOH . 
H 5 HOH A 18 346 19 HOH HOH . 
H 5 HOH A 19 347 20 HOH HOH . 
H 5 HOH A 20 348 22 HOH HOH . 
H 5 HOH A 21 349 23 HOH HOH . 
H 5 HOH A 22 350 24 HOH HOH . 
H 5 HOH A 23 351 25 HOH HOH . 
H 5 HOH A 24 352 26 HOH HOH . 
H 5 HOH A 25 353 27 HOH HOH . 
H 5 HOH A 26 354 28 HOH HOH . 
H 5 HOH A 27 355 29 HOH HOH . 
H 5 HOH A 28 356 30 HOH HOH . 
H 5 HOH A 29 357 31 HOH HOH . 
H 5 HOH A 30 358 32 HOH HOH . 
H 5 HOH A 31 359 33 HOH HOH . 
H 5 HOH A 32 360 34 HOH HOH . 
H 5 HOH A 33 361 36 HOH HOH . 
H 5 HOH A 34 362 37 HOH HOH . 
H 5 HOH A 35 363 38 HOH HOH . 
H 5 HOH A 36 364 39 HOH HOH . 
H 5 HOH A 37 365 42 HOH HOH . 
H 5 HOH A 38 366 43 HOH HOH . 
H 5 HOH A 39 367 44 HOH HOH . 
H 5 HOH A 40 368 45 HOH HOH . 
H 5 HOH A 41 369 46 HOH HOH . 
H 5 HOH A 42 370 47 HOH HOH . 
H 5 HOH A 43 371 48 HOH HOH . 
H 5 HOH A 44 372 49 HOH HOH . 
H 5 HOH A 45 373 50 HOH HOH . 
H 5 HOH A 46 374 51 HOH HOH . 
H 5 HOH A 47 375 52 HOH HOH . 
H 5 HOH A 48 376 53 HOH HOH . 
H 5 HOH A 49 377 54 HOH HOH . 
H 5 HOH A 50 378 55 HOH HOH . 
H 5 HOH A 51 379 56 HOH HOH . 
H 5 HOH A 52 380 57 HOH HOH . 
H 5 HOH A 53 381 58 HOH HOH . 
H 5 HOH A 54 382 59 HOH HOH . 
H 5 HOH A 55 383 60 HOH HOH . 
H 5 HOH A 56 384 61 HOH HOH . 
H 5 HOH A 57 385 62 HOH HOH . 
H 5 HOH A 58 386 65 HOH HOH . 
H 5 HOH A 59 387 66 HOH HOH . 
H 5 HOH A 60 388 67 HOH HOH . 
H 5 HOH A 61 389 68 HOH HOH . 
H 5 HOH A 62 390 69 HOH HOH . 
H 5 HOH A 63 391 70 HOH HOH . 
H 5 HOH A 64 392 72 HOH HOH . 
H 5 HOH A 65 393 74 HOH HOH . 
H 5 HOH A 66 394 75 HOH HOH . 
H 5 HOH A 67 395 76 HOH HOH . 
H 5 HOH A 68 396 78 HOH HOH . 
H 5 HOH A 69 397 79 HOH HOH . 
H 5 HOH A 70 398 83 HOH HOH . 
H 5 HOH A 71 399 84 HOH HOH . 
H 5 HOH A 72 400 88 HOH HOH . 
H 5 HOH A 73 401 94 HOH HOH . 
H 5 HOH A 74 402 101 HOH HOH . 
H 5 HOH A 75 403 102 HOH HOH . 
H 5 HOH A 76 404 103 HOH HOH . 
H 5 HOH A 77 405 104 HOH HOH . 
H 5 HOH A 78 406 106 HOH HOH . 
H 5 HOH A 79 407 107 HOH HOH . 
H 5 HOH A 80 408 108 HOH HOH . 
H 5 HOH A 81 409 109 HOH HOH . 
H 5 HOH A 82 410 111 HOH HOH . 
H 5 HOH A 83 411 112 HOH HOH . 
H 5 HOH A 84 412 113 HOH HOH . 
H 5 HOH A 85 413 114 HOH HOH . 
H 5 HOH A 86 414 115 HOH HOH . 
H 5 HOH A 87 415 116 HOH HOH . 
H 5 HOH A 88 416 117 HOH HOH . 
H 5 HOH A 89 417 118 HOH HOH . 
H 5 HOH A 90 418 119 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               6.314 
_atom_site.Cartn_y               29.998 
_atom_site.Cartn_z               40.173 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        60.31 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           328 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#