data_1YQX # _model_server_result.job_id T9rFNqrYW7KVePs0CBDfSg _model_server_result.datetime_utc '2025-03-06 01:03:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2000}' # _entry.id 1YQX # _exptl.entry_id 1YQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YQX _cell.length_a 76.362 _cell.length_b 138.165 _cell.length_c 67.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 54 A CYS 50 1_555 C ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A NE2 HIS 76 A HIS 72 1_555 C ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A SG CYS 107 A CYS 103 1_555 D ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 A SG CYS 110 A CYS 106 1_555 D ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc5 A SG CYS 113 A CYS 109 1_555 D ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 A SG CYS 121 A CYS 117 1_555 D ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc7 A SG CYS 170 A CYS 166 1_555 C ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 C ZN ZN . A ZN 1000 1_555 I O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc9 B SG CYS 54 B CYS 50 1_555 G ZN ZN . B ZN 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc10 B NE2 HIS 76 B HIS 72 1_555 G ZN ZN . B ZN 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc11 B SG CYS 107 B CYS 103 1_555 F ZN ZN . B ZN 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc12 B SG CYS 110 B CYS 106 1_555 F ZN ZN . B ZN 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc13 B SG CYS 113 B CYS 109 1_555 F ZN ZN . B ZN 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc14 B SG CYS 121 B CYS 117 1_555 F ZN ZN . B ZN 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc15 B SG CYS 170 B CYS 166 1_555 G ZN ZN . B ZN 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc16 G ZN ZN . B ZN 4000 1_555 J O HOH . B HOH 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YQX _atom_sites.fract_transf_matrix[1][1] 0.013096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1000 1000 ZN ZN . D 2 ZN A 1 2000 2000 ZN ZN . E 3 NAP A 1 500 500 NAP NAP . F 2 ZN B 1 3000 3000 ZN ZN . G 2 ZN B 1 4000 4000 ZN ZN . H 3 NAP B 1 600 600 NAP NAP . I 4 HOH A 1 2001 2 HOH TIP . I 4 HOH A 2 2002 9 HOH TIP . I 4 HOH A 3 2003 13 HOH TIP . I 4 HOH A 4 2004 15 HOH TIP . I 4 HOH A 5 2005 16 HOH TIP . I 4 HOH A 6 2006 18 HOH TIP . I 4 HOH A 7 2007 21 HOH TIP . I 4 HOH A 8 2008 22 HOH TIP . I 4 HOH A 9 2009 23 HOH TIP . I 4 HOH A 10 2010 26 HOH TIP . I 4 HOH A 11 2011 27 HOH TIP . I 4 HOH A 12 2012 29 HOH TIP . I 4 HOH A 13 2013 31 HOH TIP . I 4 HOH A 14 2014 35 HOH TIP . I 4 HOH A 15 2015 36 HOH TIP . I 4 HOH A 16 2016 37 HOH TIP . I 4 HOH A 17 2017 40 HOH TIP . I 4 HOH A 18 2018 41 HOH TIP . I 4 HOH A 19 2019 43 HOH TIP . J 4 HOH B 1 4001 3 HOH TIP . J 4 HOH B 2 4002 5 HOH TIP . J 4 HOH B 3 4003 6 HOH TIP . J 4 HOH B 4 4004 7 HOH TIP . J 4 HOH B 5 4005 8 HOH TIP . J 4 HOH B 6 4006 10 HOH TIP . J 4 HOH B 7 4007 11 HOH TIP . J 4 HOH B 8 4008 12 HOH TIP . J 4 HOH B 9 4009 14 HOH TIP . J 4 HOH B 10 4010 17 HOH TIP . J 4 HOH B 11 4011 19 HOH TIP . J 4 HOH B 12 4012 20 HOH TIP . J 4 HOH B 13 4013 24 HOH TIP . J 4 HOH B 14 4014 28 HOH TIP . J 4 HOH B 15 4015 30 HOH TIP . J 4 HOH B 16 4016 32 HOH TIP . J 4 HOH B 17 4017 33 HOH TIP . J 4 HOH B 18 4018 34 HOH TIP . J 4 HOH B 19 4019 38 HOH TIP . J 4 HOH B 20 4020 39 HOH TIP . J 4 HOH B 21 4021 42 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 65.816 _atom_site.Cartn_y 108.933 _atom_site.Cartn_z 36.107 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2000 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #