data_1YRU
#
_model_server_result.job_id            Vc2_v1iMHYo2ztnqaHv1qg 
_model_server_result.datetime_utc      '2024-11-22 13:08:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yru 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    1YRU 
#
_exptl.entry_id    1YRU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YRU 
_cell.length_a            79.441 
_cell.length_b            79.441 
_cell.length_c            139.181 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YRU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O HOH . B HOH 42 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc2 B OD2 ASP 19 B ASP 93 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc3 B OD1 ASP 21 B ASP 95 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc4 B ND2 ASN 23 B ASN 97 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.335 ? 
metalc ? metalc5 B OD1 ASN 23 B ASN 97 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc6 B O TYR 25 B TYR 99 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc7 B OE1 GLU 30 B GLU 104 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc8 B OE2 GLU 30 B GLU 104 1_555 D CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc9 B OD2 ASP 55 B ASP 129 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc10 B OD1 ASP 57 B ASP 131 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc11 B OD1 ASP 59 B ASP 133 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc12 B O GLN 61 B GLN 135 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc13 B OE1 GLU 66 B GLU 140 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc14 B OE2 GLU 66 B GLU 140 1_555 C CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YRU 
_atom_sites.fract_transf_matrix[1][1]    0.012588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA B 1 800 800 CA CA2 . 
D 3 CA B 1 801 801 CA CA2 . 
E 4 HOH A 1 365 1 HOH TIP . 
E 4 HOH A 2 366 2 HOH TIP . 
E 4 HOH A 3 367 3 HOH TIP . 
E 4 HOH A 4 368 4 HOH TIP . 
E 4 HOH A 5 369 5 HOH TIP . 
E 4 HOH A 6 370 6 HOH TIP . 
E 4 HOH A 7 371 7 HOH TIP . 
E 4 HOH A 8 372 8 HOH TIP . 
E 4 HOH A 9 373 9 HOH TIP . 
E 4 HOH A 10 374 11 HOH TIP . 
E 4 HOH A 11 375 12 HOH TIP . 
E 4 HOH A 12 376 14 HOH TIP . 
E 4 HOH A 13 377 15 HOH TIP . 
E 4 HOH A 14 378 17 HOH TIP . 
E 4 HOH A 15 379 19 HOH TIP . 
E 4 HOH A 16 380 20 HOH TIP . 
E 4 HOH A 17 381 21 HOH TIP . 
E 4 HOH A 18 382 22 HOH TIP . 
E 4 HOH A 19 383 23 HOH TIP . 
E 4 HOH A 20 384 24 HOH TIP . 
E 4 HOH A 21 385 26 HOH TIP . 
E 4 HOH A 22 386 29 HOH TIP . 
E 4 HOH A 23 387 30 HOH TIP . 
E 4 HOH A 24 388 31 HOH TIP . 
E 4 HOH A 25 389 32 HOH TIP . 
E 4 HOH A 26 390 34 HOH TIP . 
E 4 HOH A 27 391 35 HOH TIP . 
E 4 HOH A 28 392 36 HOH TIP . 
E 4 HOH A 29 393 37 HOH TIP . 
E 4 HOH A 30 394 39 HOH TIP . 
E 4 HOH A 31 395 40 HOH TIP . 
E 4 HOH A 32 396 41 HOH TIP . 
E 4 HOH A 33 397 43 HOH TIP . 
E 4 HOH A 34 398 44 HOH TIP . 
E 4 HOH A 35 399 45 HOH TIP . 
E 4 HOH A 36 400 46 HOH TIP . 
E 4 HOH A 37 401 48 HOH TIP . 
E 4 HOH A 38 402 49 HOH TIP . 
E 4 HOH A 39 403 50 HOH TIP . 
E 4 HOH A 40 404 51 HOH TIP . 
E 4 HOH A 41 405 53 HOH TIP . 
E 4 HOH A 42 406 54 HOH TIP . 
E 4 HOH A 43 407 55 HOH TIP . 
E 4 HOH A 44 408 56 HOH TIP . 
E 4 HOH A 45 409 58 HOH TIP . 
E 4 HOH A 46 410 60 HOH TIP . 
E 4 HOH A 47 411 61 HOH TIP . 
E 4 HOH A 48 412 62 HOH TIP . 
E 4 HOH A 49 413 63 HOH TIP . 
E 4 HOH A 50 414 64 HOH TIP . 
E 4 HOH A 51 415 65 HOH TIP . 
E 4 HOH A 52 416 66 HOH TIP . 
E 4 HOH A 53 417 67 HOH TIP . 
E 4 HOH A 54 418 69 HOH TIP . 
E 4 HOH A 55 419 70 HOH TIP . 
E 4 HOH A 56 420 71 HOH TIP . 
F 4 HOH B 1 10 10 HOH TIP . 
F 4 HOH B 2 16 16 HOH TIP . 
F 4 HOH B 3 18 18 HOH TIP . 
F 4 HOH B 4 25 25 HOH TIP . 
F 4 HOH B 5 27 27 HOH TIP . 
F 4 HOH B 6 28 28 HOH TIP . 
F 4 HOH B 7 33 33 HOH TIP . 
F 4 HOH B 8 38 38 HOH TIP . 
F 4 HOH B 9 42 42 HOH TIP . 
F 4 HOH B 10 47 47 HOH TIP . 
F 4 HOH B 11 52 52 HOH TIP . 
F 4 HOH B 12 57 57 HOH TIP . 
F 4 HOH B 13 59 59 HOH TIP . 
F 4 HOH B 14 68 68 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               19.038 
_atom_site.Cartn_y               17.665 
_atom_site.Cartn_z               57.89 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           801 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#