data_1YQQ
#
_model_server_result.job_id            iDXocuVofk1TbHUaAdQjJA 
_model_server_result.datetime_utc      '2024-11-25 11:34:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    1YQQ 
#
_exptl.entry_id    1YQQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              151.126 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YQQ 
_cell.length_a            98.531 
_cell.length_b            116.633 
_cell.length_c            73.423 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PQS trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 98.531 116.633 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
_chem_comp.formula           'C5 H5 N5 O' 
_chem_comp.formula_weight    151.126 
_chem_comp.id                GUN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C8 GUN sing 129 n y 
N9 C4 GUN sing 130 n y 
N9 HN9 GUN sing 131 n n 
C8 N7 GUN doub 132 n y 
C8 H8 GUN sing 133 n n 
N7 C5 GUN sing 134 n y 
C5 C6 GUN sing 135 n n 
C5 C4 GUN doub 136 n y 
C6 O6 GUN doub 137 n n 
C6 N1 GUN sing 138 n n 
N1 C2 GUN sing 139 n n 
N1 HN1 GUN sing 140 n n 
C2 N2 GUN sing 141 n n 
C2 N3 GUN doub 142 n n 
N2 HN21 GUN sing 143 n n 
N2 HN22 GUN sing 144 n n 
N3 C4 GUN sing 145 n n 
#
_atom_sites.entry_id                     1YQQ 
_atom_sites.fract_transf_matrix[1][1]    0.010149 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PO4 A 1 500 500 PO4 IPS . 
E 3 GUN A 1 400 400 GUN GUN . 
F 2 PO4 B 1 1500 500 PO4 IPS . 
G 3 GUN B 1 1400 400 GUN GUN . 
H 2 PO4 C 1 2500 500 PO4 IPS . 
I 3 GUN C 1 2400 400 GUN GUN . 
J 4 HOH A 1 501 5 HOH TIP . 
J 4 HOH A 2 502 8 HOH TIP . 
J 4 HOH A 3 503 19 HOH TIP . 
J 4 HOH A 4 504 21 HOH TIP . 
J 4 HOH A 5 505 31 HOH TIP . 
J 4 HOH A 6 506 40 HOH TIP . 
J 4 HOH A 7 507 42 HOH TIP . 
J 4 HOH A 8 508 43 HOH TIP . 
J 4 HOH A 9 509 44 HOH TIP . 
J 4 HOH A 10 510 47 HOH TIP . 
J 4 HOH A 11 511 53 HOH TIP . 
J 4 HOH A 12 512 54 HOH TIP . 
J 4 HOH A 13 513 60 HOH TIP . 
J 4 HOH A 14 514 61 HOH TIP . 
J 4 HOH A 15 515 62 HOH TIP . 
J 4 HOH A 16 516 65 HOH TIP . 
J 4 HOH A 17 517 66 HOH TIP . 
J 4 HOH A 18 518 68 HOH TIP . 
J 4 HOH A 19 519 69 HOH TIP . 
J 4 HOH A 20 520 72 HOH TIP . 
J 4 HOH A 21 521 75 HOH TIP . 
J 4 HOH A 22 522 76 HOH TIP . 
J 4 HOH A 23 523 77 HOH TIP . 
J 4 HOH A 24 524 82 HOH TIP . 
J 4 HOH A 25 525 86 HOH TIP . 
J 4 HOH A 26 526 89 HOH TIP . 
J 4 HOH A 27 527 93 HOH TIP . 
J 4 HOH A 28 528 95 HOH TIP . 
J 4 HOH A 29 529 96 HOH TIP . 
J 4 HOH A 30 530 99 HOH TIP . 
J 4 HOH A 31 531 103 HOH TIP . 
J 4 HOH A 32 532 108 HOH TIP . 
J 4 HOH A 33 533 112 HOH TIP . 
J 4 HOH A 34 534 114 HOH TIP . 
J 4 HOH A 35 535 115 HOH TIP . 
J 4 HOH A 36 536 121 HOH TIP . 
J 4 HOH A 37 537 125 HOH TIP . 
J 4 HOH A 38 538 128 HOH TIP . 
J 4 HOH A 39 539 131 HOH TIP . 
J 4 HOH A 40 540 133 HOH TIP . 
J 4 HOH A 41 541 134 HOH TIP . 
J 4 HOH A 42 542 137 HOH TIP . 
J 4 HOH A 43 543 146 HOH TIP . 
J 4 HOH A 44 544 148 HOH TIP . 
J 4 HOH A 45 545 151 HOH TIP . 
J 4 HOH A 46 546 155 HOH TIP . 
J 4 HOH A 47 547 157 HOH TIP . 
J 4 HOH A 48 548 158 HOH TIP . 
J 4 HOH A 49 549 161 HOH TIP . 
J 4 HOH A 50 550 162 HOH TIP . 
J 4 HOH A 51 551 164 HOH TIP . 
J 4 HOH A 52 552 168 HOH TIP . 
J 4 HOH A 53 553 169 HOH TIP . 
J 4 HOH A 54 554 177 HOH TIP . 
