data_1YSR
#
_model_server_result.job_id            bPuqdQy9s88YrAkD6rYHTw 
_model_server_result.datetime_utc      '2024-10-20 03:30:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ysr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2002}' 
#
_entry.id    1YSR 
#
_exptl.entry_id    1YSR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YSR 
_cell.length_a            61.047 
_cell.length_b            61.047 
_cell.length_c            208.429 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YSR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1YSR 
_atom_sites.fract_transf_matrix[1][1]    0.016381 
_atom_sites.fract_transf_matrix[1][2]    0.009457 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018915 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 TRS A 1 1001 1001 TRS TRS . 
E 3 GOL A 1 2003 2003 GOL GOL . 
F 2 TRS B 1 1002 1002 TRS TRS . 
G 3 GOL B 1 2002 2002 GOL GOL . 
H 2 TRS C 1 1003 1003 TRS TRS . 
I 3 GOL C 1 2001 2001 GOL GOL . 
J 4 HOH A 1 2 2 HOH HOH . 
J 4 HOH A 2 7 7 HOH HOH . 
J 4 HOH A 3 11 11 HOH HOH . 
J 4 HOH A 4 12 12 HOH HOH . 
J 4 HOH A 5 13 13 HOH HOH . 
J 4 HOH A 6 16 16 HOH HOH . 
J 4 HOH A 7 18 18 HOH HOH . 
J 4 HOH A 8 20 20 HOH HOH . 
J 4 HOH A 9 25 25 HOH HOH . 
J 4 HOH A 10 26 26 HOH HOH . 
J 4 HOH A 11 27 27 HOH HOH . 
J 4 HOH A 12 31 31 HOH HOH . 
J 4 HOH A 13 36 36 HOH HOH . 
J 4 HOH A 14 40 40 HOH HOH . 
J 4 HOH A 15 45 45 HOH HOH . 
J 4 HOH A 16 47 47 HOH HOH . 
J 4 HOH A 17 49 49 HOH HOH . 
J 4 HOH A 18 50 50 HOH HOH . 
J 4 HOH A 19 51 51 HOH HOH . 
J 4 HOH A 20 52 52 HOH HOH . 
J 4 HOH A 21 53 53 HOH HOH . 
J 4 HOH A 22 55 55 HOH HOH . 
J 4 HOH A 23 58 58 HOH HOH . 
J 4 HOH A 24 59 59 HOH HOH . 
J 4 HOH A 25 62 62 HOH HOH . 
J 4 HOH A 26 63 63 HOH HOH . 
J 4 HOH A 27 64 64 HOH HOH . 
J 4 HOH A 28 70 70 HOH HOH . 
J 4 HOH A 29 72 72 HOH HOH . 
J 4 HOH A 30 73 73 HOH HOH . 
J 4 HOH A 31 77 77 HOH HOH . 
J 4 HOH A 32 79 79 HOH HOH . 
J 4 HOH A 33 85 85 HOH HOH . 
J 4 HOH A 34 89 89 HOH HOH . 
J 4 HOH A 35 91 91 HOH HOH . 
J 4 HOH A 36 94 94 HOH HOH . 
J 4 HOH A 37 99 99 HOH HOH . 
J 4 HOH A 38 105 105 HOH HOH . 
J 4 HOH A 39 107 107 HOH HOH . 
J 4 HOH A 40 108 108 HOH HOH . 
J 4 HOH A 41 110 110 HOH HOH . 
J 4 HOH A 42 112 112 HOH HOH . 
J 4 HOH A 43 114 114 HOH HOH . 
J 4 HOH A 44 118 118 HOH HOH . 
J 4 HOH A 45 121 121 HOH HOH . 
J 4 HOH A 46 127 127 HOH HOH . 
J 4 HOH A 47 128 128 HOH HOH . 
J 4 HOH A 48 131 131 HOH HOH . 
J 4 HOH A 49 134 134 HOH HOH . 
