data_1YSQ # _model_server_result.job_id zwh7ev1Ye84S4Cl1_nDuxw _model_server_result.datetime_utc '2024-12-23 10:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ysq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 1YSQ # _exptl.entry_id 1YSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YSQ _cell.length_a 65.51 _cell.length_b 65.51 _cell.length_c 88.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1YSQ _atom_sites.fract_transf_matrix[1][1] 0.015265 _atom_sites.fract_transf_matrix[1][2] 0.008813 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 301 PO4 PO4 . C 2 PO4 A 1 302 302 PO4 PO4 . D 2 PO4 A 1 303 303 PO4 PO4 . E 3 HOH A 1 304 1 HOH HOH . E 3 HOH A 2 305 2 HOH HOH . E 3 HOH A 3 306 3 HOH HOH . E 3 HOH A 4 307 4 HOH HOH . E 3 HOH A 5 308 5 HOH HOH . E 3 HOH A 6 309 6 HOH HOH . E 3 HOH A 7 310 7 HOH HOH . E 3 HOH A 8 311 8 HOH HOH . E 3 HOH A 9 312 9 HOH HOH . E 3 HOH A 10 313 11 HOH HOH . E 3 HOH A 11 314 12 HOH HOH . E 3 HOH A 12 315 13 HOH HOH . E 3 HOH A 13 316 14 HOH HOH . E 3 HOH A 14 317 15 HOH HOH . E 3 HOH A 15 318 16 HOH HOH . E 3 HOH A 16 319 18 HOH HOH . E 3 HOH A 17 320 19 HOH HOH . E 3 HOH A 18 321 20 HOH HOH . E 3 HOH A 19 322 21 HOH HOH . E 3 HOH A 20 323 22 HOH HOH . E 3 HOH A 21 324 23 HOH HOH . E 3 HOH A 22 325 24 HOH HOH . E 3 HOH A 23 326 25 HOH HOH . E 3 HOH A 24 327 26 HOH HOH . E 3 HOH A 25 328 27 HOH HOH . E 3 HOH A 26 329 28 HOH HOH . E 3 HOH A 27 330 29 HOH HOH . E 3 HOH A 28 331 30 HOH HOH . E 3 HOH A 29 332 31 HOH HOH . E 3 HOH A 30 333 32 HOH HOH . E 3 HOH A 31 334 33 HOH HOH . E 3 HOH A 32 335 34 HOH HOH . E 3 HOH A 33 336 35 HOH HOH . E 3 HOH A 34 337 36 HOH HOH . E 3 HOH A 35 338 37 HOH HOH . E 3 HOH A 36 339 38 HOH HOH . E 3 HOH A 37 340 39 HOH HOH . E 3 HOH A 38 341 40 HOH HOH . E 3 HOH A 39 342 41 HOH HOH . E 3 HOH A 40 343 42 HOH HOH . E 3 HOH A 41 344 43 HOH HOH . E 3 HOH A 42 345 44 HOH HOH . E 3 HOH A 43 346 45 HOH HOH . E 3 HOH A 44 347 46 HOH HOH . E 3 HOH A 45 348 47 HOH HOH . E 3 HOH A 46 349 48 HOH HOH . E 3 HOH A 47 350 50 HOH HOH . E 3 HOH A 48 351 51 HOH HOH . E 3 HOH A 49 352 52 HOH HOH . E 3 HOH A 50 353 53 HOH HOH . E 3 HOH A 51 354 54 HOH HOH . E 3 HOH A 52 355 55 HOH HOH . E 3 HOH A 53 356 56 HOH HOH . E 3 HOH A 54 357 57 HOH HOH . E 3 HOH A 55 358 58 HOH HOH . E 3 HOH A 56 359 59 HOH HOH . E 3 HOH A 57 360 60 HOH HOH . E 3 HOH A 58 361 61 HOH HOH . E 3 HOH A 59 362 62 HOH HOH . E 3 HOH A 60 363 63 HOH HOH . E 3 HOH A 61 364 64 HOH HOH . E 3 HOH A 62 365 65 HOH HOH . E 3 HOH A 63 366 66 HOH HOH . E 3 HOH A 64 367 67 HOH HOH . E 3 HOH A 65 368 68 HOH HOH . E 3 HOH A 66 369 69 HOH HOH . E 3 HOH A 67 370 70 HOH HOH . E 3 HOH A 68 371 71 HOH HOH . E 3 HOH A 69 372 72 HOH HOH . E 3 HOH A 70 373 73 HOH HOH . E 3 HOH A 71 374 74 HOH HOH . E 3 HOH A 72 375 75 HOH HOH . E 3 HOH A 73 376 76 HOH HOH . E 3 HOH A 74 377 77 HOH HOH . E 3 HOH A 75 378 78 HOH HOH . E 3 HOH A 76 379 79 HOH HOH . E 3 HOH A 77 380 80 HOH HOH . E 3 HOH A 78 381 81 HOH HOH . E 3 HOH A 79 382 82 HOH HOH . E 3 HOH A 80 383 83 HOH HOH . E 3 HOH A 81 384 84 HOH HOH . E 3 HOH A 82 385 85 HOH HOH . E 3 HOH A 83 386 86 HOH HOH . E 3 HOH A 84 387 87 HOH HOH . E 3 HOH A 85 388 88 HOH HOH . E 3 HOH A 86 389 89 HOH HOH . E 3 HOH A 87 390 90 HOH HOH . E 3 HOH A 88 391 91 HOH HOH . E 3 HOH A 89 392 92 HOH HOH . E 3 HOH A 90 393 93 HOH HOH . E 3 HOH A 91 394 94 HOH HOH . E 3 HOH A 92 395 95 HOH HOH . E 3 HOH A 93 396 96 HOH HOH . E 3 HOH A 94 397 97 HOH HOH . E 3 HOH A 95 398 98 HOH HOH . E 3 HOH A 96 399 99 HOH HOH . E 3 HOH A 97 400 100 HOH HOH . E 3 HOH A 98 401 101 HOH HOH . E 3 HOH A 99 402 102 HOH HOH . E 3 HOH A 100 403 103 HOH HOH . E 3 HOH A 101 404 104 HOH HOH . E 3 HOH A 102 405 105 HOH HOH . E 3 HOH A 103 406 106 HOH HOH . E 3 HOH A 104 407 107 HOH HOH . E 3 HOH A 105 408 108 HOH HOH . E 3 HOH A 106 409 109 HOH HOH . E 3 HOH A 107 410 110 HOH HOH . E 3 HOH A 108 411 111 HOH HOH . E 3 HOH A 109 412 112 HOH HOH . E 3 HOH A 110 413 113 HOH HOH . E 3 HOH A 111 414 114 HOH HOH . E 3 HOH A 112 415 115 HOH HOH . E 3 HOH A 113 416 116 HOH HOH . E 3 HOH A 114 417 117 HOH HOH . E 3 HOH A 115 418 118 HOH HOH . E 3 HOH A 116 419 119 HOH HOH . E 3 HOH A 117 420 120 HOH HOH . E 3 HOH A 118 421 121 HOH HOH . E 3 HOH A 119 422 123 HOH HOH . E 3 HOH A 120 423 124 HOH HOH . E 3 HOH A 121 424 125 HOH HOH . E 3 HOH A 122 425 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 43.791 27.058 -5.239 1 34.06 ? P PO4 303 A 1 HETATM 2 O O1 PO4 . . . D 2 43.455 27.06 -3.762 1 31.99 ? O1 PO4 303 A 1 HETATM 3 O O2 PO4 . . . D 2 43.866 25.63 -5.75 1 30.02 ? O2 PO4 303 A 1 HETATM 4 O O3 PO4 . . . D 2 42.75 27.85 -6.004 1 31.33 ? O3 PO4 303 A 1 HETATM 5 O O4 PO4 . . . D 2 45.162 27.687 -5.368 1 34.17 ? O4 PO4 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #