data_1YRS # _model_server_result.job_id 99PqA7_pCslk-eHFjrPk9g _model_server_result.datetime_utc '2024-10-13 13:11:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yrs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 1YRS # _exptl.entry_id 1YRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YRS _cell.length_a 69.3 _cell.length_b 79.8 _cell.length_c 159.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 112 A THR 112 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 D O1B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc3 D O3B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 C MG MG . A MG 603 1_555 I O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 C MG MG . A MG 603 1_555 I O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc6 B OG1 THR 112 B THR 112 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 G O3B ADP . B ADP 600 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc8 F MG MG . B MG 602 1_555 J O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YRS _atom_sites.fract_transf_matrix[1][1] 0.01443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 603 603 MG MG . D 3 ADP A 1 601 601 ADP ADP . E 4 L47 A 1 604 2 L47 L47 . F 2 MG B 1 602 602 MG MG . G 3 ADP B 1 600 600 ADP ADP . H 4 L47 B 1 603 1 L47 L47 . I 5 HOH A 1 605 1 HOH HOH . I 5 HOH A 2 606 3 HOH HOH . I 5 HOH A 3 607 4 HOH HOH . I 5 HOH A 4 608 5 HOH HOH . I 5 HOH A 5 609 7 HOH HOH . I 5 HOH A 6 610 10 HOH HOH . I 5 HOH A 7 611 12 HOH HOH . I 5 HOH A 8 612 13 HOH HOH . I 5 HOH A 9 613 21 HOH HOH . I 5 HOH A 10 614 22 HOH HOH . I 5 HOH A 11 615 23 HOH HOH . I 5 HOH A 12 616 24 HOH HOH . I 5 HOH A 13 617 25 HOH HOH . I 5 HOH A 14 618 26 HOH HOH . I 5 HOH A 15 619 27 HOH HOH . I 5 HOH A 16 620 28 HOH HOH . I 5 HOH A 17 621 29 HOH HOH . I 5 HOH A 18 622 30 HOH HOH . I 5 HOH A 19 623 32 HOH HOH . I 5 HOH A 20 624 33 HOH HOH . I 5 HOH A 21 625 34 HOH HOH . I 5 HOH A 22 626 38 HOH HOH . I 5 HOH A 23 627 39 HOH HOH . I 5 HOH A 24 628 41 HOH HOH . I 5 HOH A 25 629 42 HOH HOH . I 5 HOH A 26 630 45 HOH HOH . I 5 HOH A 27 631 49 HOH HOH . I 5 HOH A 28 632 50 HOH HOH . I 5 HOH A 29 633 52 HOH HOH . I 5 HOH A 30 634 53 HOH HOH . I 5 HOH A 31 635 54 HOH HOH . I 5 HOH A 32 636 57 HOH HOH . I 5 HOH A 33 637 58 HOH HOH . I 5 HOH A 34 638 59 HOH HOH . I 5 HOH A 35 639 60 HOH HOH . I 5 HOH A 36 640 65 HOH HOH . I 5 HOH A 37 641 66 HOH HOH . I 5 HOH A 38 642 67 HOH HOH . I 5 HOH A 39 643 70 HOH HOH . I 5 HOH A 40 644 71 HOH HOH . I 5 HOH A 41 645 75 HOH HOH . I 5 HOH A 42 646 76 HOH HOH . I 5 HOH A 43 647 77 HOH HOH . I 5 HOH A 44 648 79 HOH HOH . I 5 HOH A 45 649 83 HOH HOH . I 5 HOH A 46 650 84 HOH HOH . I 5 HOH A 47 651 88 HOH HOH . I 5 HOH A 48 652 89 HOH HOH . I 5 HOH A 49 653 90 HOH HOH . I 5 HOH A 50 654 91 HOH HOH . I 5 HOH A 51 655 92 HOH HOH . I 5 HOH A 52 656 93 HOH HOH . I 5 HOH A 53 657 95 HOH HOH . I 5 HOH A 54 658 99 HOH HOH . I 5 HOH A 55 659 100 HOH HOH . I 5 HOH A 56 660 101 HOH HOH . I 5 HOH A 57 661 102 HOH HOH . I 5 HOH A 58 662 105 HOH HOH . I 5 HOH A 59 663 107 HOH HOH . I 5 HOH A 60 664 108 HOH HOH . I 5 HOH A 61 665 109 HOH HOH . I 5 HOH A 62 666 110 HOH HOH . I 5 HOH A 63 667 111 HOH HOH . I 5 HOH A 64 668 113 HOH HOH . I 5 HOH A 65 669 114 HOH HOH . I 5 HOH A 66 670 120 HOH HOH . I 5 HOH A 67 671 122 HOH HOH . I 5 HOH A 68 672 123 HOH HOH . I 5 HOH A 69 673 125 HOH HOH . I 5 HOH A 70 674 126 HOH HOH . I 5 HOH A 71 675 127 HOH HOH . I 5 HOH A 72 676 130 HOH HOH . I 5 HOH A 73 677 131 HOH HOH . I 5 HOH A 74 678 132 HOH HOH . I 5 HOH A 75 679 133 HOH HOH . I 5 HOH A 76 680 134 HOH HOH . I 5 HOH A 77 681 136 HOH HOH . I 5 HOH A 78 682 137 HOH HOH . I 5 HOH A 79 683 139 HOH HOH . I 5 HOH A 80 684 142 HOH HOH . I 5 HOH A 81 685 143 HOH HOH . I 5 HOH A 82 686 144 HOH HOH . I 5 HOH A 83 687 145 HOH HOH . I 5 HOH A 84 688 147 HOH HOH . I 5 HOH A 85 689 150 HOH HOH . I 5 HOH A 86 690 151 HOH HOH . I 5 HOH A 87 691 152 HOH HOH . I 5 HOH A 88 692 153 HOH HOH . I 5 HOH A 89 693 154 HOH HOH . I 5 HOH A 90 694 155 HOH HOH . I 5 HOH A 91 695 156 HOH HOH . I 5 HOH A 92 696 159 HOH HOH . I 5 HOH A 93 697 160 HOH HOH . I 5 HOH A 94 698 161 HOH HOH . I 5 HOH A 95 699 162 HOH HOH . I 5 HOH A 96 700 165 HOH HOH . I 5 HOH A 97 701 166 HOH HOH . J 5 HOH B 1 604 2 HOH HOH . J 5 HOH B 2 605 6 HOH HOH . J 5 HOH B 3 606 8 HOH HOH . J 5 HOH B 4 607 9 HOH HOH . J 5 HOH B 5 608 11 HOH HOH . J 5 HOH B 6 609 14 HOH HOH . J 5 HOH B 7 610 15 HOH HOH . J 5 HOH B 8 611 16 HOH HOH . J 5 HOH B 9 612 17 HOH HOH . J 5 HOH B 10 613 18 HOH HOH . J 5 HOH B 11 614 19 HOH HOH . J 5 HOH B 12 615 20 HOH HOH . J 5 HOH B 13 616 31 HOH HOH . J 5 HOH B 14 617 35 HOH HOH . J 5 HOH B 15 618 36 HOH HOH . J 5 HOH B 16 619 37 HOH HOH . J 5 HOH B 17 620 40 HOH HOH . J 5 HOH B 18 621 43 HOH HOH . J 5 HOH B 19 622 44 HOH HOH . J 5 HOH B 20 623 46 HOH HOH . J 5 HOH B 21 624 47 HOH HOH . J 5 HOH B 22 625 48 HOH HOH . J 5 HOH B 23 626 51 HOH HOH . J 5 HOH B 24 627 55 HOH HOH . J 5 HOH B 25 628 56 HOH HOH . J 5 HOH B 26 629 61 HOH HOH . J 5 HOH B 27 630 62 HOH HOH . J 5 HOH B 28 631 63 HOH HOH . J 5 HOH B 29 632 64 HOH HOH . J 5 HOH B 30 633 68 HOH HOH . J 5 HOH B 31 634 69 HOH HOH . J 5 HOH B 32 635 72 HOH HOH . J 5 HOH B 33 636 73 HOH HOH . J 5 HOH B 34 637 74 HOH HOH . J 5 HOH B 35 638 78 HOH HOH . J 5 HOH B 36 639 80 HOH HOH . J 5 HOH B 37 640 81 HOH HOH . J 5 HOH B 38 641 82 HOH HOH . J 5 HOH B 39 642 85 HOH HOH . J 5 HOH B 40 643 86 HOH HOH . J 5 HOH B 41 644 87 HOH HOH . J 5 HOH B 42 645 94 HOH HOH . J 5 HOH B 43 646 96 HOH HOH . J 5 HOH B 44 647 97 HOH HOH . J 5 HOH B 45 648 98 HOH HOH . J 5 HOH B 46 649 103 HOH HOH . J 5 HOH B 47 650 104 HOH HOH . J 5 HOH B 48 651 106 HOH HOH . J 5 HOH B 49 652 112 HOH HOH . J 5 HOH B 50 653 115 HOH HOH . J 5 HOH B 51 654 116 HOH HOH . J 5 HOH B 52 655 117 HOH HOH . J 5 HOH B 53 656 118 HOH HOH . J 5 HOH B 54 657 119 HOH HOH . J 5 HOH B 55 658 121 HOH HOH . J 5 HOH B 56 659 124 HOH HOH . J 5 HOH B 57 660 128 HOH HOH . J 5 HOH B 58 661 129 HOH HOH . J 5 HOH B 59 662 135 HOH HOH . J 5 HOH B 60 663 138 HOH HOH . J 5 HOH B 61 664 140 HOH HOH . J 5 HOH B 62 665 141 HOH HOH . J 5 HOH B 63 666 146 HOH HOH . J 5 HOH B 64 667 148 HOH HOH . J 5 HOH B 65 668 149 HOH HOH . J 5 HOH B 66 669 157 HOH HOH . J 5 HOH B 67 670 158 HOH HOH . J 5 HOH B 68 671 163 HOH HOH . J 5 HOH B 69 672 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.002 _atom_site.Cartn_y 10.538 _atom_site.Cartn_z 60.374 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #