data_1YQU # _model_server_result.job_id pVb97Y1S2q3jI63WsUKZrA _model_server_result.datetime_utc '2024-11-15 07:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 1YQU # _exptl.entry_id 1YQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.126 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YQU _cell.length_a 71.345 _cell.length_b 71.345 _cell.length_c 267.537 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 178.358 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C5 H5 N5 O' _chem_comp.formula_weight 151.126 _chem_comp.id GUN _chem_comp.mon_nstd_flag . _chem_comp.name GUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 GUN sing 129 n y N9 C4 GUN sing 130 n y N9 HN9 GUN sing 131 n n C8 N7 GUN doub 132 n y C8 H8 GUN sing 133 n n N7 C5 GUN sing 134 n y C5 C6 GUN sing 135 n n C5 C4 GUN doub 136 n y C6 O6 GUN doub 137 n n C6 N1 GUN sing 138 n n N1 C2 GUN sing 139 n n N1 HN1 GUN sing 140 n n C2 N2 GUN sing 141 n n C2 N3 GUN doub 142 n n N2 HN21 GUN sing 143 n n N2 HN22 GUN sing 144 n n N3 C4 GUN sing 145 n n # _atom_sites.entry_id 1YQU _atom_sites.fract_transf_matrix[1][1] 0.014016 _atom_sites.fract_transf_matrix[1][2] 0.008092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 500 500 PO4 IPS . E 3 GUN A 1 400 400 GUN GUN . F 2 PO4 B 1 501 500 PO4 IPS . G 3 GUN B 1 401 400 GUN GUN . H 2 PO4 C 1 502 500 PO4 IPS . I 3 GUN C 1 402 400 GUN GUN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 GUN . . . I 3 -6.751 58.01 112.838 1 86.53 ? N9 GUN 402 C 1 HETATM 2 C C8 GUN . . . I 3 -6.212 59.017 113.597 1 86.35 ? C8 GUN 402 C 1 HETATM 3 N N7 GUN . . . I 3 -6.912 59.309 114.678 1 86.21 ? N7 GUN 402 C 1 HETATM 4 C C5 GUN . . . I 3 -8.013 58.448 114.668 1 85.47 ? C5 GUN 402 C 1 HETATM 5 C C6 GUN . . . I 3 -9.147 58.309 115.63 1 85.51 ? C6 GUN 402 C 1 HETATM 6 O O6 GUN . . . I 3 -9.409 58.962 116.733 1 84.83 ? O6 GUN 402 C 1 HETATM 7 N N1 GUN . . . I 3 -10.04 57.278 115.188 1 85.07 ? N1 GUN 402 C 1 HETATM 8 C C2 GUN . . . I 3 -9.881 56.484 114.007 1 84.92 ? C2 GUN 402 C 1 HETATM 9 N N2 GUN . . . I 3 -10.815 55.549 113.735 1 85.66 ? N2 GUN 402 C 1 HETATM 10 N N3 GUN . . . I 3 -8.82 56.636 113.14 1 85.1 ? N3 GUN 402 C 1 HETATM 11 C C4 GUN . . . I 3 -7.931 57.626 113.53 1 85.4 ? C4 GUN 402 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #