data_1YRX
#
_model_server_result.job_id            OPYBegktw2vZGpskDsQUQw 
_model_server_result.datetime_utc      '2025-04-04 11:57:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yrx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    1YRX 
#
_exptl.entry_id    1YRX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              271.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-DODECYL-N,N-DIMETHYLGLYCINATE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YRX 
_cell.length_a            98.671 
_cell.length_b            98.671 
_cell.length_c            127.453 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PQS hexameric 6 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,M,N 1 1 
C,I,J,K,L,O 2 1,2 
C,I,J,K,L,O 3 3,4 
A,B,D,E,F,G,H,M,N 3 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 4 1,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 63.7265 
3 'crystal symmetry operation' 2_554 -x,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 0 0 -63.7265 
4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -63.7265 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C16 H33 N O2' 
_chem_comp.formula_weight    271.439 
_chem_comp.id                D9G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-DODECYL-N,N-DIMETHYLGLYCINATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CAD D9G sing 83 n n 
CAC HAC1 D9G sing 84 n n 
CAC HAC2 D9G sing 85 n n 
CAC HAC3 D9G sing 86 n n 
CAD CAE D9G sing 87 n n 
CAD HAD1 D9G sing 88 n n 
CAD HAD2 D9G sing 89 n n 
CAE CAF D9G sing 90 n n 
CAE HAE1 D9G sing 91 n n 
CAE HAE2 D9G sing 92 n n 
CAF CAG D9G sing 93 n n 
CAF HAF1 D9G sing 94 n n 
CAF HAF2 D9G sing 95 n n 
CAG CAH D9G sing 96 n n 
CAG HAG1 D9G sing 97 n n 
CAG HAG2 D9G sing 98 n n 
CAH CAI D9G sing 99 n n 
CAH HAH1 D9G sing 100 n n 
CAH HAH2 D9G sing 101 n n 
CAI CAJ D9G sing 102 n n 
CAI HAI1 D9G sing 103 n n 
CAI HAI2 D9G sing 104 n n 
CAJ CAK D9G sing 105 n n 
CAJ HAJ1 D9G sing 106 n n 
CAJ HAJ2 D9G sing 107 n n 
CAK CAL D9G sing 108 n n 
CAK HAK1 D9G sing 109 n n 
CAK HAK2 D9G sing 110 n n 
CAL CAM D9G sing 111 n n 
CAL HAL1 D9G sing 112 n n 
CAL HAL2 D9G sing 113 n n 
CAM CAN D9G sing 114 n n 
CAM HAM1 D9G sing 115 n n 
CAM HAM2 D9G sing 116 n n 
CAN NAO D9G sing 117 n n 
CAN HAN1 D9G sing 118 n n 
CAN HAN2 D9G sing 119 n n 
NAO CAS D9G sing 120 n n 
NAO CAA D9G sing 121 n n 
NAO CAP D9G sing 122 n n 
CAS HAS1 D9G sing 123 n n 
CAS HAS2 D9G sing 124 n n 
CAS HAS3 D9G sing 125 n n 
CAA HAA1 D9G sing 126 n n 
CAA HAA2 D9G sing 127 n n 
CAA HAA3 D9G sing 128 n n 
CAP CAQ D9G sing 129 n n 
CAP HAP1 D9G sing 130 n n 
CAP HAP2 D9G sing 131 n n 
CAQ OAB D9G sing 132 n n 
CAQ OAR D9G doub 133 n n 
#
_atom_sites.entry_id                     1YRX 
_atom_sites.fract_transf_matrix[1][1]    0.010135 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FMN A 1 201 201 FMN FMN . 
E 3 D9G A 1 302 302 D9G DMG . 
F 3 D9G A 1 303 303 D9G DMG . 
G 3 D9G A 1 306 306 D9G DMG . 
H 2 FMN B 1 202 201 FMN FMN . 
I 2 FMN C 1 203 201 FMN FMN . 
J 3 D9G C 1 301 301 D9G DMG . 
K 3 D9G C 1 304 304 D9G DMG . 
L 3 D9G C 1 305 305 D9G DMG . 
M 4 HOH A 1 307 1 HOH HOH . 
M 4 HOH A 2 308 3 HOH HOH . 
M 4 HOH A 3 309 4 HOH HOH . 
M 4 HOH A 4 310 6 HOH HOH . 
M 4 HOH A 5 311 7 HOH HOH . 
M 4 HOH A 6 312 8 HOH HOH . 
M 4 HOH A 7 313 9 HOH HOH . 
M 4 HOH A 8 314 10 HOH HOH . 
M 4 HOH A 9 315 11 HOH HOH . 
M 4 HOH A 10 316 12 HOH HOH . 
M 4 HOH A 11 317 14 HOH HOH . 
M 4 HOH A 12 318 18 HOH HOH . 
M 4 HOH A 13 319 20 HOH HOH . 
M 4 HOH A 14 320 30 HOH HOH . 
M 4 HOH A 15 321 31 HOH HOH . 
M 4 HOH A 16 322 33 HOH HOH . 
M 4 HOH A 17 323 35 HOH HOH . 
M 4 HOH A 18 324 36 HOH HOH . 
M 4 HOH A 19 325 37 HOH HOH . 
M 4 HOH A 20 326 38 HOH HOH . 
M 4 HOH A 21 327 45 HOH HOH . 
M 4 HOH A 22 328 47 HOH HOH . 
M 4 HOH A 23 329 48 HOH HOH . 
M 4 HOH A 24 330 49 HOH HOH . 
M 4 HOH A 25 331 51 HOH HOH . 
M 4 HOH A 26 332 53 HOH HOH . 
M 4 HOH A 27 333 54 HOH HOH . 
M 4 HOH A 28 334 55 HOH HOH . 
M 4 HOH A 29 335 57 HOH HOH . 
M 4 HOH A 30 336 59 HOH HOH . 
M 4 HOH A 31 337 62 HOH HOH . 
M 4 HOH A 32 338 68 HOH HOH . 
M 4 HOH A 33 339 69 HOH HOH . 
M 4 HOH A 34 340 71 HOH HOH . 
M 4 HOH A 35 341 73 HOH HOH . 
M 4 HOH A 36 342 74 HOH HOH . 
M 4 HOH A 37 343 75 HOH HOH . 
M 4 HOH A 38 344 78 HOH HOH . 
M 4 HOH A 39 345 79 HOH HOH . 
M 4 HOH A 40 346 84 HOH HOH . 
M 4 HOH A 41 347 85 HOH HOH . 
M 4 HOH A 42 348 88 HOH HOH . 
M 4 HOH A 43 349 91 HOH HOH . 
M 4 HOH A 44 350 93 HOH HOH . 
M 4 HOH A 45 351 96 HOH HOH . 
M 4 HOH A 46 352 97 HOH HOH . 
N 4 HOH B 1 203 2 HOH HOH . 
N 4 HOH B 2 204 5 HOH HOH . 
N 4 HOH B 3 205 15 HOH HOH . 
N 4 HOH B 4 206 16 HOH HOH . 
N 4 HOH B 5 207 17 HOH HOH . 
N 4 HOH B 6 208 19 HOH HOH . 
N 4 HOH B 7 209 21 HOH HOH . 
N 4 HOH B 8 210 23 HOH HOH . 
N 4 HOH B 9 211 25 HOH HOH . 
N 4 HOH B 10 212 28 HOH HOH . 
N 4 HOH B 11 213 29 HOH HOH . 
N 4 HOH B 12 214 32 HOH HOH . 
N 4 HOH B 13 215 34 HOH HOH . 
N 4 HOH B 14 216 39 HOH HOH . 
N 4 HOH B 15 217 41 HOH HOH . 
N 4 HOH B 16 218 43 HOH HOH . 
N 4 HOH B 17 219 50 HOH HOH . 
N 4 HOH B 18 220 60 HOH HOH . 
N 4 HOH B 19 221 61 HOH HOH . 
N 4 HOH B 20 222 63 HOH HOH . 
N 4 HOH B 21 223 65 HOH HOH . 
N 4 HOH B 22 224 72 HOH HOH . 
N 4 HOH B 23 225 76 HOH HOH . 
N 4 HOH B 24 226 77 HOH HOH . 
N 4 HOH B 25 227 81 HOH HOH . 
N 4 HOH B 26 228 82 HOH HOH . 
N 4 HOH B 27 229 83 HOH HOH . 
N 4 HOH B 28 230 89 HOH HOH . 
N 4 HOH B 29 231 94 HOH HOH . 
N 4 HOH B 30 232 95 HOH HOH . 
O 4 HOH C 1 306 13 HOH HOH . 
O 4 HOH C 2 307 22 HOH HOH . 
O 4 HOH C 3 308 24 HOH HOH . 
O 4 HOH C 4 309 26 HOH HOH . 
O 4 HOH C 5 310 27 HOH HOH . 
O 4 HOH C 6 311 40 HOH HOH . 
O 4 HOH C 7 312 42 HOH HOH . 
O 4 HOH C 8 313 44 HOH HOH . 
O 4 HOH C 9 314 46 HOH HOH . 
O 4 HOH C 10 315 52 HOH HOH . 
O 4 HOH C 11 316 56 HOH HOH . 
O 4 HOH C 12 317 58 HOH HOH . 
O 4 HOH C 13 318 64 HOH HOH . 
O 4 HOH C 14 319 66 HOH HOH . 
O 4 HOH C 15 320 67 HOH HOH . 
O 4 HOH C 16 321 70 HOH HOH . 
O 4 HOH C 17 322 80 HOH HOH . 
O 4 HOH C 18 323 86 HOH HOH . 
O 4 HOH C 19 324 87 HOH HOH . 
O 4 HOH C 20 325 90 HOH HOH . 
O 4 HOH C 21 326 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC D9G . . . J 3 9.817 5.129 22.542 1 87.06 ? CAC D9G 301 C 1 
HETATM 2 C CAD D9G . . . J 3 10.512 4.956 21.187 1 87.11 ? CAD D9G 301 C 1 
HETATM 3 C CAE D9G . . . J 3 9.497 4.857 20.04 1 86.81 ? CAE D9G 301 C 1 
HETATM 4 C CAF D9G . . . J 3 10.196 4.866 18.68 1 86.57 ? CAF D9G 301 C 1 
HETATM 5 C CAG D9G . . . J 3 9.652 5.952 17.755 1 85.97 ? CAG D9G 301 C 1 
HETATM 6 C CAH D9G . . . J 3 9.685 5.513 16.293 1 85.22 ? CAH D9G 301 C 1 
HETATM 7 C CAI D9G . . . J 3 9.043 6.561 15.386 1 84.23 ? CAI D9G 301 C 1 
HETATM 8 C CAJ D9G . . . J 3 7.594 6.199 15.066 1 84.32 ? CAJ D9G 301 C 1 
HETATM 9 C CAK D9G . . . J 3 7.285 6.438 13.594 1 86.16 ? CAK D9G 301 C 1 
HETATM 10 C CAL D9G . . . J 3 5.793 6.611 13.366 1 88.21 ? CAL D9G 301 C 1 
HETATM 11 C CAM D9G . . . J 3 5.522 7.281 12.024 1 91.48 ? CAM D9G 301 C 1 
HETATM 12 C CAN D9G . . . J 3 4.417 8.376 12.143 1 94.95 ? CAN D9G 301 C 1 
HETATM 13 N NAO D9G . . . J 3 3.59 8.372 11.01 1 96.89 ? NAO D9G 301 C 1 
HETATM 14 C CAS D9G . . . J 3 4.329 8.492 9.815 1 97.78 ? CAS D9G 301 C 1 
HETATM 15 C CAA D9G . . . J 3 2.733 7.219 10.984 1 97.99 ? CAA D9G 301 C 1 
HETATM 16 C CAP D9G . . . J 3 2.708 9.591 11.07 1 96.94 ? CAP D9G 301 C 1 
HETATM 17 C CAQ D9G . . . J 3 2.702 10.495 12.341 1 96.49 ? CAQ D9G 301 C 1 
HETATM 18 O OAB D9G . . . J 3 1.803 10.244 13.174 1 96.05 ? OAB D9G 301 C 1 
HETATM 19 O OAR D9G . . . J 3 3.545 11.438 12.426 1 94.11 ? OAR D9G 301 C 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#