data_1YSZ # _model_server_result.job_id bSmo1AF9QRQsGSzeYbSB8w _model_server_result.datetime_utc '2024-11-13 06:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ysz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":340}' # _entry.id 1YSZ # _exptl.entry_id 1YSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YSZ _cell.length_a 65.586 _cell.length_b 95.514 _cell.length_c 42.857 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 277 n n O1 HO1 PG4 sing 278 n n C1 C2 PG4 sing 279 n n C1 H11 PG4 sing 280 n n C1 H12 PG4 sing 281 n n C2 O2 PG4 sing 282 n n C2 H21 PG4 sing 283 n n C2 H22 PG4 sing 284 n n O2 C3 PG4 sing 285 n n C3 C4 PG4 sing 286 n n C3 H31 PG4 sing 287 n n C3 H32 PG4 sing 288 n n C4 O3 PG4 sing 289 n n C4 H41 PG4 sing 290 n n C4 H42 PG4 sing 291 n n O3 C5 PG4 sing 292 n n C5 C6 PG4 sing 293 n n C5 H51 PG4 sing 294 n n C5 H52 PG4 sing 295 n n C6 O4 PG4 sing 296 n n C6 H61 PG4 sing 297 n n C6 H62 PG4 sing 298 n n O4 C7 PG4 sing 299 n n C7 C8 PG4 sing 300 n n C7 H71 PG4 sing 301 n n C7 H72 PG4 sing 302 n n C8 O5 PG4 sing 303 n n C8 H81 PG4 sing 304 n n C8 H82 PG4 sing 305 n n O5 HO5 PG4 sing 306 n n # _atom_sites.entry_id 1YSZ _atom_sites.fract_transf_matrix[1][1] 0.015247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NEC A 1 338 1 NEC NEC . C 3 PG4 A 1 339 1 PG4 PG4 . D 3 PG4 A 1 340 2 PG4 PG4 . E 3 PG4 A 1 341 6 PG4 PG4 . F 4 HOH A 1 342 1 HOH HOH . F 4 HOH A 2 343 2 HOH HOH . F 4 HOH A 3 344 3 HOH HOH . F 4 HOH A 4 345 4 HOH HOH . F 4 HOH A 5 346 5 HOH HOH . F 4 HOH A 6 347 6 HOH HOH . F 4 HOH A 7 348 7 HOH HOH . F 4 HOH A 8 349 8 HOH HOH . F 4 HOH A 9 350 9 HOH HOH . F 4 HOH A 10 351 10 HOH HOH . F 4 HOH A 11 352 11 HOH HOH . F 4 HOH A 12 353 12 HOH HOH . F 4 HOH A 13 354 13 HOH HOH . F 4 HOH A 14 355 14 HOH HOH . F 4 HOH A 15 356 15 HOH HOH . F 4 HOH A 16 357 16 HOH HOH . F 4 HOH A 17 358 17 HOH HOH . F 4 HOH A 18 359 18 HOH HOH . F 4 HOH A 19 360 19 HOH HOH . F 4 HOH A 20 361 20 HOH HOH . F 4 HOH A 21 362 21 HOH HOH . F 4 HOH A 22 363 22 HOH HOH . F 4 HOH A 23 364 23 HOH HOH . F 4 HOH A 24 365 24 HOH HOH . F 4 HOH A 25 366 25 HOH HOH . F 4 HOH A 26 367 26 HOH HOH . F 4 HOH A 27 368 27 HOH HOH . F 4 HOH A 28 369 28 HOH HOH . F 4 HOH A 29 370 29 HOH HOH . F 4 HOH A 30 371 30 HOH HOH . F 4 HOH A 31 372 31 HOH HOH . F 4 HOH A 32 373 32 HOH HOH . F 4 HOH A 33 374 33 HOH HOH . F 4 HOH A 34 375 34 HOH HOH . F 4 HOH A 35 376 35 HOH HOH . F 4 HOH A 36 377 36 HOH HOH . F 4 HOH A 37 378 37 HOH HOH . F 4 HOH A 38 379 38 HOH HOH . F 4 HOH A 39 380 39 HOH HOH . F 4 HOH A 40 381 40 HOH HOH . F 4 HOH A 41 382 41 HOH HOH . F 4 HOH A 42 383 42 HOH HOH . F 4 HOH A 43 384 43 HOH HOH . F 4 HOH A 44 385 44 HOH HOH . F 4 HOH A 45 386 45 HOH HOH . F 4 HOH A 46 387 46 HOH HOH . F 4 HOH A 47 388 47 HOH HOH . F 4 HOH A 48 389 48 HOH HOH . F 4 HOH A 49 390 49 HOH HOH . F 4 HOH A 50 391 50 HOH HOH . F 4 HOH A 51 392 51 HOH HOH . F 4 HOH A 52 393 52 HOH HOH . F 4 HOH A 53 394 53 HOH HOH . F 4 HOH A 54 395 54 HOH HOH . F 4 HOH A 55 396 55 HOH HOH . F 4 HOH A 56 397 56 HOH HOH . F 4 HOH A 57 398 57 HOH HOH . F 4 HOH A 58 399 58 HOH HOH . F 4 HOH A 59 400 59 HOH HOH . F 4 HOH A 60 401 60 HOH HOH . F 4 HOH A 61 402 61 HOH HOH . F 4 HOH A 62 403 62 HOH HOH . F 4 HOH A 63 404 63 HOH HOH . F 4 HOH A 64 405 64 HOH HOH . F 4 HOH A 65 406 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 3 32.942 12.194 32.874 1 81.47 ? O1 PG4 340 A 1 HETATM 2 C C1 PG4 . . . D 3 33.117 12.592 31.512 1 80.87 ? C1 PG4 340 A 1 HETATM 3 C C2 PG4 . . . D 3 32.126 13.709 31.185 1 80.38 ? C2 PG4 340 A 1 HETATM 4 O O2 PG4 . . . D 3 30.763 13.278 31.348 1 80.03 ? O2 PG4 340 A 1 HETATM 5 C C3 PG4 . . . D 3 29.872 14.383 31.127 1 78.83 ? C3 PG4 340 A 1 HETATM 6 C C4 PG4 . . . D 3 30.196 15.408 32.203 1 78.31 ? C4 PG4 340 A 1 HETATM 7 O O3 PG4 . . . D 3 29.459 16.638 32.193 1 75.22 ? O3 PG4 340 A 1 HETATM 8 C C5 PG4 . . . D 3 30.06 17.315 33.306 1 73.87 ? C5 PG4 340 A 1 HETATM 9 C C6 PG4 . . . D 3 29.598 18.735 33.582 1 72.08 ? C6 PG4 340 A 1 HETATM 10 O O4 PG4 . . . D 3 30.342 19.194 34.724 1 69.16 ? O4 PG4 340 A 1 HETATM 11 C C7 PG4 . . . D 3 31.751 19.145 34.446 1 66.32 ? C7 PG4 340 A 1 HETATM 12 C C8 PG4 . . . D 3 32.559 19.565 35.662 1 66.21 ? C8 PG4 340 A 1 HETATM 13 O O5 PG4 . . . D 3 33.95 19.475 35.323 1 66.25 ? O5 PG4 340 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #