data_1YRT # _model_server_result.job_id OX_dgoWBrmX093a3mtOt4g _model_server_result.datetime_utc '2024-10-11 08:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yrt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 1YRT # _exptl.entry_id 1YRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YRT _cell.length_a 79.362 _cell.length_b 79.362 _cell.length_c 139.211 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 19 B ASP 93 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 B OD1 ASP 21 B ASP 95 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 B OD1 ASN 23 B ASN 97 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc4 B O TYR 25 B TYR 99 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 B OE1 GLU 30 B GLU 104 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 B OE2 GLU 30 B GLU 104 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc7 B OD2 ASP 55 B ASP 129 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc8 B OD1 ASP 57 B ASP 131 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 B OD1 ASP 59 B ASP 133 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 B O GLN 61 B GLN 135 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 B OE1 GLU 66 B GLU 140 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc12 B OE2 GLU 66 B GLU 140 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc13 C CA CA . B CA 800 1_555 F O HOH . B HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YRT _atom_sites.fract_transf_matrix[1][1] 0.0126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 800 800 CA CA2 . D 3 CA B 1 801 801 CA CA2 . E 4 HOH A 1 365 1 HOH TIP . E 4 HOH A 2 366 2 HOH TIP . E 4 HOH A 3 367 3 HOH TIP . E 4 HOH A 4 368 4 HOH TIP . E 4 HOH A 5 369 5 HOH TIP . E 4 HOH A 6 370 6 HOH TIP . E 4 HOH A 7 371 7 HOH TIP . E 4 HOH A 8 372 8 HOH TIP . E 4 HOH A 9 373 11 HOH TIP . E 4 HOH A 10 374 13 HOH TIP . E 4 HOH A 11 375 14 HOH TIP . E 4 HOH A 12 376 15 HOH TIP . E 4 HOH A 13 377 16 HOH TIP . E 4 HOH A 14 378 17 HOH TIP . E 4 HOH A 15 379 18 HOH TIP . E 4 HOH A 16 380 19 HOH TIP . E 4 HOH A 17 381 20 HOH TIP . E 4 HOH A 18 382 21 HOH TIP . E 4 HOH A 19 383 22 HOH TIP . E 4 HOH A 20 384 23 HOH TIP . E 4 HOH A 21 385 24 HOH TIP . E 4 HOH A 22 386 25 HOH TIP . E 4 HOH A 23 387 26 HOH TIP . E 4 HOH A 24 388 27 HOH TIP . E 4 HOH A 25 389 28 HOH TIP . E 4 HOH A 26 390 29 HOH TIP . E 4 HOH A 27 391 30 HOH TIP . E 4 HOH A 28 392 32 HOH TIP . E 4 HOH A 29 393 33 HOH TIP . E 4 HOH A 30 394 34 HOH TIP . E 4 HOH A 31 395 35 HOH TIP . E 4 HOH A 32 396 36 HOH TIP . E 4 HOH A 33 397 37 HOH TIP . E 4 HOH A 34 398 38 HOH TIP . E 4 HOH A 35 399 39 HOH TIP . E 4 HOH A 36 400 40 HOH TIP . E 4 HOH A 37 401 42 HOH TIP . E 4 HOH A 38 402 43 HOH TIP . E 4 HOH A 39 403 44 HOH TIP . E 4 HOH A 40 404 45 HOH TIP . E 4 HOH A 41 405 46 HOH TIP . E 4 HOH A 42 406 47 HOH TIP . E 4 HOH A 43 407 48 HOH TIP . E 4 HOH A 44 408 49 HOH TIP . E 4 HOH A 45 409 50 HOH TIP . E 4 HOH A 46 410 51 HOH TIP . E 4 HOH A 47 411 52 HOH TIP . E 4 HOH A 48 412 55 HOH TIP . E 4 HOH A 49 413 57 HOH TIP . E 4 HOH A 50 414 58 HOH TIP . E 4 HOH A 51 415 59 HOH TIP . E 4 HOH A 52 416 60 HOH TIP . E 4 HOH A 53 417 62 HOH TIP . E 4 HOH A 54 418 63 HOH TIP . E 4 HOH A 55 419 64 HOH TIP . E 4 HOH A 56 420 65 HOH TIP . E 4 HOH A 57 421 66 HOH TIP . E 4 HOH A 58 422 67 HOH TIP . E 4 HOH A 59 423 68 HOH TIP . E 4 HOH A 60 424 69 HOH TIP . E 4 HOH A 61 425 70 HOH TIP . E 4 HOH A 62 426 71 HOH TIP . E 4 HOH A 63 427 72 HOH TIP . E 4 HOH A 64 428 74 HOH TIP . E 4 HOH A 65 429 75 HOH TIP . E 4 HOH A 66 430 76 HOH TIP . E 4 HOH A 67 431 77 HOH TIP . E 4 HOH A 68 432 78 HOH TIP . E 4 HOH A 69 433 79 HOH TIP . E 4 HOH A 70 434 83 HOH TIP . E 4 HOH A 71 435 85 HOH TIP . E 4 HOH A 72 436 86 HOH TIP . E 4 HOH A 73 437 87 HOH TIP . E 4 HOH A 74 438 88 HOH TIP . E 4 HOH A 75 439 89 HOH TIP . E 4 HOH A 76 440 90 HOH TIP . E 4 HOH A 77 441 91 HOH TIP . E 4 HOH A 78 442 92 HOH TIP . E 4 HOH A 79 443 93 HOH TIP . E 4 HOH A 80 444 94 HOH TIP . E 4 HOH A 81 445 95 HOH TIP . E 4 HOH A 82 446 98 HOH TIP . E 4 HOH A 83 447 99 HOH TIP . E 4 HOH A 84 448 100 HOH TIP . E 4 HOH A 85 449 101 HOH TIP . E 4 HOH A 86 450 102 HOH TIP . E 4 HOH A 87 451 103 HOH TIP . E 4 HOH A 88 452 104 HOH TIP . E 4 HOH A 89 453 105 HOH TIP . E 4 HOH A 90 454 106 HOH TIP . E 4 HOH A 91 455 107 HOH TIP . E 4 HOH A 92 456 108 HOH TIP . E 4 HOH A 93 457 109 HOH TIP . E 4 HOH A 94 458 110 HOH TIP . E 4 HOH A 95 459 112 HOH TIP . E 4 HOH A 96 460 113 HOH TIP . E 4 HOH A 97 461 114 HOH TIP . E 4 HOH A 98 462 115 HOH TIP . E 4 HOH A 99 463 116 HOH TIP . E 4 HOH A 100 464 117 HOH TIP . E 4 HOH A 101 465 118 HOH TIP . E 4 HOH A 102 466 119 HOH TIP . E 4 HOH A 103 467 120 HOH TIP . E 4 HOH A 104 468 122 HOH TIP . E 4 HOH A 105 469 123 HOH TIP . E 4 HOH A 106 470 126 HOH TIP . E 4 HOH A 107 471 127 HOH TIP . E 4 HOH A 108 472 128 HOH TIP . E 4 HOH A 109 473 129 HOH TIP . E 4 HOH A 110 474 130 HOH TIP . E 4 HOH A 111 475 131 HOH TIP . E 4 HOH A 112 476 132 HOH TIP . E 4 HOH A 113 477 133 HOH TIP . E 4 HOH A 114 478 134 HOH TIP . E 4 HOH A 115 479 136 HOH TIP . E 4 HOH A 116 480 137 HOH TIP . E 4 HOH A 117 481 139 HOH TIP . E 4 HOH A 118 482 140 HOH TIP . E 4 HOH A 119 483 141 HOH TIP . E 4 HOH A 120 484 142 HOH TIP . E 4 HOH A 121 485 144 HOH TIP . E 4 HOH A 122 486 145 HOH TIP . E 4 HOH A 123 487 146 HOH TIP . E 4 HOH A 124 488 147 HOH TIP . E 4 HOH A 125 489 148 HOH TIP . E 4 HOH A 126 490 149 HOH TIP . E 4 HOH A 127 491 151 HOH TIP . E 4 HOH A 128 492 152 HOH TIP . E 4 HOH A 129 493 153 HOH TIP . E 4 HOH A 130 494 154 HOH TIP . E 4 HOH A 131 495 155 HOH TIP . E 4 HOH A 132 496 157 HOH TIP . E 4 HOH A 133 497 158 HOH TIP . F 4 HOH B 1 802 9 HOH TIP . F 4 HOH B 2 803 10 HOH TIP . F 4 HOH B 3 804 12 HOH TIP . F 4 HOH B 4 805 31 HOH TIP . F 4 HOH B 5 806 41 HOH TIP . F 4 HOH B 6 807 53 HOH TIP . F 4 HOH B 7 808 54 HOH TIP . F 4 HOH B 8 809 56 HOH TIP . F 4 HOH B 9 810 61 HOH TIP . F 4 HOH B 10 811 73 HOH TIP . F 4 HOH B 11 812 80 HOH TIP . F 4 HOH B 12 813 81 HOH TIP . F 4 HOH B 13 814 82 HOH TIP . F 4 HOH B 14 815 84 HOH TIP . F 4 HOH B 15 816 96 HOH TIP . F 4 HOH B 16 817 97 HOH TIP . F 4 HOH B 17 818 111 HOH TIP . F 4 HOH B 18 819 121 HOH TIP . F 4 HOH B 19 820 124 HOH TIP . F 4 HOH B 20 821 125 HOH TIP . F 4 HOH B 21 822 135 HOH TIP . F 4 HOH B 22 823 138 HOH TIP . F 4 HOH B 23 824 143 HOH TIP . F 4 HOH B 24 825 150 HOH TIP . F 4 HOH B 25 826 156 HOH TIP . F 4 HOH B 26 827 159 HOH TIP . F 4 HOH B 27 828 160 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 18.867 _atom_site.Cartn_y 17.632 _atom_site.Cartn_z 57.867 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 801 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #