data_1YS7 # _model_server_result.job_id wkOVJL4mUU-cuRPvCU-F-w _model_server_result.datetime_utc '2024-12-26 11:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ys7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3001}' # _entry.id 1YS7 # _exptl.entry_id 1YS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.33 _cell.angle_beta 102.01 _cell.angle_gamma 92.9 _cell.entry_id 1YS7 _cell.length_a 37.35 _cell.length_b 46.486 _cell.length_c 65.554 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc2 A OD2 ASP 58 A ASP 58 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A O ASN 60 A ASN 60 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 C MG MG . A MG 1002 1_555 J O HOH . A HOH 4014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 C MG MG . A MG 1002 1_555 J O HOH . A HOH 4021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 C MG MG . A MG 1002 1_555 J O HOH . A HOH 4037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc7 B OD1 ASP 15 B ASP 15 1_555 F MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 B OD2 ASP 58 B ASP 58 1_555 F MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc9 B O ASN 60 B ASN 60 1_555 F MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc10 F MG MG . B MG 1001 1_555 K O HOH . B HOH 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc11 F MG MG . B MG 1001 1_555 K O HOH . B HOH 3013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc12 F MG MG . B MG 1001 1_555 K O HOH . B HOH 3028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 353 n n C C2 TRS sing 354 n n C C3 TRS sing 355 n n C N TRS sing 356 n n C1 O1 TRS sing 357 n n C1 H11 TRS sing 358 n n C1 H12 TRS sing 359 n n C2 O2 TRS sing 360 n n C2 H21 TRS sing 361 n n C2 H22 TRS sing 362 n n C3 O3 TRS sing 363 n n C3 H31 TRS sing 364 n n C3 H32 TRS sing 365 n n N HN1 TRS sing 366 n n N HN2 TRS sing 367 n n N HN3 TRS sing 368 n n O1 HO1 TRS sing 369 n n O2 HO2 TRS sing 370 n n O3 HO3 TRS sing 371 n n # _atom_sites.entry_id 1YS7 _atom_sites.fract_transf_matrix[1][1] 0.026774 _atom_sites.fract_transf_matrix[1][2] 0.001359 _atom_sites.fract_transf_matrix[1][3] 0.006077 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02154 _atom_sites.fract_transf_matrix[2][3] 0.004268 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1002 1002 MG MG . D 3 ACT A 1 4001 4001 ACT ACT . E 3 ACT A 1 4002 4002 ACT ACT . F 2 MG B 1 1001 1001 MG MG . G 4 TRS B 1 3001 3001 TRS TRS . H 5 GOL B 1 2001 2001 GOL GOL . I 5 GOL B 1 2002 2002 GOL GOL . J 6 HOH A 1 4003 2 HOH HOH . J 6 HOH A 2 4004 3 HOH HOH . J 6 HOH A 3 4005 6 HOH HOH . J 6 HOH A 4 4006 7 HOH HOH . J 6 HOH A 5 4007 8 HOH HOH . J 6 HOH A 6 4008 9 HOH HOH . J 6 HOH A 7 4009 10 HOH HOH . J 6 HOH A 8 4010 14 HOH HOH . J 6 HOH A 9 4011 15 HOH HOH . J 6 HOH A 10 4012 17 HOH HOH . J 6 HOH A 11 4013 18 HOH HOH . J 6 HOH A 12 4014 21 HOH HOH . J 6 HOH A 13 4015 26 HOH HOH . J 6 HOH A 14 4016 28 HOH HOH . J 6 HOH A 15 4017 29 HOH HOH . J 6 HOH A 16 4018 30 HOH HOH . J 6 HOH A 17 4019 33 HOH HOH . J 6 HOH A 18 4020 37 HOH HOH . J 6 HOH A 19 4021 38 HOH HOH . J 6 HOH A 20 4022 40 HOH HOH . J 6 HOH A 21 4023 42 HOH HOH . J 6 HOH A 22 4024 44 HOH HOH . J 6 HOH A 23 4025 47 HOH HOH . J 6 HOH A 24 4026 48 HOH HOH . J 6 HOH A 25 4027 49 HOH HOH . J 6 HOH A 26 4028 50 HOH HOH . J 6 HOH A 27 4029 51 HOH HOH . J 6 HOH A 28 4030 52 HOH HOH . J 6 HOH A 29 4031 58 HOH HOH . J 6 HOH A 30 4032 60 HOH HOH . J 6 HOH A 31 4033 63 HOH HOH . J 6 HOH A 32 4034 64 HOH HOH . J 6 HOH A 33 4035 66 HOH HOH . J 6 HOH A 34 4036 68 HOH HOH . J 6 HOH A 35 4037 69 HOH HOH . J 6 HOH A 36 4038 71 HOH HOH . J 6 HOH A 37 4039 75 HOH HOH . J 6 HOH A 38 4040 78 HOH HOH . J 6 HOH A 39 4041 82 HOH HOH . J 6 HOH A 40 4042 87 HOH HOH . J 6 HOH A 41 4043 88 HOH HOH . J 6 HOH A 42 4044 89 HOH HOH . J 6 HOH A 43 4045 92 HOH HOH . J 6 HOH A 44 4046 93 HOH HOH . J 6 HOH A 45 4047 95 HOH HOH . J 6 HOH A 46 4048 97 HOH HOH . J 6 HOH A 47 4049 98 HOH HOH . J 6 HOH A 48 4050 99 HOH HOH . J 6 HOH A 49 4051 100 HOH HOH . J 6 HOH A 50 4052 102 HOH HOH . J 6 HOH A 51 4053 104 HOH HOH . J 6 HOH A 52 4054 105 HOH HOH . J 6 HOH A 53 4055 106 HOH HOH . J 6 HOH A 54 4056 107 HOH HOH . J 6 HOH A 55 4057 109 HOH HOH . J 6 HOH A 56 4058 110 HOH HOH . J 6 HOH A 57 4059 112 HOH HOH . J 6 HOH A 58 4060 113 HOH HOH . J 6 HOH A 59 4061 118 HOH HOH . J 6 HOH A 60 4062 119 HOH HOH . J 6 HOH A 61 4063 121 HOH HOH . J 6 HOH A 62 4064 124 HOH HOH . J 6 HOH A 63 4065 125 HOH HOH . J 6 HOH A 64 4066 126 HOH HOH . J 6 HOH A 65 4067 127 HOH HOH . J 6 HOH A 66 4068 128 HOH HOH . J 6 HOH A 67 4069 129 HOH HOH . J 6 HOH A 68 4070 130 HOH HOH . J 6 HOH A 69 4071 131 HOH HOH . J 6 HOH A 70 4072 138 HOH HOH . J 6 HOH A 71 4073 139 HOH HOH . J 6 HOH A 72 4074 140 HOH HOH . J 6 HOH A 73 4075 141 HOH HOH . J 6 HOH A 74 4076 142 HOH HOH . J 6 HOH A 75 4077 144 HOH HOH . J 6 HOH A 76 4078 145 HOH HOH . J 6 HOH A 77 4079 146 HOH HOH . J 6 HOH A 78 4080 151 HOH HOH . J 6 HOH A 79 4081 152 HOH HOH . J 6 HOH A 80 4082 153 HOH HOH . J 6 HOH A 81 4083 155 HOH HOH . J 6 HOH A 82 4084 156 HOH HOH . J 6 HOH A 83 4085 157 HOH HOH . J 6 HOH A 84 4086 161 HOH HOH . J 6 HOH A 85 4087 163 HOH HOH . J 6 HOH A 86 4088 164 HOH HOH . J 6 HOH A 87 4089 165 HOH HOH . J 6 HOH A 88 4090 167 HOH HOH . J 6 HOH A 89 4091 170 HOH HOH . J 6 HOH A 90 4092 173 HOH HOH . J 6 HOH A 91 4093 175 HOH HOH . J 6 HOH A 92 4094 176 HOH HOH . J 6 HOH A 93 4095 179 HOH HOH . J 6 HOH A 94 4096 181 HOH HOH . J 6 HOH A 95 4097 185 HOH HOH . J 6 HOH A 96 4098 188 HOH HOH . J 6 HOH A 97 4099 191 HOH HOH . J 6 HOH A 98 4100 194 HOH HOH . J 6 HOH A 99 4101 199 HOH HOH . J 6 HOH A 100 4102 200 HOH HOH . J 6 HOH A 101 4103 201 HOH HOH . J 6 HOH A 102 4104 202 HOH HOH . K 6 HOH B 1 3002 1 HOH HOH . K 6 HOH B 2 3003 4 HOH HOH . K 6 HOH B 3 3004 5 HOH HOH . K 6 HOH B 4 3005 11 HOH HOH . K 6 HOH B 5 3006 12 HOH HOH . K 6 HOH B 6 3007 13 HOH HOH . K 6 HOH B 7 3008 16 HOH HOH . K 6 HOH B 8 3009 19 HOH HOH . K 6 HOH B 9 3010 20 HOH HOH . K 6 HOH B 10 3011 22 HOH HOH . K 6 HOH B 11 3012 23 HOH HOH . K 6 HOH B 12 3013 24 HOH HOH . K 6 HOH B 13 3014 25 HOH HOH . K 6 HOH B 14 3015 27 HOH HOH . K 6 HOH B 15 3016 31 HOH HOH . K 6 HOH B 16 3017 32 HOH HOH . K 6 HOH B 17 3018 34 HOH HOH . K 6 HOH B 18 3019 39 HOH HOH . K 6 HOH B 19 3020 41 HOH HOH . K 6 HOH B 20 3021 43 HOH HOH . K 6 HOH B 21 3022 45 HOH HOH . K 6 HOH B 22 3023 46 HOH HOH . K 6 HOH B 23 3024 53 HOH HOH . K 6 HOH B 24 3025 54 HOH HOH . K 6 HOH B 25 3026 55 HOH HOH . K 6 HOH B 26 3027 56 HOH HOH . K 6 HOH B 27 3028 59 HOH HOH . K 6 HOH B 28 3029 61 HOH HOH . K 6 HOH B 29 3030 62 HOH HOH . K 6 HOH B 30 3031 65 HOH HOH . K 6 HOH B 31 3032 67 HOH HOH . K 6 HOH B 32 3033 70 HOH HOH . K 6 HOH B 33 3034 72 HOH HOH . K 6 HOH B 34 3035 73 HOH HOH . K 6 HOH B 35 3036 76 HOH HOH . K 6 HOH B 36 3037 77 HOH HOH . K 6 HOH B 37 3038 79 HOH HOH . K 6 HOH B 38 3039 80 HOH HOH . K 6 HOH B 39 3040 81 HOH HOH . K 6 HOH B 40 3041 83 HOH HOH . K 6 HOH B 41 3042 84 HOH HOH . K 6 HOH B 42 3043 85 HOH HOH . K 6 HOH B 43 3044 86 HOH HOH . K 6 HOH B 44 3045 90 HOH HOH . K 6 HOH B 45 3046 91 HOH HOH . K 6 HOH B 46 3047 94 HOH HOH . K 6 HOH B 47 3048 96 HOH HOH . K 6 HOH B 48 3049 101 HOH HOH . K 6 HOH B 49 3050 103 HOH HOH . K 6 HOH B 50 3051 108 HOH HOH . K 6 HOH B 51 3052 111 HOH HOH . K 6 HOH B 52 3053 114 HOH HOH . K 6 HOH B 53 3054 115 HOH HOH . K 6 HOH B 54 3055 116 HOH HOH . K 6 HOH B 55 3056 117 HOH HOH . K 6 HOH B 56 3057 120 HOH HOH . K 6 HOH B 57 3058 122 HOH HOH . K 6 HOH B 58 3059 123 HOH HOH . K 6 HOH B 59 3060 132 HOH HOH . K 6 HOH B 60 3061 133 HOH HOH . K 6 HOH B 61 3062 134 HOH HOH . K 6 HOH B 62 3063 135 HOH HOH . K 6 HOH B 63 3064 137 HOH HOH . K 6 HOH B 64 3065 143 HOH HOH . K 6 HOH B 65 3066 147 HOH HOH . K 6 HOH B 66 3067 148 HOH HOH . K 6 HOH B 67 3068 149 HOH HOH . K 6 HOH B 68 3069 150 HOH HOH . K 6 HOH B 69 3070 154 HOH HOH . K 6 HOH B 70 3071 159 HOH HOH . K 6 HOH B 71 3072 160 HOH HOH . K 6 HOH B 72 3073 162 HOH HOH . K 6 HOH B 73 3074 166 HOH HOH . K 6 HOH B 74 3075 172 HOH HOH . K 6 HOH B 75 3076 174 HOH HOH . K 6 HOH B 76 3077 177 HOH HOH . K 6 HOH B 77 3078 178 HOH HOH . K 6 HOH B 78 3079 180 HOH HOH . K 6 HOH B 79 3080 182 HOH HOH . K 6 HOH B 80 3081 183 HOH HOH . K 6 HOH B 81 3082 184 HOH HOH . K 6 HOH B 82 3083 187 HOH HOH . K 6 HOH B 83 3084 189 HOH HOH . K 6 HOH B 84 3085 190 HOH HOH . K 6 HOH B 85 3086 195 HOH HOH . K 6 HOH B 86 3087 196 HOH HOH . K 6 HOH B 87 3088 197 HOH HOH . K 6 HOH B 88 3089 198 HOH HOH . K 6 HOH B 89 3090 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . G 4 4.893 29.549 64.447 1 31.45 ? C TRS 3001 B 1 HETATM 2 C C1 TRS . . . G 4 6.242 29.141 63.877 1 26.75 ? C1 TRS 3001 B 1 HETATM 3 C C2 TRS . . . G 4 4.056 30.219 63.379 1 30.75 ? C2 TRS 3001 B 1 HETATM 4 C C3 TRS . . . G 4 4.18 28.302 64.953 1 30.67 ? C3 TRS 3001 B 1 HETATM 5 N N TRS . . . G 4 5.086 30.545 65.523 1 29.74 ? N TRS 3001 B 1 HETATM 6 O O1 TRS . . . G 4 6.503 27.748 63.961 1 35.01 ? O1 TRS 3001 B 1 HETATM 7 O O2 TRS . . . G 4 3.781 31.505 63.882 1 35.93 ? O2 TRS 3001 B 1 HETATM 8 O O3 TRS . . . G 4 4.614 27.125 64.295 1 35.67 ? O3 TRS 3001 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #