data_1YS1
#
_model_server_result.job_id            JrG5D_FeAcOx-k-zPvTcZA 
_model_server_result.datetime_utc      '2024-11-04 22:57:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ys1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    1YS1 
#
_exptl.entry_id    1YS1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.358 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEXYLPHOSPHONIC ACID (R)-2-METHYL-3-PHENYLPROPYL ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.27 
_cell.angle_gamma         90 
_cell.entry_id            1YS1 
_cell.length_a            88.848 
_cell.length_b            46.185 
_cell.length_c            84.626 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 190 X CYS 190 1_555 A SG CYS 270 X CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A OG SER 87 X SER 87 1_555 C P 2HR . X 2HR 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
metalc ? metalc1 A OD2 ASP 242 X ASP 242 1_555 B CA CA . X CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc2 A OD2 ASP 288 X ASP 288 1_555 B CA CA . X CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc3 A O GLN 292 X GLN 292 1_555 B CA CA . X CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc4 A O VAL 296 X VAL 296 1_555 B CA CA . X CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc5 B CA CA . X CA 400 1_555 D O HOH . X HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc6 B CA CA . X CA 400 1_555 D O HOH . X HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
#
_chem_comp.formula           'C16 H27 O3 P' 
_chem_comp.formula_weight    298.358 
_chem_comp.id                2HR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEXYLPHOSPHONIC ACID (R)-2-METHYL-3-PHENYLPROPYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C5 2HR sing 1 n n 
C6 H61 2HR sing 2 n n 
C6 H62 2HR sing 3 n n 
C6 H63 2HR sing 4 n n 
C5 C4 2HR sing 5 n n 
C5 H51 2HR sing 6 n n 
C5 H52 2HR sing 7 n n 
C4 C3 2HR sing 8 n n 
C4 H41 2HR sing 9 n n 
C4 H42 2HR sing 10 n n 
C3 C2 2HR sing 11 n n 
C3 H31 2HR sing 12 n n 
C3 H32 2HR sing 13 n n 
C2 C1 2HR sing 14 n n 
C2 H21 2HR sing 15 n n 
C2 H22 2HR sing 16 n n 
C1 P 2HR sing 17 n n 
C1 H11 2HR sing 18 n n 
C1 H12A 2HR sing 19 n n 
P O 2HR sing 20 n n 
P O1 2HR sing 21 n n 
P O2 2HR doub 22 n n 
O HO 2HR sing 23 n n 
O1 C7 2HR sing 24 n n 
C7 C8 2HR sing 25 n n 
C7 H71 2HR sing 26 n n 
C7 H72 2HR sing 27 n n 
C8 C9 2HR sing 28 n n 
C8 C10 2HR sing 29 n n 
C8 H8 2HR sing 30 n n 
C9 H91 2HR sing 31 n n 
C9 H92 2HR sing 32 n n 
C9 H93 2HR sing 33 n n 
C10 C11 2HR sing 34 n n 
C10 H101 2HR sing 35 n n 
C10 H102 2HR sing 36 n n 
C11 C16 2HR doub 37 n y 
C11 C12 2HR sing 38 n y 
C16 C15 2HR sing 39 n y 
C16 H16 2HR sing 40 n n 
C15 C14 2HR doub 41 n y 
C15 H15 2HR sing 42 n n 
C14 C13 2HR sing 43 n y 
C14 H14 2HR sing 44 n n 
C13 C12 2HR doub 45 n y 
C13 H13 2HR sing 46 n n 
C12 H12 2HR sing 47 n n 
#
_atom_sites.entry_id                     1YS1 
_atom_sites.fract_transf_matrix[1][1]    0.011255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006836 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA X 1 400 400 CA CA . 
C 3 2HR X 1 600 600 2HR INH . 
D 4 HOH X 1 700 700 HOH HOH . 
D 4 HOH X 2 701 701 HOH HOH . 
D 4 HOH X 3 702 702 HOH HOH . 
D 4 HOH X 4 703 703 HOH HOH . 
D 4 HOH X 5 704 704 HOH HOH . 
D 4 HOH X 6 705 705 HOH HOH . 
D 4 HOH X 7 706 706 HOH HOH . 
D 4 HOH X 8 707 707 HOH HOH . 
D 4 HOH X 9 708 708 HOH HOH . 
D 4 HOH X 10 709 709 HOH HOH . 
D 4 HOH X 11 710 710 HOH HOH . 
D 4 HOH X 12 711 711 HOH HOH . 
D 4 HOH X 13 712 712 HOH HOH . 
D 4 HOH X 14 713 713 HOH HOH . 
D 4 HOH X 15 714 714 HOH HOH . 
D 4 HOH X 16 715 715 HOH HOH . 
D 4 HOH X 17 716 716 HOH HOH . 
D 4 HOH X 18 717 717 HOH HOH . 
D 4 HOH X 19 718 718 HOH HOH . 
D 4 HOH X 20 719 719 HOH HOH . 
D 4 HOH X 21 720 720 HOH HOH . 
D 4 HOH X 22 721 721 HOH HOH . 
D 4 HOH X 23 722 722 HOH HOH . 
D 4 HOH X 24 723 723 HOH HOH . 
D 4 HOH X 25 724 724 HOH HOH . 
D 4 HOH X 26 725 725 HOH HOH . 
D 4 HOH X 27 726 726 HOH HOH . 
D 4 HOH X 28 727 727 HOH HOH . 
D 4 HOH X 29 728 728 HOH HOH . 
D 4 HOH X 30 729 729 HOH HOH . 
D 4 HOH X 31 730 730 HOH HOH . 
D 4 HOH X 32 731 731 HOH HOH . 
D 4 HOH X 33 732 732 HOH HOH . 
D 4 HOH X 34 733 733 HOH HOH . 
D 4 HOH X 35 734 734 HOH HOH . 
D 4 HOH X 36 735 735 HOH HOH . 
D 4 HOH X 37 736 736 HOH HOH . 
D 4 HOH X 38 737 737 HOH HOH . 
D 4 HOH X 39 738 738 HOH HOH . 
D 4 HOH X 40 739 739 HOH HOH . 
D 4 HOH X 41 740 740 HOH HOH . 
D 4 HOH X 42 741 741 HOH HOH . 
D 4 HOH X 43 742 742 HOH HOH . 
D 4 HOH X 44 743 743 HOH HOH . 
D 4 HOH X 45 744 744 HOH HOH . 
D 4 HOH X 46 745 745 HOH HOH . 
D 4 HOH X 47 746 746 HOH HOH . 
D 4 HOH X 48 747 747 HOH HOH . 
D 4 HOH X 49 748 748 HOH HOH . 
D 4 HOH X 50 749 749 HOH HOH . 
D 4 HOH X 51 750 750 HOH HOH . 
D 4 HOH X 52 751 751 HOH HOH . 
D 4 HOH X 53 752 752 HOH HOH . 
D 4 HOH X 54 753 753 HOH HOH . 
D 4 HOH X 55 754 754 HOH HOH . 
D 4 HOH X 56 755 755 HOH HOH . 
D 4 HOH X 57 756 756 HOH HOH . 
D 4 HOH X 58 757 757 HOH HOH . 
D 4 HOH X 59 758 758 HOH HOH . 
D 4 HOH X 60 759 759 HOH HOH . 
D 4 HOH X 61 760 760 HOH HOH . 
D 4 HOH X 62 761 761 HOH HOH . 
D 4 HOH X 63 762 762 HOH HOH . 
D 4 HOH X 64 763 763 HOH HOH . 
D 4 HOH X 65 764 764 HOH HOH . 
D 4 HOH X 66 765 765 HOH HOH . 
D 4 HOH X 67 766 766 HOH HOH . 
D 4 HOH X 68 767 767 HOH HOH . 
D 4 HOH X 69 768 768 HOH HOH . 
D 4 HOH X 70 769 769 HOH HOH . 
D 4 HOH X 71 770 770 HOH HOH . 
D 4 HOH X 72 771 771 HOH HOH . 
D 4 HOH X 73 772 772 HOH HOH . 
D 4 HOH X 74 773 773 HOH HOH . 
D 4 HOH X 75 774 774 HOH HOH . 
D 4 HOH X 76 775 775 HOH HOH . 
D 4 HOH X 77 776 776 HOH HOH . 
D 4 HOH X 78 777 777 HOH HOH . 
D 4 HOH X 79 778 778 HOH HOH . 
D 4 HOH X 80 779 779 HOH HOH . 
D 4 HOH X 81 780 780 HOH HOH . 
D 4 HOH X 82 781 781 HOH HOH . 
D 4 HOH X 83 782 782 HOH HOH . 
D 4 HOH X 84 783 783 HOH HOH . 
D 4 HOH X 85 784 784 HOH HOH . 
D 4 HOH X 86 785 785 HOH HOH . 
D 4 HOH X 87 786 786 HOH HOH . 
D 4 HOH X 88 787 787 HOH HOH . 
D 4 HOH X 89 788 788 HOH HOH . 
D 4 HOH X 90 789 789 HOH HOH . 
D 4 HOH X 91 790 790 HOH HOH . 
D 4 HOH X 92 791 791 HOH HOH . 
D 4 HOH X 93 792 792 HOH HOH . 
D 4 HOH X 94 793 793 HOH HOH . 
D 4 HOH X 95 794 794 HOH HOH . 
D 4 HOH X 96 795 795 HOH HOH . 
D 4 HOH X 97 796 796 HOH HOH . 
D 4 HOH X 98 797 797 HOH HOH . 
D 4 HOH X 99 798 798 HOH HOH . 
D 4 HOH X 100 799 799 HOH HOH . 
D 4 HOH X 101 800 800 HOH HOH . 
D 4 HOH X 102 801 801 HOH HOH . 
D 4 HOH X 103 802 802 HOH HOH . 
D 4 HOH X 104 803 803 HOH HOH . 
D 4 HOH X 105 804 804 HOH HOH . 
D 4 HOH X 106 805 805 HOH HOH . 
D 4 HOH X 107 806 806 HOH HOH . 
D 4 HOH X 108 807 807 HOH HOH . 
D 4 HOH X 109 808 808 HOH HOH . 
D 4 HOH X 110 809 809 HOH HOH . 
D 4 HOH X 111 810 810 HOH HOH . 
D 4 HOH X 112 811 811 HOH HOH . 
D 4 HOH X 113 812 812 HOH HOH . 
D 4 HOH X 114 813 813 HOH HOH . 
D 4 HOH X 115 814 814 HOH HOH . 
D 4 HOH X 116 815 815 HOH HOH . 
D 4 HOH X 117 816 816 HOH HOH . 
D 4 HOH X 118 817 817 HOH HOH . 
D 4 HOH X 119 818 818 HOH HOH . 
D 4 HOH X 120 819 819 HOH HOH . 
D 4 HOH X 121 820 820 HOH HOH . 
D 4 HOH X 122 821 821 HOH HOH . 
D 4 HOH X 123 822 822 HOH HOH . 
D 4 HOH X 124 823 823 HOH HOH . 
D 4 HOH X 125 824 824 HOH HOH . 
D 4 HOH X 126 825 825 HOH HOH . 
D 4 HOH X 127 826 826 HOH HOH . 
D 4 HOH X 128 827 827 HOH HOH . 
D 4 HOH X 129 828 828 HOH HOH . 
D 4 HOH X 130 829 829 HOH HOH . 
D 4 HOH X 131 830 830 HOH HOH . 
D 4 HOH X 132 831 831 HOH HOH . 
D 4 HOH X 133 832 832 HOH HOH . 
D 4 HOH X 134 833 833 HOH HOH . 
D 4 HOH X 135 834 834 HOH HOH . 
D 4 HOH X 136 835 835 HOH HOH . 
D 4 HOH X 137 836 836 HOH HOH . 
D 4 HOH X 138 837 837 HOH HOH . 
D 4 HOH X 139 838 838 HOH HOH . 
D 4 HOH X 140 839 839 HOH HOH . 
D 4 HOH X 141 840 840 HOH HOH . 
D 4 HOH X 142 841 841 HOH HOH . 
D 4 HOH X 143 842 842 HOH HOH . 
D 4 HOH X 144 843 843 HOH HOH . 
D 4 HOH X 145 844 844 HOH HOH . 
D 4 HOH X 146 845 845 HOH HOH . 
D 4 HOH X 147 846 846 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 2HR . . . C 3 15.322 8.308 10.595 1 11.94 ? C6 2HR 600 X 1 
HETATM 2 C C5 2HR . . . C 3 15.882 7.743 11.899 1 9.38 ? C5 2HR 600 X 1 
HETATM 3 C C4 2HR . . . C 3 15.176 6.458 12.284 1 9.28 ? C4 2HR 600 X 1 
HETATM 4 C C3 2HR . . . C 3 15.61 5.939 13.655 1 7.58 ? C3 2HR 600 X 1 
HETATM 5 C C2 2HR . . . C 3 14.827 4.683 14.049 1 6.97 ? C2 2HR 600 X 1 
HETATM 6 C C1 2HR . . . C 3 13.395 5.036 14.473 1 6.13 ? C1 2HR 600 X 1 
HETATM 7 P P 2HR . . . C 3 12.366 3.638 14.592 1 5.03 ? P 2HR 600 X 1 
HETATM 8 O O 2HR . . . C 3 10.996 3.956 15.125 1 5.79 ? O 2HR 600 X 1 
HETATM 9 O O1 2HR . . . C 3 12.309 3.046 13.127 1 5.97 ? O1 2HR 600 X 1 
HETATM 10 C C7 2HR . . . C 3 11.469 1.964 12.752 1 7.11 ? C7 2HR 600 X 1 
HETATM 11 C C8 2HR . . . C 3 11.263 1.988 11.236 1 8.32 ? C8 2HR 600 X 1 
HETATM 12 C C9 2HR . . . C 3 10.484 0.732 10.846 1 9.76 ? C9 2HR 600 X 1 
HETATM 13 C C10 2HR . . . C 3 12.606 2.177 10.521 1 10.74 ? C10 2HR 600 X 1 
HETATM 14 C C11 2HR . . . C 3 12.538 1.979 9.021 1 15.35 ? C11 2HR 600 X 1 
HETATM 15 C C16 2HR . . . C 3 11.577 2.61 8.232 1 18.9 ? C16 2HR 600 X 1 
HETATM 16 C C15 2HR . . . C 3 11.548 2.399 6.852 1 19.63 ? C15 2HR 600 X 1 
HETATM 17 C C14 2HR . . . C 3 12.48 1.552 6.261 1 19.98 ? C14 2HR 600 X 1 
HETATM 18 C C13 2HR . . . C 3 13.437 0.916 7.043 1 19.1 ? C13 2HR 600 X 1 
HETATM 19 C C12 2HR . . . C 3 13.47 1.13 8.419 1 17.34 ? C12 2HR 600 X 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#