data_1YSZ
#
_model_server_result.job_id            TTPiZ4buq9hfuH6ZOeG6UQ 
_model_server_result.datetime_utc      '2024-11-13 06:09:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ysz 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":338}' 
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_entry.id    1YSZ 
#
_exptl.entry_id    1YSZ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              308.293 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YSZ 
_cell.length_a            65.586 
_cell.length_b            95.514 
_cell.length_c            42.857 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1YSZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H16 N6 O4' 
_chem_comp.formula_weight    308.293 
_chem_comp.id                NEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5' O5' NEC doub 237 n n 
C5' N5' NEC sing 238 n n 
C5' C4' NEC sing 239 n n 
N5' C51 NEC sing 240 n n 
N5' HN5 NEC sing 241 n n 
C51 C52 NEC sing 242 n n 
C51 H511 NEC sing 243 n n 
C51 H512 NEC sing 244 n n 
C52 H521 NEC sing 245 n n 
C52 H522 NEC sing 246 n n 
C52 H523 NEC sing 247 n n 
C4' O4' NEC sing 248 n n 
C4' C3' NEC sing 249 n n 
C4' H4' NEC sing 250 n n 
O4' C1' NEC sing 251 n n 
C3' O3' NEC sing 252 n n 
C3' C2' NEC sing 253 n n 
C3' H3' NEC sing 254 n n 
O3' HO3' NEC sing 255 n n 
C2' O2' NEC sing 256 n n 
C2' C1' NEC sing 257 n n 
C2' H2' NEC sing 258 n n 
O2' HO2' NEC sing 259 n n 
C1' N9 NEC sing 260 n n 
C1' H1' NEC sing 261 n n 
N9 C8 NEC sing 262 n y 
N9 C4 NEC sing 263 n y 
C8 N7 NEC doub 264 n y 
C8 H8 NEC sing 265 n n 
N7 C5 NEC sing 266 n y 
C5 C6 NEC sing 267 n y 
C5 C4 NEC doub 268 n y 
C6 N6 NEC sing 269 n n 
C6 N1 NEC doub 270 n y 
N6 HN61 NEC sing 271 n n 
N6 HN62 NEC sing 272 n n 
N1 C2 NEC sing 273 n y 
C2 N3 NEC doub 274 n y 
C2 H2 NEC sing 275 n n 
N3 C4 NEC sing 276 n y 
#
_atom_sites.entry_id                     1YSZ 
_atom_sites.fract_transf_matrix[1][1]    0.015247 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01047 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023333 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NEC A 1 338 1 NEC NEC . 
C 3 PG4 A 1 339 1 PG4 PG4 . 
D 3 PG4 A 1 340 2 PG4 PG4 . 
E 3 PG4 A 1 341 6 PG4 PG4 . 
F 4 HOH A 1 342 1 HOH HOH . 
F 4 HOH A 2 343 2 HOH HOH . 
F 4 HOH A 3 344 3 HOH HOH . 
F 4 HOH A 4 345 4 HOH HOH . 
F 4 HOH A 5 346 5 HOH HOH . 
F 4 HOH A 6 347 6 HOH HOH . 
F 4 HOH A 7 348 7 HOH HOH . 
F 4 HOH A 8 349 8 HOH HOH . 
F 4 HOH A 9 350 9 HOH HOH . 
F 4 HOH A 10 351 10 HOH HOH . 
F 4 HOH A 11 352 11 HOH HOH . 
F 4 HOH A 12 353 12 HOH HOH . 
F 4 HOH A 13 354 13 HOH HOH . 
F 4 HOH A 14 355 14 HOH HOH . 
F 4 HOH A 15 356 15 HOH HOH . 
F 4 HOH A 16 357 16 HOH HOH . 
F 4 HOH A 17 358 17 HOH HOH . 
F 4 HOH A 18 359 18 HOH HOH . 
F 4 HOH A 19 360 19 HOH HOH . 
F 4 HOH A 20 361 20 HOH HOH . 
F 4 HOH A 21 362 21 HOH HOH . 
F 4 HOH A 22 363 22 HOH HOH . 
F 4 HOH A 23 364 23 HOH HOH . 
F 4 HOH A 24 365 24 HOH HOH . 
F 4 HOH A 25 366 25 HOH HOH . 
F 4 HOH A 26 367 26 HOH HOH . 
F 4 HOH A 27 368 27 HOH HOH . 
F 4 HOH A 28 369 28 HOH HOH . 
F 4 HOH A 29 370 29 HOH HOH . 
F 4 HOH A 30 371 30 HOH HOH . 
F 4 HOH A 31 372 31 HOH HOH . 
F 4 HOH A 32 373 32 HOH HOH . 
F 4 HOH A 33 374 33 HOH HOH . 
F 4 HOH A 34 375 34 HOH HOH . 