J 4 HOH A 50 135 135 HOH HOH . 
J 4 HOH A 51 142 142 HOH HOH . 
J 4 HOH A 52 144 144 HOH HOH . 
J 4 HOH A 53 145 145 HOH HOH . 
J 4 HOH A 54 146 146 HOH HOH . 
J 4 HOH A 55 154 154 HOH HOH . 
J 4 HOH A 56 156 156 HOH HOH . 
J 4 HOH A 57 157 157 HOH HOH . 
J 4 HOH A 58 161 161 HOH HOH . 
J 4 HOH A 59 163 163 HOH HOH . 
J 4 HOH A 60 165 165 HOH HOH . 
J 4 HOH A 61 167 167 HOH HOH . 
K 4 HOH B 1 1 1 HOH HOH . 
K 4 HOH B 2 3 3 HOH HOH . 
K 4 HOH B 3 6 6 HOH HOH . 
K 4 HOH B 4 8 8 HOH HOH . 
K 4 HOH B 5 14 14 HOH HOH . 
K 4 HOH B 6 15 15 HOH HOH . 
K 4 HOH B 7 17 17 HOH HOH . 
K 4 HOH B 8 19 19 HOH HOH . 
K 4 HOH B 9 29 29 HOH HOH . 
K 4 HOH B 10 32 32 HOH HOH . 
K 4 HOH B 11 33 33 HOH HOH . 
K 4 HOH B 12 34 34 HOH HOH . 
K 4 HOH B 13 39 39 HOH HOH . 
K 4 HOH B 14 41 41 HOH HOH . 
K 4 HOH B 15 42 42 HOH HOH . 
K 4 HOH B 16 43 43 HOH HOH . 
K 4 HOH B 17 48 48 HOH HOH . 
K 4 HOH B 18 54 54 HOH HOH . 
K 4 HOH B 19 61 61 HOH HOH . 
K 4 HOH B 20 65 65 HOH HOH . 
K 4 HOH B 21 66 66 HOH HOH . 
K 4 HOH B 22 75 75 HOH HOH . 
K 4 HOH B 23 78 78 HOH HOH . 
K 4 HOH B 24 80 80 HOH HOH . 
K 4 HOH B 25 81 81 HOH HOH . 
K 4 HOH B 26 83 83 HOH HOH . 
K 4 HOH B 27 90 90 HOH HOH . 
K 4 HOH B 28 95 95 HOH HOH . 
K 4 HOH B 29 100 100 HOH HOH . 
K 4 HOH B 30 102 102 HOH HOH . 
K 4 HOH B 31 104 104 HOH HOH . 
K 4 HOH B 32 106 106 HOH HOH . 
K 4 HOH B 33 111 111 HOH HOH . 
K 4 HOH B 34 113 113 HOH HOH . 
K 4 HOH B 35 115 115 HOH HOH . 
K 4 HOH B 36 116 116 HOH HOH . 
K 4 HOH B 37 119 119 HOH HOH . 
K 4 HOH B 38 120 120 HOH HOH . 
K 4 HOH B 39 126 126 HOH HOH . 
K 4 HOH B 40 130 130 HOH HOH . 
K 4 HOH B 41 140 140 HOH HOH . 
K 4 HOH B 42 143 143 HOH HOH . 
K 4 HOH B 43 150 150 HOH HOH . 
K 4 HOH B 44 151 151 HOH HOH . 
K 4 HOH B 45 152 152 HOH HOH . 
K 4 HOH B 46 153 153 HOH HOH . 
K 4 HOH B 47 155 155 HOH HOH . 
K 4 HOH B 48 158 158 HOH HOH . 
K 4 HOH B 49 159 159 HOH HOH . 
K 4 HOH B 50 160 160 HOH HOH . 
K 4 HOH B 51 162 162 HOH HOH . 
K 4 HOH B 52 164 164 HOH HOH . 
K 4 HOH B 53 166 166 HOH HOH . 
L 4 HOH C 1 4 4 HOH HOH . 
L 4 HOH C 2 5 5 HOH HOH . 
L 4 HOH C 3 9 9 HOH HOH . 
L 4 HOH C 4 10 10 HOH HOH . 
L 4 HOH C 5 21 21 HOH HOH . 
L 4 HOH C 6 22 22 HOH HOH . 
L 4 HOH C 7 23 23 HOH HOH . 
L 4 HOH C 8 24 24 HOH HOH . 
L 4 HOH C 9 28 28 HOH HOH . 
L 4 HOH C 10 30 30 HOH HOH . 
L 4 HOH C 11 35 35 HOH HOH . 
L 4 HOH C 12 37 37 HOH HOH . 
L 4 HOH C 13 38 38 HOH HOH . 
L 4 HOH C 14 44 44 HOH HOH . 
L 4 HOH C 15 46 46 HOH HOH . 
L 4 HOH C 16 56 56 HOH HOH . 
L 4 HOH C 17 57 57 HOH HOH . 
L 4 HOH C 18 60 60 HOH HOH . 
L 4 HOH C 19 67 67 HOH HOH . 
L 4 HOH C 20 68 68 HOH HOH . 
L 4 HOH C 21 69 69 HOH HOH . 
L 4 HOH C 22 71 71 HOH HOH . 
L 4 HOH C 23 74 74 HOH HOH . 
L 4 HOH C 24 76 76 HOH HOH . 
L 4 HOH C 25 82 82 HOH HOH . 
L 4 HOH C 26 84 84 HOH HOH . 
L 4 HOH C 27 86 86 HOH HOH . 
L 4 HOH C 28 87 87 HOH HOH . 
L 4 HOH C 29 88 88 HOH HOH . 
L 4 HOH C 30 92 92 HOH HOH . 
L 4 HOH C 31 93 93 HOH HOH . 
L 4 HOH C 32 96 96 HOH HOH . 
L 4 HOH C 33 97 97 HOH HOH . 
L 4 HOH C 34 98 98 HOH HOH . 
L 4 HOH C 35 101 101 HOH HOH . 
L 4 HOH C 36 103 103 HOH HOH . 
L 4 HOH C 37 109 109 HOH HOH . 
L 4 HOH C 38 117 117 HOH HOH . 
L 4 HOH C 39 122 122 HOH HOH . 
L 4 HOH C 40 123 123 HOH HOH . 
L 4 HOH C 41 124 124 HOH HOH . 
L 4 HOH C 42 125 125 HOH HOH . 
L 4 HOH C 43 129 129 HOH HOH . 
L 4 HOH C 44 132 132 HOH HOH . 
L 4 HOH C 45 133 133 HOH HOH . 
L 4 HOH C 46 136 136 HOH HOH . 
L 4 HOH C 47 137 137 HOH HOH . 
L 4 HOH C 48 138 138 HOH HOH . 
L 4 HOH C 49 139 139 HOH HOH . 
L 4 HOH C 50 141 141 HOH HOH . 
L 4 HOH C 51 147 147 HOH HOH . 
L 4 HOH C 52 148 148 HOH HOH . 
L 4 HOH C 53 149 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -9.845 19.188 16.102 1 55.68 ? C1 GOL 2002 B 1 
HETATM 2 O O1 GOL . . . G 3 -9.36 19.965 17.188 1 43.44 ? O1 GOL 2002 B 1 
HETATM 3 C C2 GOL . . . G 3 -8.66 18.337 15.633 1 51.49 ? C2 GOL 2002 B 1 
HETATM 4 O O2 GOL . . . G 3 -7.782 18.079 16.711 1 42.25 ? O2 GOL 2002 B 1 
HETATM 5 C C3 GOL . . . G 3 -8.939 17.112 14.745 1 43.91 ? C3 GOL 2002 B 1 
HETATM 6 O O3 GOL . . . G 3 -9.435 17.514 13.465 1 52.98 ? O3 GOL 2002 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#