J 4 HOH A 55 555 178 HOH TIP . 
J 4 HOH A 56 556 188 HOH TIP . 
J 4 HOH A 57 557 189 HOH TIP . 
J 4 HOH A 58 558 191 HOH TIP . 
K 4 HOH B 1 1501 1 HOH TIP . 
K 4 HOH B 2 1502 2 HOH TIP . 
K 4 HOH B 3 1503 4 HOH TIP . 
K 4 HOH B 4 1504 6 HOH TIP . 
K 4 HOH B 5 1505 9 HOH TIP . 
K 4 HOH B 6 1506 12 HOH TIP . 
K 4 HOH B 7 1507 13 HOH TIP . 
K 4 HOH B 8 1508 15 HOH TIP . 
K 4 HOH B 9 1509 20 HOH TIP . 
K 4 HOH B 10 1510 23 HOH TIP . 
K 4 HOH B 11 1511 24 HOH TIP . 
K 4 HOH B 12 1512 25 HOH TIP . 
K 4 HOH B 13 1513 27 HOH TIP . 
K 4 HOH B 14 1514 29 HOH TIP . 
K 4 HOH B 15 1515 30 HOH TIP . 
K 4 HOH B 16 1516 32 HOH TIP . 
K 4 HOH B 17 1517 33 HOH TIP . 
K 4 HOH B 18 1518 35 HOH TIP . 
K 4 HOH B 19 1519 36 HOH TIP . 
K 4 HOH B 20 1520 41 HOH TIP . 
K 4 HOH B 21 1521 49 HOH TIP . 
K 4 HOH B 22 1522 50 HOH TIP . 
K 4 HOH B 23 1523 55 HOH TIP . 
K 4 HOH B 24 1524 56 HOH TIP . 
K 4 HOH B 25 1525 58 HOH TIP . 
K 4 HOH B 26 1526 59 HOH TIP . 
K 4 HOH B 27 1527 63 HOH TIP . 
K 4 HOH B 28 1528 67 HOH TIP . 
K 4 HOH B 29 1529 78 HOH TIP . 
K 4 HOH B 30 1530 79 HOH TIP . 
K 4 HOH B 31 1531 80 HOH TIP . 
K 4 HOH B 32 1532 81 HOH TIP . 
K 4 HOH B 33 1533 83 HOH TIP . 
K 4 HOH B 34 1534 84 HOH TIP . 
K 4 HOH B 35 1535 85 HOH TIP . 
K 4 HOH B 36 1536 91 HOH TIP . 
K 4 HOH B 37 1537 97 HOH TIP . 
K 4 HOH B 38 1538 102 HOH TIP . 
K 4 HOH B 39 1539 104 HOH TIP . 
K 4 HOH B 40 1540 105 HOH TIP . 
K 4 HOH B 41 1541 106 HOH TIP . 
K 4 HOH B 42 1542 107 HOH TIP . 
K 4 HOH B 43 1543 111 HOH TIP . 
K 4 HOH B 44 1544 113 HOH TIP . 
K 4 HOH B 45 1545 116 HOH TIP . 
K 4 HOH B 46 1546 119 HOH TIP . 
K 4 HOH B 47 1547 123 HOH TIP . 
K 4 HOH B 48 1548 127 HOH TIP . 
K 4 HOH B 49 1549 132 HOH TIP . 
K 4 HOH B 50 1550 135 HOH TIP . 
K 4 HOH B 51 1551 138 HOH TIP . 
K 4 HOH B 52 1552 142 HOH TIP . 
K 4 HOH B 53 1553 143 HOH TIP . 
K 4 HOH B 54 1554 144 HOH TIP . 
K 4 HOH B 55 1555 145 HOH TIP . 
K 4 HOH B 56 1556 154 HOH TIP . 
K 4 HOH B 57 1557 163 HOH TIP . 
K 4 HOH B 58 1558 166 HOH TIP . 
K 4 HOH B 59 1559 167 HOH TIP . 
K 4 HOH B 60 1560 170 HOH TIP . 
K 4 HOH B 61 1561 172 HOH TIP . 
K 4 HOH B 62 1562 173 HOH TIP . 
K 4 HOH B 63 1563 175 HOH TIP . 
K 4 HOH B 64 1564 176 HOH TIP . 
K 4 HOH B 65 1565 182 HOH TIP . 
K 4 HOH B 66 1566 183 HOH TIP . 
K 4 HOH B 67 1567 184 HOH TIP . 
K 4 HOH B 68 1568 186 HOH TIP . 
K 4 HOH B 69 1569 187 HOH TIP . 
L 4 HOH C 1 2501 3 HOH TIP . 
L 4 HOH C 2 2502 7 HOH TIP . 
L 4 HOH C 3 2503 10 HOH TIP . 
L 4 HOH C 4 2504 11 HOH TIP . 
L 4 HOH C 5 2505 14 HOH TIP . 
L 4 HOH C 6 2506 16 HOH TIP . 
L 4 HOH C 7 2507 17 HOH TIP . 
L 4 HOH C 8 2508 18 HOH TIP . 
L 4 HOH C 9 2509 22 HOH TIP . 
L 4 HOH C 10 2510 26 HOH TIP . 
L 4 HOH C 11 2511 28 HOH TIP . 
L 4 HOH C 12 2512 34 HOH TIP . 
L 4 HOH C 13 2513 37 HOH TIP . 
L 4 HOH C 14 2514 38 HOH TIP . 
L 4 HOH C 15 2515 39 HOH TIP . 
L 4 HOH C 16 2516 45 HOH TIP . 
L 4 HOH C 17 2517 46 HOH TIP . 
L 4 HOH C 18 2518 48 HOH TIP . 
L 4 HOH C 19 2519 51 HOH TIP . 
L 4 HOH C 20 2520 52 HOH TIP . 
L 4 HOH C 21 2521 57 HOH TIP . 
L 4 HOH C 22 2522 64 HOH TIP . 
L 4 HOH C 23 2523 70 HOH TIP . 
L 4 HOH C 24 2524 71 HOH TIP . 
L 4 HOH C 25 2525 73 HOH TIP . 
L 4 HOH C 26 2526 74 HOH TIP . 
L 4 HOH C 27 2527 87 HOH TIP . 
L 4 HOH C 28 2528 88 HOH TIP . 
L 4 HOH C 29 2529 90 HOH TIP . 
L 4 HOH C 30 2530 92 HOH TIP . 
L 4 HOH C 31 2531 94 HOH TIP . 
L 4 HOH C 32 2532 98 HOH TIP . 
L 4 HOH C 33 2533 100 HOH TIP . 
L 4 HOH C 34 2534 101 HOH TIP . 
L 4 HOH C 35 2535 109 HOH TIP . 
L 4 HOH C 36 2536 110 HOH TIP . 
L 4 HOH C 37 2537 117 HOH TIP . 
L 4 HOH C 38 2538 118 HOH TIP . 
L 4 HOH C 39 2539 120 HOH TIP . 
L 4 HOH C 40 2540 122 HOH TIP . 
L 4 HOH C 41 2541 124 HOH TIP . 
L 4 HOH C 42 2542 126 HOH TIP . 
L 4 HOH C 43 2543 129 HOH TIP . 
L 4 HOH C 44 2544 130 HOH TIP . 
L 4 HOH C 45 2545 136 HOH TIP . 
L 4 HOH C 46 2546 139 HOH TIP . 
L 4 HOH C 47 2547 140 HOH TIP . 
L 4 HOH C 48 2548 141 HOH TIP . 
L 4 HOH C 49 2549 147 HOH TIP . 
L 4 HOH C 50 2550 149 HOH TIP . 
L 4 HOH C 51 2551 150 HOH TIP . 
L 4 HOH C 52 2552 152 HOH TIP . 
L 4 HOH C 53 2553 153 HOH TIP . 
L 4 HOH C 54 2554 156 HOH TIP . 
L 4 HOH C 55 2555 159 HOH TIP . 
L 4 HOH C 56 2556 160 HOH TIP . 
L 4 HOH C 57 2557 165 HOH TIP . 
L 4 HOH C 58 2558 171 HOH TIP . 
L 4 HOH C 59 2559 174 HOH TIP . 
L 4 HOH C 60 2560 179 HOH TIP . 
L 4 HOH C 61 2561 180 HOH TIP . 
L 4 HOH C 62 2562 181 HOH TIP . 
L 4 HOH C 63 2563 185 HOH TIP . 
L 4 HOH C 64 2564 190 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N9 GUN . . . E 3 44.769 28.109 -2.084 1 37.55 ? N9 GUN 400 A 1 
HETATM 2 C C8 GUN . . . E 3 44.995 26.851 -2.525 1 35.94 ? C8 GUN 400 A 1 
HETATM 3 N N7 GUN . . . E 3 44.578 25.897 -1.737 1 42.85 ? N7 GUN 400 A 1 
HETATM 4 C C5 GUN . . . E 3 44.032 26.606 -0.671 1 37.72 ? C5 GUN 400 A 1 
HETATM 5 C C6 GUN . . . E 3 43.398 26.145 0.541 1 31.29 ? C6 GUN 400 A 1 
HETATM 6 O O6 GUN . . . E 3 43.203 24.994 0.927 1 34.99 ? O6 GUN 400 A 1 
HETATM 7 N N1 GUN . . . E 3 42.99 27.229 1.341 1 36.8 ? N1 GUN 400 A 1 
HETATM 8 C C2 GUN . . . E 3 43.144 28.565 1.045 1 31.74 ? C2 GUN 400 A 1 
HETATM 9 N N2 GUN . . . E 3 42.689 29.47 1.922 1 36.34 ? N2 GUN 400 A 1 
HETATM 10 N N3 GUN . . . E 3 43.728 28.99 -0.074 1 26.35 ? N3 GUN 400 A 1 
HETATM 11 C C4 GUN . . . E 3 44.145 27.962 -0.892 1 38.58 ? C4 GUN 400 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           11 
#