F 4 HOH A 35 376 35 HOH HOH . 
F 4 HOH A 36 377 36 HOH HOH . 
F 4 HOH A 37 378 37 HOH HOH . 
F 4 HOH A 38 379 38 HOH HOH . 
F 4 HOH A 39 380 39 HOH HOH . 
F 4 HOH A 40 381 40 HOH HOH . 
F 4 HOH A 41 382 41 HOH HOH . 
F 4 HOH A 42 383 42 HOH HOH . 
F 4 HOH A 43 384 43 HOH HOH . 
F 4 HOH A 44 385 44 HOH HOH . 
F 4 HOH A 45 386 45 HOH HOH . 
F 4 HOH A 46 387 46 HOH HOH . 
F 4 HOH A 47 388 47 HOH HOH . 
F 4 HOH A 48 389 48 HOH HOH . 
F 4 HOH A 49 390 49 HOH HOH . 
F 4 HOH A 50 391 50 HOH HOH . 
F 4 HOH A 51 392 51 HOH HOH . 
F 4 HOH A 52 393 52 HOH HOH . 
F 4 HOH A 53 394 53 HOH HOH . 
F 4 HOH A 54 395 54 HOH HOH . 
F 4 HOH A 55 396 55 HOH HOH . 
F 4 HOH A 56 397 56 HOH HOH . 
F 4 HOH A 57 398 57 HOH HOH . 
F 4 HOH A 58 399 58 HOH HOH . 
F 4 HOH A 59 400 59 HOH HOH . 
F 4 HOH A 60 401 60 HOH HOH . 
F 4 HOH A 61 402 61 HOH HOH . 
F 4 HOH A 62 403 62 HOH HOH . 
F 4 HOH A 63 404 63 HOH HOH . 
F 4 HOH A 64 405 64 HOH HOH . 
F 4 HOH A 65 406 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5' NEC . . . B 2 44.793 34.948 38.307 1 50.12 ? C5' NEC 338 A 1 
HETATM 2 O O5' NEC . . . B 2 44.965 34.359 37.021 1 50.31 ? O5' NEC 338 A 1 
HETATM 3 N N5' NEC . . . B 2 43.996 36.136 38.477 1 49.72 ? N5' NEC 338 A 1 
HETATM 4 C C51 NEC . . . B 2 43.806 37.053 37.38 1 50.63 ? C51 NEC 338 A 1 
HETATM 5 C C52 NEC . . . B 2 44.42 38.396 37.765 1 50.85 ? C52 NEC 338 A 1 
HETATM 6 C C4' NEC . . . B 2 45.383 34.346 39.56 1 49.4 ? C4' NEC 338 A 1 
HETATM 7 O O4' NEC . . . B 2 44.388 33.629 40.237 1 48.15 ? O4' NEC 338 A 1 
HETATM 8 C C3' NEC . . . B 2 46.531 33.359 39.37 1 49.9 ? C3' NEC 338 A 1 
HETATM 9 O O3' NEC . . . B 2 47.802 33.968 39.379 1 51.49 ? O3' NEC 338 A 1 
HETATM 10 C C2' NEC . . . B 2 46.287 32.347 40.501 1 48.44 ? C2' NEC 338 A 1 
HETATM 11 O O2' NEC . . . B 2 46.899 32.797 41.696 1 50.25 ? O2' NEC 338 A 1 
HETATM 12 C C1' NEC . . . B 2 44.738 32.263 40.572 1 47.12 ? C1' NEC 338 A 1 
HETATM 13 N N9 NEC . . . B 2 44.289 31.231 39.579 1 44.03 ? N9 NEC 338 A 1 
HETATM 14 C C8 NEC . . . B 2 43.653 31.412 38.357 1 43.74 ? C8 NEC 338 A 1 
HETATM 15 N N7 NEC . . . B 2 43.398 30.278 37.739 1 41.07 ? N7 NEC 338 A 1 
HETATM 16 C C5 NEC . . . B 2 43.877 29.293 38.608 1 41.78 ? C5 NEC 338 A 1 
HETATM 17 C C6 NEC . . . B 2 43.903 27.849 38.555 1 40.06 ? C6 NEC 338 A 1 
HETATM 18 N N6 NEC . . . B 2 43.403 27.154 37.525 1 36.44 ? N6 NEC 338 A 1 
HETATM 19 N N1 NEC . . . B 2 44.451 27.155 39.609 1 40.76 ? N1 NEC 338 A 1 
HETATM 20 C C2 NEC . . . B 2 44.959 27.844 40.658 1 42.05 ? C2 NEC 338 A 1 
HETATM 21 N N3 NEC . . . B 2 45.002 29.189 40.825 1 42.66 ? N3 NEC 338 A 1 
HETATM 22 C C4 NEC . . . B 2 44.441 29.867 39.752 1 42.86 ? C4 NEC 338 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
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